data_6LVF # _model_server_result.job_id 7X89zJpGmXX060hr4xRacg _model_server_result.datetime_utc '2024-11-21 13:44:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 6LVF # _exptl.entry_id 6LVF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 851.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-3-[[(2~{S})-3-[(2~{S})-2,6-bis(azanyl)hexanoyl]oxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxy-2-hexadecanoyloxy-propyl] hexadecanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LVF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C44 H87 N2 O11 P' _chem_comp.formula_weight 851.142 _chem_comp.id EV9 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-3-[[(2~{S})-3-[(2~{S})-2,6-bis(azanyl)hexanoyl]oxy-2-oxidanyl-propoxy]-oxidanyl-phosphoryl]oxy-2-hexadecanoyloxy-propyl] hexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O24 P23 EV9 doub 83 n n C19 O18 EV9 sing 84 n n C19 C20 EV9 sing 85 n n O18 C16 EV9 sing 86 n n P23 O22 EV9 sing 87 n n P23 O25 EV9 sing 88 n n P23 O26 EV9 sing 89 n n O43 C42 EV9 doub 90 n n O22 C21 EV9 sing 91 n n O41 C20 EV9 sing 92 n n O41 C42 EV9 sing 93 n n C15 C16 EV9 sing 94 n n C15 C14 EV9 sing 95 n n C21 C20 EV9 sing 96 n n C16 O17 EV9 doub 97 n n C42 C44 EV9 sing 98 n n O26 C27 EV9 sing 99 n n C13 C14 EV9 sing 100 n n C13 C12 EV9 sing 101 n n C12 C11 EV9 sing 102 n n C10 C11 EV9 sing 103 n n C10 C09 EV9 sing 104 n n C44 C45 EV9 sing 105 n n C27 C28 EV9 sing 106 n n C45 C46 EV9 sing 107 n n C09 C08 EV9 sing 108 n n O40 C28 EV9 sing 109 n n C28 C29 EV9 sing 110 n n C46 C47 EV9 sing 111 n n C08 C07 EV9 sing 112 n n C47 C48 EV9 sing 113 n n N38 C37 EV9 sing 114 n n C29 O30 EV9 sing 115 n n C07 C06 EV9 sing 116 n n O30 C31 EV9 sing 117 n n C37 C36 EV9 sing 118 n n C48 C49 EV9 sing 119 n n C49 C50 EV9 sing 120 n n C06 C05 EV9 sing 121 n n C36 C35 EV9 sing 122 n n C35 C34 EV9 sing 123 n n C31 O32 EV9 doub 124 n n C31 C33 EV9 sing 125 n n C05 C04 EV9 sing 126 n n C33 C34 EV9 sing 127 n n C33 N39 EV9 sing 128 n n C50 C51 EV9 sing 129 n n C51 C52 EV9 sing 130 n n C04 C03 EV9 sing 131 n n C53 C52 EV9 sing 132 n n C53 C54 EV9 sing 133 n n C03 C02 EV9 sing 134 n n C54 C55 EV9 sing 135 n n C02 C01 EV9 sing 136 n n C55 C56 EV9 sing 137 n n C56 C57 EV9 sing 138 n n C57 C58 EV9 sing 139 n n C10 H1 EV9 sing 140 n n C10 H2 EV9 sing 141 n n C13 H3 EV9 sing 142 n n C13 H4 EV9 sing 143 n n C15 H5 EV9 sing 144 n n C15 H6 EV9 sing 145 n n C20 H7 EV9 sing 146 n n C21 H8 EV9 sing 147 n n C21 H9 EV9 sing 148 n n C28 H10 EV9 sing 149 n n C01 H11 EV9 sing 150 n n C01 H12 EV9 sing 151 n n C01 H13 EV9 sing 152 n n C02 H14 EV9 sing 153 n n C02 H15 EV9 sing 154 n n C03 H16 EV9 sing 155 n n C03 H17 EV9 sing 156 n n C04 H18 EV9 sing 157 n n C04 H19 EV9 sing 158 n n C05 H20 EV9 sing 159 n n C05 H21 EV9 sing 160 n n C06 H22 EV9 sing 161 n n C06 H23 EV9 sing 162 n n C07 H24 EV9 sing 163 n n C07 H25 EV9 sing 164 n n C08 H26 EV9 sing 165 n n C08 H27 EV9 sing 166 n n C09 H28 EV9 sing 167 n n C09 H29 EV9 sing 168 n n C11 H30 EV9 sing 169 n n C11 H31 EV9 sing 170 n n C12 H32 EV9 sing 171 n n C12 H33 EV9 sing 172 n n C14 H34 EV9 sing 173 n n C14 H35 EV9 sing 174 n n C19 H36 EV9 sing 175 n n C19 H37 EV9 sing 176 n n C27 H38 EV9 sing 177 n n C27 H39 EV9 sing 178 n n C29 H40 EV9 sing 179 n n C29 H41 EV9 sing 180 n n C33 H42 EV9 sing 181 n n C34 H43 EV9 sing 182 n n C34 H44 EV9 sing 183 n n C35 H45 EV9 sing 184 n n C35 H46 EV9 sing 185 n n C36 H47 EV9 sing 186 n n C36 H48 EV9 sing 187 n n C37 H49 EV9 sing 188 n n C37 H50 EV9 sing 189 n n C44 H51 EV9 sing 190 n n C44 H52 EV9 sing 191 n n C45 H53 EV9 sing 192 n n C45 H54 EV9 sing 193 n n C46 H55 EV9 sing 194 n n C46 H56 EV9 sing 195 n n C47 H57 EV9 sing 196 n n C47 H58 EV9 sing 197 n n C48 H59 EV9 sing 198 n n C48 H60 EV9 sing 199 n n C49 H61 EV9 sing 200 n n C49 H62 EV9 sing 201 n n C50 H63 EV9 sing 202 n n C50 H64 EV9 sing 203 n n C51 H65 EV9 sing 204 n n C51 H66 EV9 sing 205 n n C52 H67 EV9 sing 206 n n C52 H68 EV9 sing 207 n n C53 H69 EV9 sing 208 n n C53 H70 EV9 sing 209 n n C54 H71 EV9 sing 210 n n C54 H72 EV9 sing 211 n n C55 H73 EV9 sing 212 n n C55 H74 EV9 sing 213 n n C56 H75 EV9 sing 214 n n C56 H76 EV9 sing 215 n n C57 H77 EV9 sing 216 n n C57 H78 EV9 sing 217 n n C58 H79 EV9 sing 218 n n C58 H80 EV9 sing 219 n n C58 H81 EV9 sing 220 n n N38 H82 EV9 sing 221 n n N38 H83 EV9 sing 222 n n N39 H85 EV9 sing 223 n n N39 H86 EV9 sing 224 n n O25 H88 EV9 sing 225 n n O40 H89 EV9 sing 226 n n # _atom_sites.entry_id 6LVF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EV9 B 1 1001 1001 EV9 LIG . D 3 LHG B 1 1002 1002 LHG LHG . E 4 PGT B 1 1003 1101 PGT PGT . F 2 EV9 A 1 1001 1001 EV9 LIG . G 3 LHG A 1 1002 1002 LHG LHG . H 4 PGT A 1 1003 1101 PGT PGT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 EV9 . . . C 2 117.78 86.915 101.754 1 31.29 ? C10 EV9 1001 B 1 HETATM 2 C C13 EV9 . . . C 2 116.64 83.202 101.486 1 31.29 ? C13 EV9 1001 B 1 HETATM 3 C C15 EV9 . . . C 2 114.995 81.779 100.182 1 31.29 ? C15 EV9 1001 B 1 HETATM 4 C C20 EV9 . . . C 2 111.309 82.619 100.299 1 31.29 ? C20 EV9 1001 B 1 HETATM 5 C C21 EV9 . . . C 2 110.136 81.649 100.238 1 31.29 ? C21 EV9 1001 B 1 HETATM 6 C C28 EV9 . . . C 2 105.88 81.658 103.165 1 31.29 ? C28 EV9 1001 B 1 HETATM 7 C C01 EV9 . . . C 2 119.762 86.936 111.976 0 31.29 ? C01 EV9 1001 B 1 HETATM 8 C C02 EV9 . . . C 2 120.347 87.914 110.962 0 31.29 ? C02 EV9 1001 B 1 HETATM 9 C C03 EV9 . . . C 2 120.136 87.452 109.523 0 31.29 ? C03 EV9 1001 B 1 HETATM 10 C C04 EV9 . . . C 2 119.662 88.587 108.618 1 31.29 ? C04 EV9 1001 B 1 HETATM 11 C C05 EV9 . . . C 2 120.255 88.499 107.214 1 31.29 ? C05 EV9 1001 B 1 HETATM 12 C C06 EV9 . . . C 2 119.231 88.839 106.133 1 31.29 ? C06 EV9 1001 B 1 HETATM 13 C C07 EV9 . . . C 2 119.692 88.413 104.744 1 31.29 ? C07 EV9 1001 B 1 HETATM 14 C C08 EV9 . . . C 2 118.521 88.215 103.788 1 31.29 ? C08 EV9 1001 B 1 HETATM 15 C C09 EV9 . . . C 2 118.947 87.575 102.474 1 31.29 ? C09 EV9 1001 B 1 HETATM 16 C C11 EV9 . . . C 2 117.883 85.389 101.761 1 31.29 ? C11 EV9 1001 B 1 HETATM 17 C C12 EV9 . . . C 2 116.522 84.722 101.604 1 31.29 ? C12 EV9 1001 B 1 HETATM 18 C C14 EV9 . . . C 2 115.27 82.527 101.487 1 31.29 ? C14 EV9 1001 B 1 HETATM 19 C C16 EV9 . . . C 2 113.748 80.892 100.298 1 31.29 ? C16 EV9 1001 B 1 HETATM 20 C C19 EV9 . . . C 2 112.27 82.296 99.157 1 31.29 ? C19 EV9 1001 B 1 HETATM 21 C C27 EV9 . . . C 2 107.037 81.472 102.197 1 31.29 ? C27 EV9 1001 B 1 HETATM 22 C C29 EV9 . . . C 2 106.43 81.565 104.581 1 31.29 ? C29 EV9 1001 B 1 HETATM 23 C C31 EV9 . . . C 2 105.732 80.705 106.632 1 31.29 ? C31 EV9 1001 B 1 HETATM 24 C C33 EV9 . . . C 2 104.426 80.779 107.403 1 31.29 ? C33 EV9 1001 B 1 HETATM 25 C C34 EV9 . . . C 2 104.012 82.235 107.51 1 31.29 ? C34 EV9 1001 B 1 HETATM 26 C C35 EV9 . . . C 2 103.28 82.734 106.274 1 31.29 ? C35 EV9 1001 B 1 HETATM 27 C C36 EV9 . . . C 2 103.317 84.261 106.187 1 31.29 ? C36 EV9 1001 B 1 HETATM 28 C C37 EV9 . . . C 2 102.174 84.797 105.331 1 31.29 ? C37 EV9 1001 B 1 HETATM 29 C C42 EV9 . . . C 2 111.891 84.828 100.521 1 31.29 ? C42 EV9 1001 B 1 HETATM 30 C C44 EV9 . . . C 2 112.399 84.856 101.963 1 31.29 ? C44 EV9 1001 B 1 HETATM 31 C C45 EV9 . . . C 2 113.049 86.187 102.336 1 31.29 ? C45 EV9 1001 B 1 HETATM 32 C C46 EV9 . . . C 2 112.54 86.725 103.67 1 31.29 ? C46 EV9 1001 B 1 HETATM 33 C C47 EV9 . . . C 2 113.362 87.925 104.108 1 31.29 ? C47 EV9 1001 B 1 HETATM 34 C C48 EV9 . . . C 2 112.976 88.442 105.478 1 31.29 ? C48 EV9 1001 B 1 HETATM 35 C C49 EV9 . . . C 2 114.054 89.37 106.01 1 31.29 ? C49 EV9 1001 B 1 HETATM 36 C C50 EV9 . . . C 2 113.939 89.564 107.512 1 31.29 ? C50 EV9 1001 B 1 HETATM 37 C C51 EV9 . . . C 2 112.626 90.235 107.891 1 31.29 ? C51 EV9 1001 B 1 HETATM 38 C C52 EV9 . . . C 2 112.729 91.017 109.189 1 31.29 ? C52 EV9 1001 B 1 HETATM 39 C C53 EV9 . . . C 2 112.109 92.399 109.089 1 31.29 ? C53 EV9 1001 B 1 HETATM 40 C C54 EV9 . . . C 2 113.052 93.447 109.644 1 31.29 ? C54 EV9 1001 B 1 HETATM 41 C C55 EV9 . . . C 2 113.094 93.372 111.157 1 31.29 ? C55 EV9 1001 B 1 HETATM 42 C C56 EV9 . . . C 2 114.495 93.149 111.704 1 31.29 ? C56 EV9 1001 B 1 HETATM 43 C C57 EV9 . . . C 2 114.47 92.861 113.2 1 31.29 ? C57 EV9 1001 B 1 HETATM 44 C C58 EV9 . . . C 2 115.518 91.84 113.622 1 31.29 ? C58 EV9 1001 B 1 HETATM 45 N N38 EV9 . . . C 2 101.857 83.861 104.26 1 31.29 ? N38 EV9 1001 B 1 HETATM 46 N N39 EV9 . . . C 2 104.641 80.242 108.732 1 31.29 ? N39 EV9 1001 B 1 HETATM 47 O O17 EV9 . . . C 2 113.635 80.146 101.206 1 31.29 ? O17 EV9 1001 B 1 HETATM 48 O O18 EV9 . . . C 2 112.726 80.979 99.33 1 31.29 ? O18 EV9 1001 B 1 HETATM 49 O O22 EV9 . . . C 2 108.983 82.309 99.798 1 31.29 ? O22 EV9 1001 B 1 HETATM 50 O O24 EV9 . . . C 2 106.994 81.477 98.352 1 31.29 ? O24 EV9 1001 B 1 HETATM 51 O O25 EV9 . . . C 2 108.116 79.92 99.878 1 31.29 ? O25 EV9 1001 B 1 HETATM 52 O O26 EV9 . . . C 2 106.602 81.714 100.891 1 31.29 ? O26 EV9 1001 B 1 HETATM 53 O O30 EV9 . . . C 2 105.717 80.563 105.245 1 31.29 ? O30 EV9 1001 B 1 HETATM 54 O O32 EV9 . . . C 2 106.753 80.771 107.208 1 31.29 ? O32 EV9 1001 B 1 HETATM 55 O O40 EV9 . . . C 2 104.962 80.634 102.966 1 31.29 ? O40 EV9 1001 B 1 HETATM 56 O O41 EV9 . . . C 2 110.876 83.929 100.175 1 31.29 ? O41 EV9 1001 B 1 HETATM 57 O O43 EV9 . . . C 2 112.369 85.544 99.71 1 31.29 ? O43 EV9 1001 B 1 HETATM 58 P P23 EV9 . . . C 2 107.656 81.336 99.692 1 31.29 ? P23 EV9 1001 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 58 #