data_6LX5 # _model_server_result.job_id jgPRMlZOatcpREPOBQglrw _model_server_result.datetime_utc '2024-11-23 17:32:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lx5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6LX5 # _exptl.entry_id 6LX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.73 _cell.angle_gamma 90 _cell.entry_id 6LX5 _cell.length_a 60.585 _cell.length_b 101.35 _cell.length_c 61.745 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 162 n n C1 C2 GOL sing 163 n n C1 H11 GOL sing 164 n n C1 H12 GOL sing 165 n n O1 HO1 GOL sing 166 n n C2 O2 GOL sing 167 n n C2 C3 GOL sing 168 n n C2 H2 GOL sing 169 n n O2 HO2 GOL sing 170 n n C3 O3 GOL sing 171 n n C3 H31 GOL sing 172 n n C3 H32 GOL sing 173 n n O3 HO3 GOL sing 174 n n # _atom_sites.entry_id 6LX5 _atom_sites.fract_transf_matrix[1][1] 0.016506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003129 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 501 1 GOL GOL . D 3 C5F A 1 502 1 C5F C5F . E 3 C5F A 1 503 3 C5F C5F . F 3 C5F B 1 501 2 C5F C5F . G 3 C5F B 1 502 4 C5F C5F . H 4 HOH A 1 601 71 HOH HOH . H 4 HOH A 2 602 197 HOH HOH . H 4 HOH A 3 603 228 HOH HOH . H 4 HOH A 4 604 75 HOH HOH . H 4 HOH A 5 605 24 HOH HOH . H 4 HOH A 6 606 11 HOH HOH . H 4 HOH A 7 607 241 HOH HOH . H 4 HOH A 8 608 140 HOH HOH . H 4 HOH A 9 609 113 HOH HOH . H 4 HOH A 10 610 215 HOH HOH . H 4 HOH A 11 611 96 HOH HOH . H 4 HOH A 12 612 56 HOH HOH . H 4 HOH A 13 613 245 HOH HOH . H 4 HOH A 14 614 165 HOH HOH . H 4 HOH A 15 615 134 HOH HOH . H 4 HOH A 16 616 229 HOH HOH . H 4 HOH A 17 617 49 HOH HOH . H 4 HOH A 18 618 160 HOH HOH . H 4 HOH A 19 619 21 HOH HOH . H 4 HOH A 20 620 104 HOH HOH . H 4 HOH A 21 621 5 HOH HOH . H 4 HOH A 22 622 236 HOH HOH . H 4 HOH A 23 623 188 HOH HOH . H 4 HOH A 24 624 36 HOH HOH . H 4 HOH A 25 625 137 HOH HOH . H 4 HOH A 26 626 58 HOH HOH . H 4 HOH A 27 627 216 HOH HOH . H 4 HOH A 28 628 4 HOH HOH . H 4 HOH A 29 629 185 HOH HOH . H 4 HOH A 30 630 186 HOH HOH . H 4 HOH A 31 631 179 HOH HOH . H 4 HOH A 32 632 230 HOH HOH . H 4 HOH A 33 633 55 HOH HOH . H 4 HOH A 34 634 109 HOH HOH . H 4 HOH A 35 635 151 HOH HOH . H 4 HOH A 36 636 52 HOH HOH . H 4 HOH A 37 637 114 HOH HOH . H 4 HOH A 38 638 79 HOH HOH . H 4 HOH A 39 639 2 HOH HOH . H 4 HOH A 40 640 28 HOH HOH . H 4 HOH A 41 641 15 HOH HOH . H 4 HOH A 42 642 90 HOH HOH . H 4 HOH A 43 643 74 HOH HOH . H 4 HOH A 44 644 1 HOH HOH . H 4 HOH A 45 645 204 HOH HOH . H 4 HOH A 46 646 247 HOH HOH . H 4 HOH A 47 647 257 HOH HOH . H 4 HOH A 48 648 270 HOH HOH . H 4 HOH A 49 649 12 HOH HOH . H 4 HOH A 50 650 201 HOH HOH . H 4 HOH A 51 651 94 HOH HOH . H 4 HOH A 52 652 234 HOH HOH . H 4 HOH A 53 653 80 HOH HOH . H 4 HOH A 54 654 206 HOH HOH . H 4 HOH A 55 655 59 HOH HOH . H 4 HOH A 56 656 51 HOH HOH . H 4 HOH A 57 657 19 HOH HOH . H 4 HOH A 58 658 209 HOH HOH . H 4 HOH A 59 659 46 HOH HOH . H 4 HOH A 60 660 182 HOH HOH . H 4 HOH A 61 661 129 HOH HOH . H 4 HOH A 62 662 187 HOH HOH . H 4 HOH A 63 663 128 HOH HOH . H 4 HOH A 64 664 162 HOH HOH . H 4 HOH A 65 665 18 HOH HOH . H 4 HOH A 66 666 146 HOH HOH . H 4 HOH A 67 667 50 HOH HOH . H 4 HOH A 68 668 31 HOH HOH . H 4 HOH A 69 669 207 HOH HOH . H 4 HOH A 70 670 20 HOH HOH . H 4 HOH A 71 671 47 HOH HOH . H 4 HOH A 72 672 249 HOH HOH . H 4 HOH A 73 673 181 HOH HOH . H 4 HOH A 74 674 111 HOH HOH . H 4 HOH A 75 675 95 HOH HOH . H 4 HOH A 76 676 108 HOH HOH . H 4 HOH A 77 677 112 HOH HOH . H 4 HOH A 78 678 167 HOH HOH . H 4 HOH A 79 679 246 HOH HOH . H 4 HOH A 80 680 171 HOH HOH . H 4 HOH A 81 681 88 HOH HOH . H 4 HOH A 82 682 125 HOH HOH . H 4 HOH A 83 683 8 HOH HOH . H 4 HOH A 84 684 67 HOH HOH . H 4 HOH A 85 685 26 HOH HOH . H 4 HOH A 86 686 147 HOH HOH . H 4 HOH A 87 687 214 HOH HOH . H 4 HOH A 88 688 10 HOH HOH . H 4 HOH A 89 689 54 HOH HOH . H 4 HOH A 90 690 62 HOH HOH . H 4 HOH A 91 691 213 HOH HOH . H 4 HOH A 92 692 266 HOH HOH . H 4 HOH A 93 693 61 HOH HOH . H 4 HOH A 94 694 237 HOH HOH . H 4 HOH A 95 695 175 HOH HOH . H 4 HOH A 96 696 210 HOH HOH . H 4 HOH A 97 697 170 HOH HOH . H 4 HOH A 98 698 265 HOH HOH . H 4 HOH A 99 699 253 HOH HOH . H 4 HOH A 100 700 77 HOH HOH . H 4 HOH A 101 701 100 HOH HOH . H 4 HOH A 102 702 195 HOH HOH . H 4 HOH A 103 703 263 HOH HOH . H 4 HOH A 104 704 144 HOH HOH . H 4 HOH A 105 705 37 HOH HOH . H 4 HOH A 106 706 254 HOH HOH . H 4 HOH A 107 707 154 HOH HOH . H 4 HOH A 108 708 184 HOH HOH . H 4 HOH A 109 709 139 HOH HOH . H 4 HOH A 110 710 44 HOH HOH . H 4 HOH A 111 711 119 HOH HOH . H 4 HOH A 112 712 196 HOH HOH . H 4 HOH A 113 713 106 HOH HOH . H 4 HOH A 114 714 150 HOH HOH . H 4 HOH A 115 715 124 HOH HOH . H 4 HOH A 116 716 68 HOH HOH . H 4 HOH A 117 717 235 HOH HOH . H 4 HOH A 118 718 93 HOH HOH . H 4 HOH A 119 719 102 HOH HOH . H 4 HOH A 120 720 212 HOH HOH . H 4 HOH A 121 721 200 HOH HOH . H 4 HOH A 122 722 223 HOH HOH . H 4 HOH A 123 723 248 HOH HOH . H 4 HOH A 124 724 189 HOH HOH . H 4 HOH A 125 725 267 HOH HOH . H 4 HOH A 126 726 53 HOH HOH . H 4 HOH A 127 727 177 HOH HOH . H 4 HOH A 128 728 180 HOH HOH . H 4 HOH A 129 729 264 HOH HOH . H 4 HOH A 130 730 240 HOH HOH . H 4 HOH A 131 731 130 HOH HOH . H 4 HOH A 132 732 274 HOH HOH . H 4 HOH A 133 733 260 HOH HOH . I 4 HOH B 1 601 60 HOH HOH . I 4 HOH B 2 602 172 HOH HOH . I 4 HOH B 3 603 275 HOH HOH . I 4 HOH B 4 604 161 HOH HOH . I 4 HOH B 5 605 73 HOH HOH . I 4 HOH B 6 606 239 HOH HOH . I 4 HOH B 7 607 238 HOH HOH . I 4 HOH B 8 608 232 HOH HOH . I 4 HOH B 9 609 153 HOH HOH . I 4 HOH B 10 610 152 HOH HOH . I 4 HOH B 11 611 163 HOH HOH . I 4 HOH B 12 612 91 HOH HOH . I 4 HOH B 13 613 269 HOH HOH . I 4 HOH B 14 614 198 HOH HOH . I 4 HOH B 15 615 183 HOH HOH . I 4 HOH B 16 616 143 HOH HOH . I 4 HOH B 17 617 205 HOH HOH . I 4 HOH B 18 618 84 HOH HOH . I 4 HOH B 19 619 193 HOH HOH . I 4 HOH B 20 620 105 HOH HOH . I 4 HOH B 21 621 64 HOH HOH . I 4 HOH B 22 622 23 HOH HOH . I 4 HOH B 23 623 224 HOH HOH . I 4 HOH B 24 624 164 HOH HOH . I 4 HOH B 25 625 65 HOH HOH . I 4 HOH B 26 626 22 HOH HOH . I 4 HOH B 27 627 35 HOH HOH . I 4 HOH B 28 628 261 HOH HOH . I 4 HOH B 29 629 155 HOH HOH . I 4 HOH B 30 630 45 HOH HOH . I 4 HOH B 31 631 133 HOH HOH . I 4 HOH B 32 632 166 HOH HOH . I 4 HOH B 33 633 225 HOH HOH . I 4 HOH B 34 634 41 HOH HOH . I 4 HOH B 35 635 252 HOH HOH . I 4 HOH B 36 636 149 HOH HOH . I 4 HOH B 37 637 131 HOH HOH . I 4 HOH B 38 638 9 HOH HOH . I 4 HOH B 39 639 66 HOH HOH . I 4 HOH B 40 640 271 HOH HOH . I 4 HOH B 41 641 148 HOH HOH . I 4 HOH B 42 642 226 HOH HOH . I 4 HOH B 43 643 25 HOH HOH . I 4 HOH B 44 644 142 HOH HOH . I 4 HOH B 45 645 122 HOH HOH . I 4 HOH B 46 646 6 HOH HOH . I 4 HOH B 47 647 14 HOH HOH . I 4 HOH B 48 648 3 HOH HOH . I 4 HOH B 49 649 159 HOH HOH . I 4 HOH B 50 650 123 HOH HOH . I 4 HOH B 51 651 251 HOH HOH . I 4 HOH B 52 652 42 HOH HOH . I 4 HOH B 53 653 16 HOH HOH . I 4 HOH B 54 654 157 HOH HOH . I 4 HOH B 55 655 72 HOH HOH . I 4 HOH B 56 656 33 HOH HOH . I 4 HOH B 57 657 138 HOH HOH . I 4 HOH B 58 658 117 HOH HOH . I 4 HOH B 59 659 242 HOH HOH . I 4 HOH B 60 660 258 HOH HOH . I 4 HOH B 61 661 32 HOH HOH . I 4 HOH B 62 662 132 HOH HOH . I 4 HOH B 63 663 86 HOH HOH . I 4 HOH B 64 664 211 HOH HOH . I 4 HOH B 65 665 107 HOH HOH . I 4 HOH B 66 666 217 HOH HOH . I 4 HOH B 67 667 89 HOH HOH . I 4 HOH B 68 668 17 HOH HOH . I 4 HOH B 69 669 83 HOH HOH . I 4 HOH B 70 670 27 HOH HOH . I 4 HOH B 71 671 76 HOH HOH . I 4 HOH B 72 672 87 HOH HOH . I 4 HOH B 73 673 70 HOH HOH . I 4 HOH B 74 674 30 HOH HOH . I 4 HOH B 75 675 48 HOH HOH . I 4 HOH B 76 676 40 HOH HOH . I 4 HOH B 77 677 121 HOH HOH . I 4 HOH B 78 678 136 HOH HOH . I 4 HOH B 79 679 178 HOH HOH . I 4 HOH B 80 680 227 HOH HOH . I 4 HOH B 81 681 38 HOH HOH . I 4 HOH B 82 682 92 HOH HOH . I 4 HOH B 83 683 244 HOH HOH . I 4 HOH B 84 684 145 HOH HOH . I 4 HOH B 85 685 191 HOH HOH . I 4 HOH B 86 686 29 HOH HOH . I 4 HOH B 87 687 7 HOH HOH . I 4 HOH B 88 688 255 HOH HOH . I 4 HOH B 89 689 115 HOH HOH . I 4 HOH B 90 690 268 HOH HOH . I 4 HOH B 91 691 101 HOH HOH . I 4 HOH B 92 692 110 HOH HOH . I 4 HOH B 93 693 231 HOH HOH . I 4 HOH B 94 694 192 HOH HOH . I 4 HOH B 95 695 259 HOH HOH . I 4 HOH B 96 696 82 HOH HOH . I 4 HOH B 97 697 39 HOH HOH . I 4 HOH B 98 698 43 HOH HOH . I 4 HOH B 99 699 174 HOH HOH . I 4 HOH B 100 700 221 HOH HOH . I 4 HOH B 101 701 126 HOH HOH . I 4 HOH B 102 702 199 HOH HOH . I 4 HOH B 103 703 243 HOH HOH . I 4 HOH B 104 704 63 HOH HOH . I 4 HOH B 105 705 103 HOH HOH . I 4 HOH B 106 706 233 HOH HOH . I 4 HOH B 107 707 273 HOH HOH . I 4 HOH B 108 708 250 HOH HOH . I 4 HOH B 109 709 156 HOH HOH . I 4 HOH B 110 710 34 HOH HOH . I 4 HOH B 111 711 69 HOH HOH . I 4 HOH B 112 712 256 HOH HOH . I 4 HOH B 113 713 158 HOH HOH . I 4 HOH B 114 714 276 HOH HOH . I 4 HOH B 115 715 262 HOH HOH . I 4 HOH B 116 716 118 HOH HOH . I 4 HOH B 117 717 81 HOH HOH . I 4 HOH B 118 718 272 HOH HOH . I 4 HOH B 119 719 202 HOH HOH . I 4 HOH B 120 720 78 HOH HOH . I 4 HOH B 121 721 218 HOH HOH . I 4 HOH B 122 722 222 HOH HOH . I 4 HOH B 123 723 99 HOH HOH . I 4 HOH B 124 724 116 HOH HOH . I 4 HOH B 125 725 190 HOH HOH . I 4 HOH B 126 726 127 HOH HOH . I 4 HOH B 127 727 57 HOH HOH . I 4 HOH B 128 728 219 HOH HOH . I 4 HOH B 129 729 220 HOH HOH . I 4 HOH B 130 730 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 23.254 13.203 28.575 1 40.49 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . C 2 23.24 12.177 27.619 1 33.83 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . C 2 21.827 13.502 29.045 1 38.87 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . C 2 21.391 12.462 29.879 1 43.05 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . C 2 20.87 13.638 27.856 1 39.31 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . C 2 20.797 14.98 27.446 1 31.63 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . C 2 23.791 12.928 29.333 1 48.62 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . C 2 23.637 14.003 28.182 1 48.62 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . C 2 23.692 12.417 26.94 1 40.63 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . C 2 21.827 14.331 29.548 1 46.68 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . C 2 21.575 12.651 30.687 1 51.7 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . C 2 21.193 13.095 27.12 1 47.21 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . C 2 19.987 13.333 28.117 1 47.21 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . C 2 21.567 15.244 27.2 1 37.99 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #