data_6LXT # _model_server_result.job_id iym3Hyw-MwoaDn44fwFjUg _model_server_result.datetime_utc '2024-11-08 16:00:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lxt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1301}' # _entry.id 6LXT # _exptl.entry_id 6LXT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.58 _cell.angle_gamma 90 _cell.entry_id 6LXT _cell.length_a 51.24 _cell.length_b 57.58 _cell.length_c 115.72 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LXT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L 1 1 D,E,F,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 89 A ASP 1165 1_555 J ZN ZN . A ZN 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc2 A OE2 GLU 119 A GLU 1195 1_555 L ZN ZN . B ZN 1302 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc3 J ZN ZN . A ZN 1304 1_555 E OD1 ASP 87 E ASP 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc4 J ZN ZN . A ZN 1304 1_555 E OD1 ASP 89 E ASP 1165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc5 B OD1 ASP 27 B ASP 936 1_555 K ZN ZN . B ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc6 F OE1 GLU 9 F GLU 918 1_555 N ZN ZN . F ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc7 F OD1 ASP 41 F ASP 950 1_555 M ZN ZN . F ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 182 n n O1 HO1 PG4 sing 183 n n C1 C2 PG4 sing 184 n n C1 H11 PG4 sing 185 n n C1 H12 PG4 sing 186 n n C2 O2 PG4 sing 187 n n C2 H21 PG4 sing 188 n n C2 H22 PG4 sing 189 n n O2 C3 PG4 sing 190 n n C3 C4 PG4 sing 191 n n C3 H31 PG4 sing 192 n n C3 H32 PG4 sing 193 n n C4 O3 PG4 sing 194 n n C4 H41 PG4 sing 195 n n C4 H42 PG4 sing 196 n n O3 C5 PG4 sing 197 n n C5 C6 PG4 sing 198 n n C5 H51 PG4 sing 199 n n C5 H52 PG4 sing 200 n n C6 O4 PG4 sing 201 n n C6 H61 PG4 sing 202 n n C6 H62 PG4 sing 203 n n O4 C7 PG4 sing 204 n n C7 C8 PG4 sing 205 n n C7 H71 PG4 sing 206 n n C7 H72 PG4 sing 207 n n C8 O5 PG4 sing 208 n n C8 H81 PG4 sing 209 n n C8 H82 PG4 sing 210 n n O5 HO5 PG4 sing 211 n n # _atom_sites.entry_id 6LXT _atom_sites.fract_transf_matrix[1][1] 0.019516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000538 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PG4 A 1 1301 1 PG4 PG4 . H 3 ZN A 1 1302 5 ZN ZN . I 2 PG4 A 1 1303 11 PG4 PG4 . J 3 ZN A 1 1304 3 ZN ZN . K 3 ZN B 1 1301 2 ZN ZN . L 3 ZN B 1 1302 10 ZN ZN . M 3 ZN F 1 1301 6 ZN ZN . N 3 ZN F 1 1302 7 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . G 2 -10.396 -14.398 -34.515 1 84.23 ? O1 PG4 1301 A 1 HETATM 2 C C1 PG4 . . . G 2 -11.717 -14.289 -33.945 1 58.99 ? C1 PG4 1301 A 1 HETATM 3 C C2 PG4 . . . G 2 -11.805 -14.689 -32.465 1 60.86 ? C2 PG4 1301 A 1 HETATM 4 O O2 PG4 . . . G 2 -12.924 -13.984 -31.903 1 84.86 ? O2 PG4 1301 A 1 HETATM 5 C C3 PG4 . . . G 2 -12.929 -13.714 -30.495 1 71.54 ? C3 PG4 1301 A 1 HETATM 6 C C4 PG4 . . . G 2 -13.165 -14.92 -29.57 1 78.18 ? C4 PG4 1301 A 1 HETATM 7 O O3 PG4 . . . G 2 -13.2 -16.246 -30.161 1 70.58 ? O3 PG4 1301 A 1 HETATM 8 C C5 PG4 . . . G 2 -12.765 -17.245 -29.211 1 67.82 ? C5 PG4 1301 A 1 HETATM 9 C C6 PG4 . . . G 2 -13.612 -18.51 -29.186 1 55.96 ? C6 PG4 1301 A 1 HETATM 10 O O4 PG4 . . . G 2 -13.958 -18.802 -27.824 1 79.91 ? O4 PG4 1301 A 1 HETATM 11 C C7 PG4 . . . G 2 -14.931 -17.944 -27.175 1 55.84 ? C7 PG4 1301 A 1 HETATM 12 C C8 PG4 . . . G 2 -15.86 -18.745 -26.236 1 71.4 ? C8 PG4 1301 A 1 HETATM 13 O O5 PG4 . . . G 2 -15.219 -19.095 -24.986 1 54.53 ? O5 PG4 1301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #