data_6LVF
#
_model_server_result.job_id            18WcOIY72bCuvzqxq6ga5w 
_model_server_result.datetime_utc      '2024-11-21 13:58:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lvf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    6LVF 
#
_exptl.entry_id    6LVF 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              722.97 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6LVF 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LVF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
_chem_comp.formula           'C38 H75 O10 P' 
_chem_comp.formula_weight    722.97 
_chem_comp.id                LHG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 LHG sing 336 n n 
O1 HO1 LHG sing 337 n n 
C1 C2 LHG sing 338 n n 
C1 HC11 LHG sing 339 n n 
C1 HC12 LHG sing 340 n n 
C2 O2 LHG sing 341 n n 
C2 C3 LHG sing 342 n n 
C2 HC2 LHG sing 343 n n 
O2 H02 LHG sing 344 n n 
C3 O3 LHG sing 345 n n 
C3 HC31 LHG sing 346 n n 
C3 HC32 LHG sing 347 n n 
O3 P LHG sing 348 n n 
P O4 LHG sing 349 n n 
P O5 LHG doub 350 n n 
P O6 LHG sing 351 n n 
O4 HO4 LHG sing 352 n n 
O6 C4 LHG sing 353 n n 
C4 C5 LHG sing 354 n n 
C4 HC41 LHG sing 355 n n 
C4 HC42 LHG sing 356 n n 
C5 C6 LHG sing 357 n n 
C5 O7 LHG sing 358 n n 
C5 HC5 LHG sing 359 n n 
C6 O8 LHG sing 360 n n 
C6 HC61 LHG sing 361 n n 
C6 HC62 LHG sing 362 n n 
O7 C7 LHG sing 363 n n 
C7 O9 LHG doub 364 n n 
C7 C8 LHG sing 365 n n 
C8 C9 LHG sing 366 n n 
C8 HC81 LHG sing 367 n n 
C8 HC82 LHG sing 368 n n 
C9 C10 LHG sing 369 n n 
C9 HC91 LHG sing 370 n n 
C9 HC92 LHG sing 371 n n 
C10 C11 LHG sing 372 n n 
C10 H101 LHG sing 373 n n 
C10 H102 LHG sing 374 n n 
O8 C23 LHG sing 375 n n 
C23 O10 LHG doub 376 n n 
C23 C24 LHG sing 377 n n 
C24 C25 LHG sing 378 n n 
C24 H241 LHG sing 379 n n 
C24 H242 LHG sing 380 n n 
C11 C12 LHG sing 381 n n 
C11 H111 LHG sing 382 n n 
C11 H112 LHG sing 383 n n 
C12 C13 LHG sing 384 n n 
C12 H121 LHG sing 385 n n 
C12 H122 LHG sing 386 n n 
C13 C14 LHG sing 387 n n 
C13 H131 LHG sing 388 n n 
C13 H132 LHG sing 389 n n 
C14 C15 LHG sing 390 n n 
C14 H141 LHG sing 391 n n 
C14 H142 LHG sing 392 n n 
C15 C16 LHG sing 393 n n 
C15 H151 LHG sing 394 n n 
C15 H152 LHG sing 395 n n 
C16 C17 LHG sing 396 n n 
C16 H161 LHG sing 397 n n 
C16 H162 LHG sing 398 n n 
C17 C18 LHG sing 399 n n 
C17 H171 LHG sing 400 n n 
C17 H172 LHG sing 401 n n 
C18 C19 LHG sing 402 n n 
C18 H181 LHG sing 403 n n 
C18 H182 LHG sing 404 n n 
C19 C20 LHG sing 405 n n 
C19 H191 LHG sing 406 n n 
C19 H192 LHG sing 407 n n 
C20 C21 LHG sing 408 n n 
C20 H201 LHG sing 409 n n 
C20 H202 LHG sing 410 n n 
C21 C22 LHG sing 411 n n 
C21 H211 LHG sing 412 n n 
C21 H212 LHG sing 413 n n 
C22 H221 LHG sing 414 n n 
C22 H222 LHG sing 415 n n 
C22 H223 LHG sing 416 n n 
C25 C26 LHG sing 417 n n 
C25 H251 LHG sing 418 n n 
C25 H252 LHG sing 419 n n 
C26 C27 LHG sing 420 n n 
C26 H261 LHG sing 421 n n 
C26 H262 LHG sing 422 n n 
C27 C28 LHG sing 423 n n 
C27 H271 LHG sing 424 n n 
C27 H272 LHG sing 425 n n 
C28 C29 LHG sing 426 n n 
C28 H281 LHG sing 427 n n 
C28 H282 LHG sing 428 n n 
C29 C30 LHG sing 429 n n 
C29 H291 LHG sing 430 n n 
C29 H292 LHG sing 431 n n 
C30 C31 LHG sing 432 n n 
C30 H301 LHG sing 433 n n 
C30 H302 LHG sing 434 n n 
C31 C32 LHG sing 435 n n 
C31 H311 LHG sing 436 n n 
C31 H312 LHG sing 437 n n 
C32 C33 LHG sing 438 n n 
C32 H321 LHG sing 439 n n 
C32 H322 LHG sing 440 n n 
C33 C34 LHG sing 441 n n 
C33 H331 LHG sing 442 n n 
C33 H332 LHG sing 443 n n 
C34 C35 LHG sing 444 n n 
C34 H341 LHG sing 445 n n 
C34 H342 LHG sing 446 n n 
C35 C36 LHG sing 447 n n 
C35 H351 LHG sing 448 n n 
C35 H352 LHG sing 449 n n 
C36 C37 LHG sing 450 n n 
C36 H361 LHG sing 451 n n 
C36 H362 LHG sing 452 n n 
C37 C38 LHG sing 453 n n 
C37 H371 LHG sing 454 n n 
C37 H372 LHG sing 455 n n 
C38 H381 LHG sing 456 n n 
C38 H382 LHG sing 457 n n 
C38 H383 LHG sing 458 n n 
#
_atom_sites.entry_id                     6LVF 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EV9 B 1 1001 1001 EV9 LIG . 
D 3 LHG B 1 1002 1002 LHG LHG . 
E 4 PGT B 1 1003 1101 PGT PGT . 
F 2 EV9 A 1 1001 1001 EV9 LIG . 
G 3 LHG A 1 1002 1002 LHG LHG . 
H 4 PGT A 1 1003 1101 PGT PGT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 LHG . . . D 3 106.342 103.16 85.931 1 48.81 ? O1 LHG 1002 B 1 
HETATM 2 C C1 LHG . . . D 3 106.779 104.288 86.694 1 48.81 ? C1 LHG 1002 B 1 
HETATM 3 C C2 LHG . . . D 3 108.239 104.104 87.068 1 48.81 ? C2 LHG 1002 B 1 
HETATM 4 O O2 LHG . . . D 3 108.342 103.044 88.016 1 48.81 ? O2 LHG 1002 B 1 
HETATM 5 C C3 LHG . . . D 3 108.757 105.365 87.731 1 48.81 ? C3 LHG 1002 B 1 
HETATM 6 O O3 LHG . . . D 3 108.487 105.264 89.122 1 48.81 ? O3 LHG 1002 B 1 
HETATM 7 P P LHG . . . D 3 109.506 105.908 90.18 1 48.81 ? P LHG 1002 B 1 
HETATM 8 O O4 LHG . . . D 3 110.751 105.06 90.228 1 48.81 ? O4 LHG 1002 B 1 
HETATM 9 O O5 LHG . . . D 3 109.6 107.389 89.918 1 48.81 ? O5 LHG 1002 B 1 
HETATM 10 O O6 LHG . . . D 3 108.735 105.703 91.566 1 48.81 ? O6 LHG 1002 B 1 
HETATM 11 C C4 LHG . . . D 3 109.503 105.449 92.73 1 48.81 ? C4 LHG 1002 B 1 
HETATM 12 C C5 LHG . . . D 3 108.764 105.97 93.949 1 48.81 ? C5 LHG 1002 B 1 
HETATM 13 C C6 LHG . . . D 3 107.262 105.8 93.765 1 48.81 ? C6 LHG 1002 B 1 
HETATM 14 O O7 LHG . . . D 3 109.161 105.192 95.071 1 48.81 ? O7 LHG 1002 B 1 
HETATM 15 C C7 LHG . . . D 3 110.393 105.624 95.716 1 48.81 ? C7 LHG 1002 B 1 
HETATM 16 O O9 LHG . . . D 3 110.887 106.705 95.442 1 48.81 ? O9 LHG 1002 B 1 
HETATM 17 C C8 LHG . . . D 3 111.046 104.72 96.734 1 48.81 ? C8 LHG 1002 B 1 
HETATM 18 C C9 LHG . . . D 3 110.038 104.364 97.819 1 48.81 ? C9 LHG 1002 B 1 
HETATM 19 C C10 LHG . . . D 3 110.577 103.307 98.775 1 48.81 ? C10 LHG 1002 B 1 
HETATM 20 O O8 LHG . . . D 3 106.63 106.407 94.882 1 48.81 ? O8 LHG 1002 B 1 
HETATM 21 C C23 LHG . . . D 3 105.711 105.654 95.709 1 48.81 ? C23 LHG 1002 B 1 
HETATM 22 O O10 LHG . . . D 3 105.066 104.745 95.228 1 48.81 ? O10 LHG 1002 B 1 
HETATM 23 C C24 LHG . . . D 3 105.596 105.987 97.171 1 48.81 ? C24 LHG 1002 B 1 
HETATM 24 C C11 LHG . . . D 3 109.579 103.058 99.898 1 48.81 ? C11 LHG 1002 B 1 
HETATM 25 C C12 LHG . . . D 3 110.039 101.966 100.857 1 48.81 ? C12 LHG 1002 B 1 
HETATM 26 C C13 LHG . . . D 3 109.661 100.568 100.381 1 48.81 ? C13 LHG 1002 B 1 
HETATM 27 C C14 LHG . . . D 3 108.18 100.466 100.039 1 48.81 ? C14 LHG 1002 B 1 
HETATM 28 C C15 LHG . . . D 3 107.757 99.032 99.753 1 48.81 ? C15 LHG 1002 B 1 
HETATM 29 C C16 LHG . . . D 3 108.677 98.318 98.771 1 48.81 ? C16 LHG 1002 B 1 
HETATM 30 C C17 LHG . . . D 3 108.084 96.957 98.439 1 48.81 ? C17 LHG 1002 B 1 
HETATM 31 C C18 LHG . . . D 3 108.764 96.291 97.251 1 48.81 ? C18 LHG 1002 B 1 
HETATM 32 C C19 LHG . . . D 3 107.943 95.101 96.771 1 48.81 ? C19 LHG 1002 B 1 
HETATM 33 C C20 LHG . . . D 3 108.588 94.44 95.565 1 48.81 ? C20 LHG 1002 B 1 
HETATM 34 C C21 LHG . . . D 3 107.618 93.474 94.909 1 48.81 ? C21 LHG 1002 B 1 
HETATM 35 C C22 LHG . . . D 3 108.104 93.125 93.526 1 48.81 ? C22 LHG 1002 B 1 
HETATM 36 C C25 LHG . . . D 3 105.665 104.698 97.968 1 48.81 ? C25 LHG 1002 B 1 
HETATM 37 C C26 LHG . . . D 3 105.71 104.985 99.459 1 48.81 ? C26 LHG 1002 B 1 
HETATM 38 C C27 LHG . . . D 3 105.85 103.686 100.24 1 48.81 ? C27 LHG 1002 B 1 
HETATM 39 C C28 LHG . . . D 3 105.698 103.919 101.735 1 48.81 ? C28 LHG 1002 B 1 
HETATM 40 C C29 LHG . . . D 3 104.416 103.283 102.24 1 48.81 ? C29 LHG 1002 B 1 
HETATM 41 C C30 LHG . . . D 3 103.988 103.881 103.57 1 48.81 ? C30 LHG 1002 B 1 
HETATM 42 C C31 LHG . . . D 3 102.596 103.431 104.003 1 48.81 ? C31 LHG 1002 B 1 
HETATM 43 C C32 LHG . . . D 3 102.283 101.978 103.668 1 48.81 ? C32 LHG 1002 B 1 
HETATM 44 C C33 LHG . . . D 3 101.111 101.46 104.491 1 48.81 ? C33 LHG 1002 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           44 
#