data_6LUM
#
_model_server_result.job_id            oTrsGlSw62E7blqvoVczOA 
_model_server_result.datetime_utc      '2025-09-06 07:51:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lum 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"LA","auth_seq_id":302}' 
#
_entry.id    6LUM 
#
_exptl.entry_id    6LUM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              351.64 
_entity.id                          14 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRON/SULFUR CLUSTER' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6LUM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LUM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentadecameric 
_pdbx_struct_assembly.oligomeric_count      15 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 14 AA N N 
? 14 LA N N 
? 14 ZA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 47 C HIS 47 1_555 S FE HEM . D HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
metalc ? metalc2 B NE2 HIS 107 D HIS 107 1_555 R FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc3 E OD1 ASP 85 B ASP 85 1_555 Z FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc4 E OD2 ASP 85 B ASP 85 1_555 Z FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc5 E SG CYS 174 B CYS 174 1_555 AA FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? 
metalc ? metalc6 E SG CYS 177 B CYS 177 1_555 AA FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? 
metalc ? metalc7 E SG CYS 180 B CYS 180 1_555 AA FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc8 E SG CYS 184 B CYS 184 1_555 BA FE1 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc9 E SG CYS 230 B CYS 230 1_555 BA FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc10 E SG CYS 236 B CYS 236 1_555 BA FE4 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc11 E SG CYS 240 B CYS 240 1_555 AA FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc12 G NE2 HIS 107 H HIS 107 1_555 FA FE HEM . H HEM 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
metalc ? metalc13 J OD1 ASP 85 K ASP 85 1_555 KA FE2 FES . K FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc14 J OD2 ASP 85 K ASP 85 1_555 KA FE2 FES . K FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc15 J SG CYS 97 K CYS 97 1_555 KA FE2 FES . K FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc16 J SG CYS 174 K CYS 174 1_555 LA FE4 SF4 . K SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc17 J SG CYS 177 K CYS 177 1_555 LA FE2 SF4 . K SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc18 J SG CYS 180 K CYS 180 1_555 LA FE1 SF4 . K SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc19 J SG CYS 184 K CYS 184 1_555 MA FE1 F3S . K F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc20 J SG CYS 230 K CYS 230 1_555 MA FE3 F3S . K F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc21 J O THR 233 K THR 233 1_555 MA FE4 F3S . K F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
metalc ? metalc22 J SG CYS 236 K CYS 236 1_555 MA FE4 F3S . K F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc23 J SG CYS 240 K CYS 240 1_555 LA FE3 SF4 . K SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc24 K NE2 HIS 47 M HIS 47 1_555 SA FE HEM . N HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? 
metalc ? metalc25 OA FE HEM . M HEM 201 1_555 L NE2 HIS 107 N HIS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc26 O OD1 ASP 85 Q ASP 85 1_555 YA FE1 FES . Q FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc27 O SG CYS 177 Q CYS 177 1_555 ZA FE2 SF4 . Q SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc28 O SG CYS 180 Q CYS 180 1_555 ZA FE1 SF4 . Q SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc29 O SG CYS 184 Q CYS 184 1_555 AB FE1 F3S . Q F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc30 O SG CYS 230 Q CYS 230 1_555 AB FE3 F3S . Q F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc31 O O THR 233 Q THR 233 1_555 AB FE4 F3S . Q F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc32 O SG CYS 236 Q CYS 236 1_555 AB FE4 F3S . Q F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc33 O SG CYS 240 Q CYS 240 1_555 ZA FE3 SF4 . Q SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
#
_chem_comp.formula           'Fe4 S4' 
_chem_comp.formula_weight    351.64 
_chem_comp.id                SF4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRON/SULFUR CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S2 SF4 sing 1243 n n 
FE1 S3 SF4 sing 1244 n n 
FE1 S4 SF4 sing 1245 n n 
FE2 S1 SF4 sing 1246 n n 
FE2 S3 SF4 sing 1247 n n 
FE2 S4 SF4 sing 1248 n n 
FE3 S1 SF4 sing 1249 n n 
FE3 S2 SF4 sing 1250 n n 
FE3 S4 SF4 sing 1251 n n 
FE4 S1 SF4 sing 1252 n n 
FE4 S2 SF4 sing 1253 n n 
FE4 S3 SF4 sing 1254 n n 
#
_atom_sites.entry_id                     6LUM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
P 6 PEV C 1 201 201 PEV PEV . 
Q 6 PEV C 1 202 202 PEV PEV . 
R 7 HEM D 1 201 201 HEM HEM . 
S 7 HEM D 1 202 202 HEM HEM . 
T 8 MQ9 D 1 203 203 MQ9 MQ9 . 
U 9 CDL D 1 204 204 CDL CDL . 
V 8 MQ9 D 1 205 205 MQ9 MQ9 . 
W 10 LPP D 1 206 206 LPP LPP . 
X 11 PIE E 1 101 101 PIE PIE . 
Y 12 FAD A 1 700 700 FAD FAD . 
Z 13 FES B 1 301 301 FES FES . 
AA 14 SF4 B 1 302 302 SF4 SF4 . 
BA 15 F3S B 1 303 303 F3S F3S . 
CA 6 PEV G 1 201 201 PEV PEV . 
DA 10 LPP H 1 201 201 LPP LPP . 
EA 7 HEM H 1 202 202 HEM HEM . 
FA 7 HEM H 1 203 203 HEM HEM . 
GA 8 MQ9 H 1 204 204 MQ9 MQ9 . 
HA 9 CDL H 1 205 205 CDL CDL . 
IA 11 PIE H 1 206 206 PIE PIE . 
JA 12 FAD J 1 700 700 FAD FAD . 
KA 13 FES K 1 301 301 FES FES . 
LA 14 SF4 K 1 302 302 SF4 SF4 . 
MA 15 F3S K 1 303 303 F3S F3S . 
NA 6 PEV K 1 304 304 PEV PEV . 
OA 7 HEM M 1 201 201 HEM HEM . 
PA 11 PIE M 1 202 202 PIE PIE . 
QA 6 PEV M 1 203 203 PEV PEV . 
RA 8 MQ9 N 1 201 201 MQ9 MQ9 . 
SA 7 HEM N 1 202 202 HEM HEM . 
TA 8 MQ9 N 1 203 203 MQ9 MQ9 . 
UA 8 MQ9 N 1 204 204 MQ9 MQ9 . 
VA 10 LPP N 1 205 205 LPP LPP . 
WA 9 CDL N 1 206 206 CDL CDL . 
XA 12 FAD P 1 700 700 FAD FAD . 
YA 13 FES Q 1 301 301 FES FES . 
ZA 14 SF4 Q 1 302 302 SF4 SF4 . 
AB 15 F3S Q 1 303 303 F3S F3S . 
BB 6 PEV Q 1 304 304 PEV PEV . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 SF4 . . . LA 14 140.712 132.524 143.262 1 24.51 ? FE1 SF4 302 K 1 
HETATM 2 FE FE2 SF4 . . . LA 14 139.461 130.974 141.014 1 24.51 ? FE2 SF4 302 K 1 
HETATM 3 FE FE3 SF4 . . . LA 14 141.6 129.682 142.713 1 24.51 ? FE3 SF4 302 K 1 
HETATM 4 FE FE4 SF4 . . . LA 14 142.304 131.868 140.76 1 24.51 ? FE4 SF4 302 K 1 
HETATM 5 S S1 SF4 . . . LA 14 141.308 129.991 140.618 1 24.51 ? S1 SF4 302 K 1 
HETATM 6 S S2 SF4 . . . LA 14 142.579 131.564 142.856 1 24.51 ? S2 SF4 302 K 1 
HETATM 7 S S3 SF4 . . . LA 14 140.457 132.847 141.167 1 24.51 ? S3 SF4 302 K 1 
HETATM 8 S S4 SF4 . . . LA 14 139.73 130.641 143.098 1 24.51 ? S4 SF4 302 K 1 
#
_model_server_stats.io_time_ms              111 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           387 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#