data_6LVF # _model_server_result.job_id 2jK6UWqIQqe7w74f8ax-rQ _model_server_result.datetime_utc '2024-11-21 14:38:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lvf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 6LVF # _exptl.entry_id 6LVF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 751.023 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LVF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LVF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C40 H79 O10 P' _chem_comp.formula_weight 751.023 _chem_comp.id PGT _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPHATIDYLGLYCEROL;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C47 PGT sing 502 n n C48 H481 PGT sing 503 n n C48 H482 PGT sing 504 n n C48 H483 PGT sing 505 n n C47 C46 PGT sing 506 n n C47 H471 PGT sing 507 n n C47 H472 PGT sing 508 n n C46 C45 PGT sing 509 n n C46 H461 PGT sing 510 n n C46 H462 PGT sing 511 n n C45 C44 PGT sing 512 n n C45 H451 PGT sing 513 n n C45 H452 PGT sing 514 n n C44 C43 PGT sing 515 n n C44 H441 PGT sing 516 n n C44 H442 PGT sing 517 n n C43 C42 PGT sing 518 n n C43 H431 PGT sing 519 n n C43 H432 PGT sing 520 n n C42 C41 PGT sing 521 n n C42 H421 PGT sing 522 n n C42 H422 PGT sing 523 n n C41 C40 PGT sing 524 n n C41 H411 PGT sing 525 n n C41 H412 PGT sing 526 n n C40 C39 PGT sing 527 n n C40 H401 PGT sing 528 n n C40 H402 PGT sing 529 n n C39 C38 PGT sing 530 n n C39 H391 PGT sing 531 n n C39 H392 PGT sing 532 n n C38 C37 PGT sing 533 n n C38 H381 PGT sing 534 n n C38 H382 PGT sing 535 n n C37 C36 PGT sing 536 n n C37 H371 PGT sing 537 n n C37 H372 PGT sing 538 n n C36 C35 PGT sing 539 n n C36 H361 PGT sing 540 n n C36 H362 PGT sing 541 n n C35 C34 PGT sing 542 n n C35 H351 PGT sing 543 n n C35 H352 PGT sing 544 n n C34 C33 PGT sing 545 n n C34 H341 PGT sing 546 n n C34 H342 PGT sing 547 n n C33 C32 PGT sing 548 n n C33 H331 PGT sing 549 n n C33 H332 PGT sing 550 n n C32 C31 PGT sing 551 n n C32 H321 PGT sing 552 n n C32 H322 PGT sing 553 n n C31 O31 PGT doub 554 n n C31 O2 PGT sing 555 n n O2 C2 PGT sing 556 n n C2 C1 PGT sing 557 n n C2 C3 PGT sing 558 n n C2 H2 PGT sing 559 n n C1 O3P PGT sing 560 n n C1 H11 PGT sing 561 n n C1 H12 PGT sing 562 n n O3P P PGT sing 563 n n P O1P PGT doub 564 n n P O2P PGT sing 565 n n P O4P PGT sing 566 n n O2P HO2P PGT sing 567 n n O4P C4 PGT sing 568 n n C4 C5 PGT sing 569 n n C4 H41 PGT sing 570 n n C4 H42 PGT sing 571 n n C5 O5 PGT sing 572 n n C5 C6 PGT sing 573 n n C5 H5 PGT sing 574 n n O5 HO5 PGT sing 575 n n C6 O6 PGT sing 576 n n C6 H61 PGT sing 577 n n C6 H62 PGT sing 578 n n O6 HO6 PGT sing 579 n n C3 O3 PGT sing 580 n n C3 H31 PGT sing 581 n n C3 H32 PGT sing 582 n n O3 C11 PGT sing 583 n n C11 O11 PGT doub 584 n n C11 C12 PGT sing 585 n n C12 C13 PGT sing 586 n n C12 H121 PGT sing 587 n n C12 H122 PGT sing 588 n n C13 C14 PGT sing 589 n n C13 H131 PGT sing 590 n n C13 H132 PGT sing 591 n n C14 C15 PGT sing 592 n n C14 H141 PGT sing 593 n n C14 H142 PGT sing 594 n n C15 C16 PGT sing 595 n n C15 H151 PGT sing 596 n n C15 H152 PGT sing 597 n n C16 C17 PGT sing 598 n n C16 H161 PGT sing 599 n n C16 H162 PGT sing 600 n n C17 C18 PGT sing 601 n n C17 H171 PGT sing 602 n n C17 H172 PGT sing 603 n n C18 C19 PGT sing 604 n n C18 H181 PGT sing 605 n n C18 H182 PGT sing 606 n n C19 C20 PGT sing 607 n n C19 H191 PGT sing 608 n n C19 H192 PGT sing 609 n n C20 C21 PGT sing 610 n n C20 H201 PGT sing 611 n n C20 H202 PGT sing 612 n n C21 C22 PGT sing 613 n n C21 H211 PGT sing 614 n n C21 H212 PGT sing 615 n n C22 C23 PGT sing 616 n n C22 H221 PGT sing 617 n n C22 H222 PGT sing 618 n n C23 C24 PGT sing 619 n n C23 H231 PGT sing 620 n n C23 H232 PGT sing 621 n n C24 C25 PGT sing 622 n n C24 H241 PGT sing 623 n n C24 H242 PGT sing 624 n n C25 C26 PGT sing 625 n n C25 H251 PGT sing 626 n n C25 H252 PGT sing 627 n n C26 H261 PGT sing 628 n n C26 H262 PGT sing 629 n n C26 H263 PGT sing 630 n n # _atom_sites.entry_id 6LVF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EV9 B 1 1001 1001 EV9 LIG . D 3 LHG B 1 1002 1002 LHG LHG . E 4 PGT B 1 1003 1101 PGT PGT . F 2 EV9 A 1 1001 1001 EV9 LIG . G 3 LHG A 1 1002 1002 LHG LHG . H 4 PGT A 1 1003 1101 PGT PGT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C48 PGT . . . E 4 101.93 99.41 111.369 1 50.29 ? C48 PGT 1003 B 1 HETATM 2 C C47 PGT . . . E 4 101.154 98.55 110.399 1 50.29 ? C47 PGT 1003 B 1 HETATM 3 C C46 PGT . . . E 4 101.936 98.236 109.125 1 50.29 ? C46 PGT 1003 B 1 HETATM 4 C C45 PGT . . . E 4 101.022 97.93 107.939 1 50.29 ? C45 PGT 1003 B 1 HETATM 5 C C44 PGT . . . E 4 99.978 96.863 108.252 1 50.29 ? C44 PGT 1003 B 1 HETATM 6 C C43 PGT . . . E 4 98.553 97.379 108.086 1 50.29 ? C43 PGT 1003 B 1 HETATM 7 C C42 PGT . . . E 4 97.606 96.257 107.683 1 50.29 ? C42 PGT 1003 B 1 HETATM 8 C C41 PGT . . . E 4 96.193 96.466 108.213 1 50.29 ? C41 PGT 1003 B 1 HETATM 9 C C40 PGT . . . E 4 95.211 95.504 107.559 1 50.29 ? C40 PGT 1003 B 1 HETATM 10 C C39 PGT . . . E 4 94.583 94.589 108.596 1 50.29 ? C39 PGT 1003 B 1 HETATM 11 C C38 PGT . . . E 4 93.428 93.789 108.012 1 50.29 ? C38 PGT 1003 B 1 HETATM 12 C C37 PGT . . . E 4 93.034 92.647 108.941 1 50.29 ? C37 PGT 1003 B 1 HETATM 13 C C36 PGT . . . E 4 92.664 93.19 110.309 1 50.29 ? C36 PGT 1003 B 1 HETATM 14 C C35 PGT . . . E 4 92.845 92.152 111.399 1 50.29 ? C35 PGT 1003 B 1 HETATM 15 C C34 PGT . . . E 4 92.832 92.85 112.746 1 50.29 ? C34 PGT 1003 B 1 HETATM 16 C C33 PGT . . . E 4 92.329 91.943 113.854 1 50.29 ? C33 PGT 1003 B 1 HETATM 17 C C32 PGT . . . E 4 91.748 92.793 114.966 1 50.29 ? C32 PGT 1003 B 1 HETATM 18 C C31 PGT . . . E 4 91.353 91.94 116.139 1 50.29 ? C31 PGT 1003 B 1 HETATM 19 O O31 PGT . . . E 4 92.081 91.896 117.11 1 50.29 ? O31 PGT 1003 B 1 HETATM 20 O O2 PGT . . . E 4 90.119 91.169 116.118 1 50.29 ? O2 PGT 1003 B 1 HETATM 21 C C2 PGT . . . E 4 89.297 91.449 117.252 1 50.29 ? C2 PGT 1003 B 1 HETATM 22 C C1 PGT . . . E 4 89.439 90.363 118.298 1 50.29 ? C1 PGT 1003 B 1 HETATM 23 O O3P PGT . . . E 4 90.374 90.82 119.257 1 50.29 ? O3P PGT 1003 B 1 HETATM 24 P P PGT . . . E 4 90.148 90.431 120.79 1 50.29 ? P PGT 1003 B 1 HETATM 25 O O1P PGT . . . E 4 89.273 91.481 121.424 1 50.29 ? O1P PGT 1003 B 1 HETATM 26 O O2P PGT . . . E 4 89.741 88.981 120.836 1 50.29 ? O2P PGT 1003 B 1 HETATM 27 O O4P PGT . . . E 4 91.635 90.539 121.375 1 50.29 ? O4P PGT 1003 B 1 HETATM 28 C C4 PGT . . . E 4 91.875 90.289 122.753 1 50.29 ? C4 PGT 1003 B 1 HETATM 29 C C5 PGT . . . E 4 93.013 89.287 122.858 1 50.29 ? C5 PGT 1003 B 1 HETATM 30 O O5 PGT . . . E 4 93.947 89.524 121.803 1 50.29 ? O5 PGT 1003 B 1 HETATM 31 C C6 PGT . . . E 4 92.445 87.884 122.723 1 50.29 ? C6 PGT 1003 B 1 HETATM 32 O O6 PGT . . . E 4 91.826 87.745 121.443 1 50.29 ? O6 PGT 1003 B 1 HETATM 33 C C3 PGT . . . E 4 87.823 91.503 116.877 1 50.29 ? C3 PGT 1003 B 1 HETATM 34 O O3 PGT . . . E 4 87.65 91.21 115.498 1 50.29 ? O3 PGT 1003 B 1 HETATM 35 C C11 PGT . . . E 4 86.315 91.28 114.939 1 50.29 ? C11 PGT 1003 B 1 HETATM 36 O O11 PGT . . . E 4 85.373 91.529 115.671 1 50.29 ? O11 PGT 1003 B 1 HETATM 37 C C12 PGT . . . E 4 86.112 91.057 113.466 1 50.29 ? C12 PGT 1003 B 1 HETATM 38 C C13 PGT . . . E 4 87.248 91.711 112.692 1 50.29 ? C13 PGT 1003 B 1 HETATM 39 C C14 PGT . . . E 4 87.082 91.384 111.221 1 50.29 ? C14 PGT 1003 B 1 HETATM 40 C C15 PGT . . . E 4 88.132 92.077 110.379 1 50.29 ? C15 PGT 1003 B 1 HETATM 41 C C16 PGT . . . E 4 87.836 91.839 108.909 1 50.29 ? C16 PGT 1003 B 1 HETATM 42 C C17 PGT . . . E 4 88.771 92.672 108.051 1 50.29 ? C17 PGT 1003 B 1 HETATM 43 C C18 PGT . . . E 4 88.02 93.235 106.858 1 50.29 ? C18 PGT 1003 B 1 HETATM 44 C C19 PGT . . . E 4 88.694 94.505 106.359 1 50.29 ? C19 PGT 1003 B 1 HETATM 45 C C20 PGT . . . E 4 90.075 94.209 105.786 1 50.29 ? C20 PGT 1003 B 1 HETATM 46 C C21 PGT . . . E 4 90.582 95.347 104.908 1 50.29 ? C21 PGT 1003 B 1 HETATM 47 C C22 PGT . . . E 4 90.715 94.895 103.458 1 50.29 ? C22 PGT 1003 B 1 HETATM 48 C C23 PGT . . . E 4 89.362 94.78 102.766 1 50.29 ? C23 PGT 1003 B 1 HETATM 49 C C24 PGT . . . E 4 89.358 93.659 101.734 1 50.29 ? C24 PGT 1003 B 1 HETATM 50 C C25 PGT . . . E 4 89.427 92.294 102.41 1 50.29 ? C25 PGT 1003 B 1 HETATM 51 C C26 PGT . . . E 4 89.76 91.198 101.419 1 50.29 ? C26 PGT 1003 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 48 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 1117 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 51 #