data_6LXA # _model_server_result.job_id L-WeRRmmdtiJcGoERppZDw _model_server_result.datetime_utc '2024-10-30 22:17:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6LXA # _exptl.entry_id 6LXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.5 _cell.angle_gamma 90 _cell.entry_id 6LXA _cell.length_a 44.842 _cell.length_b 61.528 _cell.length_c 52.938 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 180 n n C1 C2 GOL sing 181 n n C1 H11 GOL sing 182 n n C1 H12 GOL sing 183 n n O1 HO1 GOL sing 184 n n C2 O2 GOL sing 185 n n C2 C3 GOL sing 186 n n C2 H2 GOL sing 187 n n O2 HO2 GOL sing 188 n n C3 O3 GOL sing 189 n n C3 H31 GOL sing 190 n n C3 H32 GOL sing 191 n n O3 HO3 GOL sing 192 n n # _atom_sites.entry_id 6LXA _atom_sites.fract_transf_matrix[1][1] 0.022301 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006605 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 EPA A 1 502 1 EPA EPA . D 4 HOH A 1 601 143 HOH HOH . D 4 HOH A 2 602 162 HOH HOH . D 4 HOH A 3 603 183 HOH HOH . D 4 HOH A 4 604 84 HOH HOH . D 4 HOH A 5 605 113 HOH HOH . D 4 HOH A 6 606 168 HOH HOH . D 4 HOH A 7 607 109 HOH HOH . D 4 HOH A 8 608 170 HOH HOH . D 4 HOH A 9 609 179 HOH HOH . D 4 HOH A 10 610 38 HOH HOH . D 4 HOH A 11 611 129 HOH HOH . D 4 HOH A 12 612 202 HOH HOH . D 4 HOH A 13 613 64 HOH HOH . D 4 HOH A 14 614 120 HOH HOH . D 4 HOH A 15 615 34 HOH HOH . D 4 HOH A 16 616 160 HOH HOH . D 4 HOH A 17 617 166 HOH HOH . D 4 HOH A 18 618 136 HOH HOH . D 4 HOH A 19 619 88 HOH HOH . D 4 HOH A 20 620 134 HOH HOH . D 4 HOH A 21 621 89 HOH HOH . D 4 HOH A 22 622 194 HOH HOH . D 4 HOH A 23 623 139 HOH HOH . D 4 HOH A 24 624 63 HOH HOH . D 4 HOH A 25 625 204 HOH HOH . D 4 HOH A 26 626 54 HOH HOH . D 4 HOH A 27 627 142 HOH HOH . D 4 HOH A 28 628 135 HOH HOH . D 4 HOH A 29 629 144 HOH HOH . D 4 HOH A 30 630 107 HOH HOH . D 4 HOH A 31 631 110 HOH HOH . D 4 HOH A 32 632 13 HOH HOH . D 4 HOH A 33 633 133 HOH HOH . D 4 HOH A 34 634 151 HOH HOH . D 4 HOH A 35 635 131 HOH HOH . D 4 HOH A 36 636 114 HOH HOH . D 4 HOH A 37 637 37 HOH HOH . D 4 HOH A 38 638 43 HOH HOH . D 4 HOH A 39 639 1 HOH HOH . D 4 HOH A 40 640 199 HOH HOH . D 4 HOH A 41 641 150 HOH HOH . D 4 HOH A 42 642 32 HOH HOH . D 4 HOH A 43 643 163 HOH HOH . D 4 HOH A 44 644 130 HOH HOH . D 4 HOH A 45 645 165 HOH HOH . D 4 HOH A 46 646 185 HOH HOH . D 4 HOH A 47 647 4 HOH HOH . D 4 HOH A 48 648 95 HOH HOH . D 4 HOH A 49 649 69 HOH HOH . D 4 HOH A 50 650 104 HOH HOH . D 4 HOH A 51 651 181 HOH HOH . D 4 HOH A 52 652 154 HOH HOH . D 4 HOH A 53 653 61 HOH HOH . D 4 HOH A 54 654 83 HOH HOH . D 4 HOH A 55 655 73 HOH HOH . D 4 HOH A 56 656 176 HOH HOH . D 4 HOH A 57 657 6 HOH HOH . D 4 HOH A 58 658 41 HOH HOH . D 4 HOH A 59 659 23 HOH HOH . D 4 HOH A 60 660 205 HOH HOH . D 4 HOH A 61 661 60 HOH HOH . D 4 HOH A 62 662 48 HOH HOH . D 4 HOH A 63 663 57 HOH HOH . D 4 HOH A 64 664 49 HOH HOH . D 4 HOH A 65 665 124 HOH HOH . D 4 HOH A 66 666 126 HOH HOH . D 4 HOH A 67 667 180 HOH HOH . D 4 HOH A 68 668 50 HOH HOH . D 4 HOH A 69 669 11 HOH HOH . D 4 HOH A 70 670 2 HOH HOH . D 4 HOH A 71 671 159 HOH HOH . D 4 HOH A 72 672 78 HOH HOH . D 4 HOH A 73 673 85 HOH HOH . D 4 HOH A 74 674 10 HOH HOH . D 4 HOH A 75 675 25 HOH HOH . D 4 HOH A 76 676 125 HOH HOH . D 4 HOH A 77 677 52 HOH HOH . D 4 HOH A 78 678 79 HOH HOH . D 4 HOH A 79 679 28 HOH HOH . D 4 HOH A 80 680 72 HOH HOH . D 4 HOH A 81 681 111 HOH HOH . D 4 HOH A 82 682 12 HOH HOH . D 4 HOH A 83 683 40 HOH HOH . D 4 HOH A 84 684 30 HOH HOH . D 4 HOH A 85 685 21 HOH HOH . D 4 HOH A 86 686 31 HOH HOH . D 4 HOH A 87 687 7 HOH HOH . D 4 HOH A 88 688 177 HOH HOH . D 4 HOH A 89 689 8 HOH HOH . D 4 HOH A 90 690 26 HOH HOH . D 4 HOH A 91 691 24 HOH HOH . D 4 HOH A 92 692 71 HOH HOH . D 4 HOH A 93 693 76 HOH HOH . D 4 HOH A 94 694 9 HOH HOH . D 4 HOH A 95 695 51 HOH HOH . D 4 HOH A 96 696 149 HOH HOH . D 4 HOH A 97 697 46 HOH HOH . D 4 HOH A 98 698 195 HOH HOH . D 4 HOH A 99 699 14 HOH HOH . D 4 HOH A 100 700 158 HOH HOH . D 4 HOH A 101 701 59 HOH HOH . D 4 HOH A 102 702 207 HOH HOH . D 4 HOH A 103 703 121 HOH HOH . D 4 HOH A 104 704 191 HOH HOH . D 4 HOH A 105 705 102 HOH HOH . D 4 HOH A 106 706 167 HOH HOH . D 4 HOH A 107 707 201 HOH HOH . D 4 HOH A 108 708 86 HOH HOH . D 4 HOH A 109 709 17 HOH HOH . D 4 HOH A 110 710 35 HOH HOH . D 4 HOH A 111 711 5 HOH HOH . D 4 HOH A 112 712 169 HOH HOH . D 4 HOH A 113 713 16 HOH HOH . D 4 HOH A 114 714 97 HOH HOH . D 4 HOH A 115 715 56 HOH HOH . D 4 HOH A 116 716 164 HOH HOH . D 4 HOH A 117 717 3 HOH HOH . D 4 HOH A 118 718 19 HOH HOH . D 4 HOH A 119 719 178 HOH HOH . D 4 HOH A 120 720 80 HOH HOH . D 4 HOH A 121 721 77 HOH HOH . D 4 HOH A 122 722 66 HOH HOH . D 4 HOH A 123 723 174 HOH HOH . D 4 HOH A 124 724 197 HOH HOH . D 4 HOH A 125 725 53 HOH HOH . D 4 HOH A 126 726 147 HOH HOH . D 4 HOH A 127 727 90 HOH HOH . D 4 HOH A 128 728 45 HOH HOH . D 4 HOH A 129 729 15 HOH HOH . D 4 HOH A 130 730 187 HOH HOH . D 4 HOH A 131 731 22 HOH HOH . D 4 HOH A 132 732 101 HOH HOH . D 4 HOH A 133 733 175 HOH HOH . D 4 HOH A 134 734 189 HOH HOH . D 4 HOH A 135 735 67 HOH HOH . D 4 HOH A 136 736 203 HOH HOH . D 4 HOH A 137 737 62 HOH HOH . D 4 HOH A 138 738 47 HOH HOH . D 4 HOH A 139 739 156 HOH HOH . D 4 HOH A 140 740 138 HOH HOH . D 4 HOH A 141 741 20 HOH HOH . D 4 HOH A 142 742 193 HOH HOH . D 4 HOH A 143 743 42 HOH HOH . D 4 HOH A 144 744 182 HOH HOH . D 4 HOH A 145 745 74 HOH HOH . D 4 HOH A 146 746 196 HOH HOH . D 4 HOH A 147 747 100 HOH HOH . D 4 HOH A 148 748 98 HOH HOH . D 4 HOH A 149 749 70 HOH HOH . D 4 HOH A 150 750 103 HOH HOH . D 4 HOH A 151 751 94 HOH HOH . D 4 HOH A 152 752 186 HOH HOH . D 4 HOH A 153 753 29 HOH HOH . D 4 HOH A 154 754 36 HOH HOH . D 4 HOH A 155 755 118 HOH HOH . D 4 HOH A 156 756 122 HOH HOH . D 4 HOH A 157 757 161 HOH HOH . D 4 HOH A 158 758 116 HOH HOH . D 4 HOH A 159 759 171 HOH HOH . D 4 HOH A 160 760 93 HOH HOH . D 4 HOH A 161 761 192 HOH HOH . D 4 HOH A 162 762 145 HOH HOH . D 4 HOH A 163 763 81 HOH HOH . D 4 HOH A 164 764 18 HOH HOH . D 4 HOH A 165 765 123 HOH HOH . D 4 HOH A 166 766 91 HOH HOH . D 4 HOH A 167 767 75 HOH HOH . D 4 HOH A 168 768 39 HOH HOH . D 4 HOH A 169 769 33 HOH HOH . D 4 HOH A 170 770 117 HOH HOH . D 4 HOH A 171 771 92 HOH HOH . D 4 HOH A 172 772 105 HOH HOH . D 4 HOH A 173 773 172 HOH HOH . D 4 HOH A 174 774 119 HOH HOH . D 4 HOH A 175 775 27 HOH HOH . D 4 HOH A 176 776 184 HOH HOH . D 4 HOH A 177 777 137 HOH HOH . D 4 HOH A 178 778 55 HOH HOH . D 4 HOH A 179 779 87 HOH HOH . D 4 HOH A 180 780 58 HOH HOH . D 4 HOH A 181 781 153 HOH HOH . D 4 HOH A 182 782 82 HOH HOH . D 4 HOH A 183 783 106 HOH HOH . D 4 HOH A 184 784 141 HOH HOH . D 4 HOH A 185 785 65 HOH HOH . D 4 HOH A 186 786 190 HOH HOH . D 4 HOH A 187 787 198 HOH HOH . D 4 HOH A 188 788 146 HOH HOH . D 4 HOH A 189 789 99 HOH HOH . D 4 HOH A 190 790 112 HOH HOH . D 4 HOH A 191 791 157 HOH HOH . D 4 HOH A 192 792 108 HOH HOH . D 4 HOH A 193 793 128 HOH HOH . D 4 HOH A 194 794 206 HOH HOH . D 4 HOH A 195 795 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -4.848 0.514 -8.282 1 22.89 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 -4.525 -0.547 -9.132 1 21.13 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 -5.005 -0.007 -6.862 1 18.52 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 -5.386 1.08 -6.042 1 19.77 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 -6.001 -1.175 -6.763 1 25.1 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 -7.277 -0.798 -7.226 1 23.15 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . B 2 -4.139 1.176 -8.308 1 27.46 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . B 2 -5.68 0.919 -8.572 1 27.46 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . B 2 -4.859 -0.406 -9.9 1 25.34 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . B 2 -4.139 -0.324 -6.56 1 22.22 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . B 2 -4.891 1.75 -6.212 1 23.72 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . B 2 -5.675 -1.917 -7.296 1 30.11 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . B 2 -6.069 -1.456 -5.837 1 30.11 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . B 2 -7.234 -0.61 -8.054 1 27.77 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #