data_6LV3 # _model_server_result.job_id fgq4VXWn7Rdntp8FRzRNKA _model_server_result.datetime_utc '2024-11-23 00:04:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lv3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6LV3 # _exptl.entry_id 6LV3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.127 _cell.angle_gamma 90 _cell.entry_id 6LV3 _cell.length_a 42.33 _cell.length_b 41.259 _cell.length_c 72.083 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LV3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 C CO CO . A CO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 C CO CO . A CO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 C CO CO . A CO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6LV3 _atom_sites.fract_transf_matrix[1][1] 0.023624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005946 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014306 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 302 GOL GOL . C 3 CO A 1 302 1 CO CO . D 4 HOH A 1 401 582 HOH HOH . D 4 HOH A 2 402 570 HOH HOH . D 4 HOH A 3 403 401 HOH HOH . D 4 HOH A 4 404 402 HOH HOH . D 4 HOH A 5 405 403 HOH HOH . D 4 HOH A 6 406 622 HOH HOH . D 4 HOH A 7 407 404 HOH HOH . D 4 HOH A 8 408 406 HOH HOH . D 4 HOH A 9 409 590 HOH HOH . D 4 HOH A 10 410 412 HOH HOH . D 4 HOH A 11 411 485 HOH HOH . D 4 HOH A 12 412 417 HOH HOH . D 4 HOH A 13 413 650 HOH HOH . D 4 HOH A 14 414 454 HOH HOH . D 4 HOH A 15 415 411 HOH HOH . D 4 HOH A 16 416 427 HOH HOH . D 4 HOH A 17 417 443 HOH HOH . D 4 HOH A 18 418 503 HOH HOH . D 4 HOH A 19 419 407 HOH HOH . D 4 HOH A 20 420 420 HOH HOH . D 4 HOH A 21 421 415 HOH HOH . D 4 HOH A 22 422 490 HOH HOH . D 4 HOH A 23 423 429 HOH HOH . D 4 HOH A 24 424 418 HOH HOH . D 4 HOH A 25 425 419 HOH HOH . D 4 HOH A 26 426 424 HOH HOH . D 4 HOH A 27 427 422 HOH HOH . D 4 HOH A 28 428 425 HOH HOH . D 4 HOH A 29 429 423 HOH HOH . D 4 HOH A 30 430 421 HOH HOH . D 4 HOH A 31 431 434 HOH HOH . D 4 HOH A 32 432 437 HOH HOH . D 4 HOH A 33 433 432 HOH HOH . D 4 HOH A 34 434 457 HOH HOH . D 4 HOH A 35 435 409 HOH HOH . D 4 HOH A 36 436 428 HOH HOH . D 4 HOH A 37 437 440 HOH HOH . D 4 HOH A 38 438 446 HOH HOH . D 4 HOH A 39 439 597 HOH HOH . D 4 HOH A 40 440 448 HOH HOH . D 4 HOH A 41 441 461 HOH HOH . D 4 HOH A 42 442 544 HOH HOH . D 4 HOH A 43 443 408 HOH HOH . D 4 HOH A 44 444 435 HOH HOH . D 4 HOH A 45 445 612 HOH HOH . D 4 HOH A 46 446 441 HOH HOH . D 4 HOH A 47 447 512 HOH HOH . D 4 HOH A 48 448 438 HOH HOH . D 4 HOH A 49 449 431 HOH HOH . D 4 HOH A 50 450 442 HOH HOH . D 4 HOH A 51 451 491 HOH HOH . D 4 HOH A 52 452 449 HOH HOH . D 4 HOH A 53 453 456 HOH HOH . D 4 HOH A 54 454 451 HOH HOH . D 4 HOH A 55 455 452 HOH HOH . D 4 HOH A 56 456 413 HOH HOH . D 4 HOH A 57 457 450 HOH HOH . D 4 HOH A 58 458 444 HOH HOH . D 4 HOH A 59 459 416 HOH HOH . D 4 HOH A 60 460 479 HOH HOH . D 4 HOH A 61 461 467 HOH HOH . D 4 HOH A 62 462 466 HOH HOH . D 4 HOH A 63 463 458 HOH HOH . D 4 HOH A 64 464 552 HOH HOH . D 4 HOH A 65 465 433 HOH HOH . D 4 HOH A 66 466 447 HOH HOH . D 4 HOH A 67 467 477 HOH HOH . D 4 HOH A 68 468 471 HOH HOH . D 4 HOH A 69 469 474 HOH HOH . D 4 HOH A 70 470 482 HOH HOH . D 4 HOH A 71 471 439 HOH HOH . D 4 HOH A 72 472 453 HOH HOH . D 4 HOH A 73 473 463 HOH HOH . D 4 HOH A 74 474 462 HOH HOH . D 4 HOH A 75 475 470 HOH HOH . D 4 HOH A 76 476 489 HOH HOH . D 4 HOH A 77 477 455 HOH HOH . D 4 HOH A 78 478 459 HOH HOH . D 4 HOH A 79 479 480 HOH HOH . D 4 HOH A 80 480 465 HOH HOH . D 4 HOH A 81 481 481 HOH HOH . D 4 HOH A 82 482 506 HOH HOH . D 4 HOH A 83 483 484 HOH HOH . D 4 HOH A 84 484 523 HOH HOH . D 4 HOH A 85 485 554 HOH HOH . D 4 HOH A 86 486 476 HOH HOH . D 4 HOH A 87 487 486 HOH HOH . D 4 HOH A 88 488 430 HOH HOH . D 4 HOH A 89 489 500 HOH HOH . D 4 HOH A 90 490 478 HOH HOH . D 4 HOH A 91 491 475 HOH HOH . D 4 HOH A 92 492 528 HOH HOH . D 4 HOH A 93 493 498 HOH HOH . D 4 HOH A 94 494 499 HOH HOH . D 4 HOH A 95 495 445 HOH HOH . D 4 HOH A 96 496 469 HOH HOH . D 4 HOH A 97 497 473 HOH HOH . D 4 HOH A 98 498 468 HOH HOH . D 4 HOH A 99 499 483 HOH HOH . D 4 HOH A 100 500 560 HOH HOH . D 4 HOH A 101 501 488 HOH HOH . D 4 HOH A 102 502 515 HOH HOH . D 4 HOH A 103 503 494 HOH HOH . D 4 HOH A 104 504 508 HOH HOH . D 4 HOH A 105 505 513 HOH HOH . D 4 HOH A 106 506 520 HOH HOH . D 4 HOH A 107 507 502 HOH HOH . D 4 HOH A 108 508 492 HOH HOH . D 4 HOH A 109 509 414 HOH HOH . D 4 HOH A 110 510 501 HOH HOH . D 4 HOH A 111 511 497 HOH HOH . D 4 HOH A 112 512 504 HOH HOH . D 4 HOH A 113 513 536 HOH HOH . D 4 HOH A 114 514 507 HOH HOH . D 4 HOH A 115 515 516 HOH HOH . D 4 HOH A 116 516 559 HOH HOH . D 4 HOH A 117 517 493 HOH HOH . D 4 HOH A 118 518 525 HOH HOH . D 4 HOH A 119 519 530 HOH HOH . D 4 HOH A 120 520 535 HOH HOH . D 4 HOH A 121 521 531 HOH HOH . D 4 HOH A 122 522 464 HOH HOH . D 4 HOH A 123 523 529 HOH HOH . D 4 HOH A 124 524 566 HOH HOH . D 4 HOH A 125 525 495 HOH HOH . D 4 HOH A 126 526 532 HOH HOH . D 4 HOH A 127 527 548 HOH HOH . D 4 HOH A 128 528 553 HOH HOH . D 4 HOH A 129 529 524 HOH HOH . D 4 HOH A 130 530 526 HOH HOH . D 4 HOH A 131 531 510 HOH HOH . D 4 HOH A 132 532 527 HOH HOH . D 4 HOH A 133 533 533 HOH HOH . D 4 HOH A 134 534 436 HOH HOH . D 4 HOH A 135 535 505 HOH HOH . D 4 HOH A 136 536 537 HOH HOH . D 4 HOH A 137 537 540 HOH HOH . D 4 HOH A 138 538 534 HOH HOH . D 4 HOH A 139 539 521 HOH HOH . D 4 HOH A 140 540 517 HOH HOH . D 4 HOH A 141 541 546 HOH HOH . D 4 HOH A 142 542 578 HOH HOH . D 4 HOH A 143 543 551 HOH HOH . D 4 HOH A 144 544 522 HOH HOH . D 4 HOH A 145 545 550 HOH HOH . D 4 HOH A 146 546 487 HOH HOH . D 4 HOH A 147 547 539 HOH HOH . D 4 HOH A 148 548 538 HOH HOH . D 4 HOH A 149 549 514 HOH HOH . D 4 HOH A 150 550 556 HOH HOH . D 4 HOH A 151 551 562 HOH HOH . D 4 HOH A 152 552 557 HOH HOH . D 4 HOH A 153 553 568 HOH HOH . D 4 HOH A 154 554 567 HOH HOH . D 4 HOH A 155 555 549 HOH HOH . D 4 HOH A 156 556 545 HOH HOH . D 4 HOH A 157 557 547 HOH HOH . D 4 HOH A 158 558 519 HOH HOH . D 4 HOH A 159 559 542 HOH HOH . D 4 HOH A 160 560 543 HOH HOH . D 4 HOH A 161 561 518 HOH HOH . D 4 HOH A 162 562 569 HOH HOH . D 4 HOH A 163 563 541 HOH HOH . D 4 HOH A 164 564 561 HOH HOH . D 4 HOH A 165 565 563 HOH HOH . D 4 HOH A 166 566 555 HOH HOH . D 4 HOH A 167 567 558 HOH HOH . D 4 HOH A 168 568 574 HOH HOH . D 4 HOH A 169 569 583 HOH HOH . D 4 HOH A 170 570 573 HOH HOH . D 4 HOH A 171 571 509 HOH HOH . D 4 HOH A 172 572 565 HOH HOH . D 4 HOH A 173 573 589 HOH HOH . D 4 HOH A 174 574 496 HOH HOH . D 4 HOH A 175 575 584 HOH HOH . D 4 HOH A 176 576 581 HOH HOH . D 4 HOH A 177 577 607 HOH HOH . D 4 HOH A 178 578 629 HOH HOH . D 4 HOH A 179 579 572 HOH HOH . D 4 HOH A 180 580 579 HOH HOH . D 4 HOH A 181 581 585 HOH HOH . D 4 HOH A 182 582 580 HOH HOH . D 4 HOH A 183 583 575 HOH HOH . D 4 HOH A 184 584 621 HOH HOH . D 4 HOH A 185 585 571 HOH HOH . D 4 HOH A 186 586 588 HOH HOH . D 4 HOH A 187 587 587 HOH HOH . D 4 HOH A 188 588 600 HOH HOH . D 4 HOH A 189 589 576 HOH HOH . D 4 HOH A 190 590 599 HOH HOH . D 4 HOH A 191 591 426 HOH HOH . D 4 HOH A 192 592 598 HOH HOH . D 4 HOH A 193 593 594 HOH HOH . D 4 HOH A 194 594 593 HOH HOH . D 4 HOH A 195 595 596 HOH HOH . D 4 HOH A 196 596 601 HOH HOH . D 4 HOH A 197 597 595 HOH HOH . D 4 HOH A 198 598 635 HOH HOH . D 4 HOH A 199 599 592 HOH HOH . D 4 HOH A 200 600 591 HOH HOH . D 4 HOH A 201 601 602 HOH HOH . D 4 HOH A 202 602 603 HOH HOH . D 4 HOH A 203 603 605 HOH HOH . D 4 HOH A 204 604 606 HOH HOH . D 4 HOH A 205 605 564 HOH HOH . D 4 HOH A 206 606 611 HOH HOH . D 4 HOH A 207 607 610 HOH HOH . D 4 HOH A 208 608 616 HOH HOH . D 4 HOH A 209 609 613 HOH HOH . D 4 HOH A 210 610 614 HOH HOH . D 4 HOH A 211 611 620 HOH HOH . D 4 HOH A 212 612 619 HOH HOH . D 4 HOH A 213 613 608 HOH HOH . D 4 HOH A 214 614 586 HOH HOH . D 4 HOH A 215 615 625 HOH HOH . D 4 HOH A 216 616 628 HOH HOH . D 4 HOH A 217 617 460 HOH HOH . D 4 HOH A 218 618 577 HOH HOH . D 4 HOH A 219 619 617 HOH HOH . D 4 HOH A 220 620 618 HOH HOH . D 4 HOH A 221 621 624 HOH HOH . D 4 HOH A 222 622 627 HOH HOH . D 4 HOH A 223 623 609 HOH HOH . D 4 HOH A 224 624 604 HOH HOH . D 4 HOH A 225 625 630 HOH HOH . D 4 HOH A 226 626 623 HOH HOH . D 4 HOH A 227 627 634 HOH HOH . D 4 HOH A 228 628 633 HOH HOH . D 4 HOH A 229 629 639 HOH HOH . D 4 HOH A 230 630 643 HOH HOH . D 4 HOH A 231 631 640 HOH HOH . D 4 HOH A 232 632 636 HOH HOH . D 4 HOH A 233 633 644 HOH HOH . D 4 HOH A 234 634 645 HOH HOH . D 4 HOH A 235 635 637 HOH HOH . D 4 HOH A 236 636 638 HOH HOH . D 4 HOH A 237 637 631 HOH HOH . D 4 HOH A 238 638 632 HOH HOH . D 4 HOH A 239 639 641 HOH HOH . D 4 HOH A 240 640 647 HOH HOH . D 4 HOH A 241 641 646 HOH HOH . D 4 HOH A 242 642 649 HOH HOH . D 4 HOH A 243 643 652 HOH HOH . D 4 HOH A 244 644 648 HOH HOH . D 4 HOH A 245 645 642 HOH HOH . D 4 HOH A 246 646 655 HOH HOH . D 4 HOH A 247 647 651 HOH HOH . D 4 HOH A 248 648 654 HOH HOH . D 4 HOH A 249 649 653 HOH HOH . D 4 HOH A 250 650 657 HOH HOH . D 4 HOH A 251 651 658 HOH HOH . D 4 HOH A 252 652 626 HOH HOH . D 4 HOH A 253 653 660 HOH HOH . D 4 HOH A 254 654 659 HOH HOH . D 4 HOH A 255 655 662 HOH HOH . D 4 HOH A 256 656 661 HOH HOH . D 4 HOH A 257 657 666 HOH HOH . D 4 HOH A 258 658 664 HOH HOH . D 4 HOH A 259 659 665 HOH HOH . D 4 HOH A 260 660 663 HOH HOH . D 4 HOH A 261 661 667 HOH HOH . D 4 HOH A 262 662 668 HOH HOH . D 4 HOH A 263 663 670 HOH HOH . D 4 HOH A 264 664 671 HOH HOH . D 4 HOH A 265 665 669 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 23.669 -8.904 15.433 1 24.46 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . B 2 22.847 -9.307 16.642 1 16.73 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . B 2 23.048 -9.937 14.615 1 21.38 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . B 2 23.535 -9.833 13.125 1 15.06 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . B 2 23.428 -11.405 15.008 1 24.15 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . B 2 22.816 -12.443 14.144 1 30.27 ? O3 GOL 301 A 1 HETATM 7 H H11 GOL . . . B 2 23.462 -7.899 15.065 1 20.31 ? H11 GOL 301 A 1 HETATM 8 H H12 GOL . . . B 2 24.74 -9.072 15.564 1 21.99 ? H12 GOL 301 A 1 HETATM 9 H HO1 GOL . . . B 2 23.079 -8.743 17.395 0 16.58 ? HO1 GOL 301 A 1 HETATM 10 H H2 GOL . . . B 2 21.954 -9.828 14.65 1 21.07 ? H2 GOL 301 A 1 HETATM 11 H HO2 GOL . . . B 2 24.489 -9.991 13.086 0 15.03 ? HO2 GOL 301 A 1 HETATM 12 H H31 GOL . . . B 2 24.514 -11.504 14.959 1 24.34 ? H31 GOL 301 A 1 HETATM 13 H H32 GOL . . . B 2 23.129 -11.608 16.038 1 25.75 ? H32 GOL 301 A 1 HETATM 14 H HO3 GOL . . . B 2 22.015 -12.099 13.752 1 24.08 ? HO3 GOL 301 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #