data_6LY3 # _model_server_result.job_id 47Bt8wpnIEiKBwv1JZnKDA _model_server_result.datetime_utc '2025-01-11 06:55:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ly3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6LY3 # _exptl.entry_id 6LY3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.276 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 3-(1-benzothiophen-3-yl)-L-alanine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6LY3 _cell.length_a 105.252 _cell.length_b 105.252 _cell.length_c 71.701 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall 'P 64' _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_685 -x+1,-y+3,z -1 0 0 0 -1 0 0 0 1 -52.626 273.452717 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 219 A GLU 396 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc2 A OE2 GLU 219 A GLU 396 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc3 A OG SER 222 A SER 399 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc4 B O2G ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? metalc ? metalc5 B O2B ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc6 B O1B ANP . A ANP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc7 B O2A ANP . A ANP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc8 C MG MG . A MG 502 1_555 F O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc9 C MG MG . A MG 502 1_555 F O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc10 C MG MG . A MG 502 1_555 F O HOH . A HOH 636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc11 C MG MG . A MG 502 1_555 F O HOH . A HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc12 D MG MG . A MG 503 1_555 F O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc13 D MG MG . A MG 503 1_555 F O HOH . A HOH 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? # _chem_comp.formula 'C11 H11 N O2 S' _chem_comp.formula_weight 221.276 _chem_comp.id 4OG _chem_comp.mon_nstd_flag n _chem_comp.name 3-(1-benzothiophen-3-yl)-L-alanine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C7 4OG sing 1 n y C6 C5 4OG doub 2 n y C7 C4 4OG doub 3 n y C5 C8 4OG sing 4 n y C4 S3 4OG sing 5 n y C4 C9 4OG sing 6 n y S3 C2 4OG sing 7 n y C8 C9 4OG doub 8 n y C9 C1 4OG sing 9 n y C2 C1 4OG doub 10 n y C1 CB 4OG sing 11 n n CB CA 4OG sing 12 n n O C 4OG doub 13 n n CA C 4OG sing 14 n n CA N 4OG sing 15 n n C OXT 4OG sing 16 n n C5 H1 4OG sing 17 n n C6 H5 4OG sing 18 n n C7 H3 4OG sing 19 n n C8 H4 4OG sing 20 n n N H 4OG sing 21 n n N H2 4OG sing 22 n n CA HA 4OG sing 23 n n CB H9 4OG sing 24 n n CB H10 4OG sing 25 n n C2 H11 4OG sing 26 n n OXT HXT 4OG sing 27 n n # _atom_sites.entry_id 6LY3 _atom_sites.fract_transf_matrix[1][1] 0.009501 _atom_sites.fract_transf_matrix[1][2] 0.005485 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 1 ANP ANP . C 3 MG A 1 502 1 MG MG . D 3 MG A 1 503 2 MG MG . E 4 4OG A 1 504 1 4OG BTA . F 5 HOH A 1 601 155 HOH HOH . F 5 HOH A 2 602 104 HOH HOH . F 5 HOH A 3 603 114 HOH HOH . F 5 HOH A 4 604 86 HOH HOH . F 5 HOH A 5 605 96 HOH HOH . F 5 HOH A 6 606 20 HOH HOH . F 5 HOH A 7 607 175 HOH HOH . F 5 HOH A 8 608 67 HOH HOH . F 5 HOH A 9 609 165 HOH HOH . F 5 HOH A 10 610 170 HOH HOH . F 5 HOH A 11 611 9 HOH HOH . F 5 HOH A 12 612 61 HOH HOH . F 5 HOH A 13 613 13 HOH HOH . F 5 HOH A 14 614 90 HOH HOH . F 5 HOH A 15 615 91 HOH HOH . F 5 HOH A 16 616 75 HOH HOH . F 5 HOH A 17 617 33 HOH HOH . F 5 HOH A 18 618 1 HOH HOH . F 5 HOH A 19 619 14 HOH HOH . F 5 HOH A 20 620 7 HOH HOH . F 5 HOH A 21 621 43 HOH HOH . F 5 HOH A 22 622 58 HOH HOH . F 5 HOH A 23 623 19 HOH HOH . F 5 HOH A 24 624 8 HOH HOH . F 5 HOH A 25 625 146 HOH HOH . F 5 HOH A 26 626 116 HOH HOH . F 5 HOH A 27 627 87 HOH HOH . F 5 HOH A 28 628 30 HOH HOH . F 5 HOH A 29 629 109 HOH HOH . F 5 HOH A 30 630 60 HOH HOH . F 5 HOH A 31 631 11 HOH HOH . F 5 HOH A 32 632 66 HOH HOH . F 5 HOH A 33 633 24 HOH HOH . F 5 HOH A 34 634 46 HOH HOH . F 5 HOH A 35 635 56 HOH HOH . F 5 HOH A 36 636 68 HOH HOH . F 5 HOH A 37 637 88 HOH HOH . F 5 HOH A 38 638 157 HOH HOH . F 5 HOH A 39 639 2 HOH HOH . F 5 HOH A 40 640 17 HOH HOH . F 5 HOH A 41 641 112 HOH HOH . F 5 HOH A 42 642 64 HOH HOH . F 5 HOH A 43 643 130 HOH HOH . F 5 HOH A 44 644 22 HOH HOH . F 5 HOH A 45 645 101 HOH HOH . F 5 HOH A 46 646 85 HOH HOH . F 5 HOH A 47 647 26 HOH HOH . F 5 HOH A 48 648 182 HOH HOH . F 5 HOH A 49 649 3 HOH HOH . F 5 HOH A 50 650 97 HOH HOH . F 5 HOH A 51 651 16 HOH HOH . F 5 HOH A 52 652 121 HOH HOH . F 5 HOH A 53 653 74 HOH HOH . F 5 HOH A 54 654 69 HOH HOH . F 5 HOH A 55 655 80 HOH HOH . F 5 HOH A 56 656 44 HOH HOH . F 5 HOH A 57 657 63 HOH HOH . F 5 HOH A 58 658 37 HOH HOH . F 5 HOH A 59 659 174 HOH HOH . F 5 HOH A 60 660 102 HOH HOH . F 5 HOH A 61 661 34 HOH HOH . F 5 HOH A 62 662 79 HOH HOH . F 5 HOH A 63 663 72 HOH HOH . F 5 HOH A 64 664 12 HOH HOH . F 5 HOH A 65 665 135 HOH HOH . F 5 HOH A 66 666 150 HOH HOH . F 5 HOH A 67 667 106 HOH HOH . F 5 HOH A 68 668 21 HOH HOH . F 5 HOH A 69 669 156 HOH HOH . F 5 HOH A 70 670 62 HOH HOH . F 5 HOH A 71 671 127 HOH HOH . F 5 HOH A 72 672 134 HOH HOH . F 5 HOH A 73 673 10 HOH HOH . F 5 HOH A 74 674 123 HOH HOH . F 5 HOH A 75 675 93 HOH HOH . F 5 HOH A 76 676 31 HOH HOH . F 5 HOH A 77 677 161 HOH HOH . F 5 HOH A 78 678 32 HOH HOH . F 5 HOH A 79 679 55 HOH HOH . F 5 HOH A 80 680 6 HOH HOH . F 5 HOH A 81 681 126 HOH HOH . F 5 HOH A 82 682 59 HOH HOH . F 5 HOH A 83 683 120 HOH HOH . F 5 HOH A 84 684 119 HOH HOH . F 5 HOH A 85 685 42 HOH HOH . F 5 HOH A 86 686 89 HOH HOH . F 5 HOH A 87 687 181 HOH HOH . F 5 HOH A 88 688 167 HOH HOH . F 5 HOH A 89 689 78 HOH HOH . F 5 HOH A 90 690 82 HOH HOH . F 5 HOH A 91 691 84 HOH HOH . F 5 HOH A 92 692 108 HOH HOH . F 5 HOH A 93 693 27 HOH HOH . F 5 HOH A 94 694 50 HOH HOH . F 5 HOH A 95 695 125 HOH HOH . F 5 HOH A 96 696 172 HOH HOH . F 5 HOH A 97 697 45 HOH HOH . F 5 HOH A 98 698 15 HOH HOH . F 5 HOH A 99 699 35 HOH HOH . F 5 HOH A 100 700 151 HOH HOH . F 5 HOH A 101 701 4 HOH HOH . F 5 HOH A 102 702 73 HOH HOH . F 5 HOH A 103 703 147 HOH HOH . F 5 HOH A 104 704 115 HOH HOH . F 5 HOH A 105 705 40 HOH HOH . F 5 HOH A 106 706 29 HOH HOH . F 5 HOH A 107 707 113 HOH HOH . F 5 HOH A 108 708 77 HOH HOH . F 5 HOH A 109 709 103 HOH HOH . F 5 HOH A 110 710 148 HOH HOH . F 5 HOH A 111 711 168 HOH HOH . F 5 HOH A 112 712 152 HOH HOH . F 5 HOH A 113 713 39 HOH HOH . F 5 HOH A 114 714 48 HOH HOH . F 5 HOH A 115 715 110 HOH HOH . F 5 HOH A 116 716 25 HOH HOH . F 5 HOH A 117 717 180 HOH HOH . F 5 HOH A 118 718 41 HOH HOH . F 5 HOH A 119 719 18 HOH HOH . F 5 HOH A 120 720 71 HOH HOH . F 5 HOH A 121 721 142 HOH HOH . F 5 HOH A 122 722 118 HOH HOH . F 5 HOH A 123 723 38 HOH HOH . F 5 HOH A 124 724 36 HOH HOH . F 5 HOH A 125 725 105 HOH HOH . F 5 HOH A 126 726 95 HOH HOH . F 5 HOH A 127 727 23 HOH HOH . F 5 HOH A 128 728 81 HOH HOH . F 5 HOH A 129 729 57 HOH HOH . F 5 HOH A 130 730 171 HOH HOH . F 5 HOH A 131 731 179 HOH HOH . F 5 HOH A 132 732 176 HOH HOH . F 5 HOH A 133 733 132 HOH HOH . F 5 HOH A 134 734 145 HOH HOH . F 5 HOH A 135 735 139 HOH HOH . F 5 HOH A 136 736 178 HOH HOH . F 5 HOH A 137 737 153 HOH HOH . F 5 HOH A 138 738 158 HOH HOH . F 5 HOH A 139 739 94 HOH HOH . F 5 HOH A 140 740 111 HOH HOH . F 5 HOH A 141 741 28 HOH HOH . F 5 HOH A 142 742 107 HOH HOH . F 5 HOH A 143 743 51 HOH HOH . F 5 HOH A 144 744 136 HOH HOH . F 5 HOH A 145 745 143 HOH HOH . F 5 HOH A 146 746 166 HOH HOH . F 5 HOH A 147 747 149 HOH HOH . F 5 HOH A 148 748 162 HOH HOH . F 5 HOH A 149 749 137 HOH HOH . F 5 HOH A 150 750 173 HOH HOH . F 5 HOH A 151 751 160 HOH HOH . F 5 HOH A 152 752 138 HOH HOH . F 5 HOH A 153 753 65 HOH HOH . F 5 HOH A 154 754 159 HOH HOH . F 5 HOH A 155 755 144 HOH HOH . F 5 HOH A 156 756 49 HOH HOH . F 5 HOH A 157 757 131 HOH HOH . F 5 HOH A 158 758 128 HOH HOH . F 5 HOH A 159 759 163 HOH HOH . F 5 HOH A 160 760 164 HOH HOH . F 5 HOH A 161 761 124 HOH HOH . F 5 HOH A 162 762 53 HOH HOH . F 5 HOH A 163 763 140 HOH HOH . F 5 HOH A 164 764 122 HOH HOH . F 5 HOH A 165 765 52 HOH HOH . F 5 HOH A 166 766 76 HOH HOH . F 5 HOH A 167 767 100 HOH HOH . F 5 HOH A 168 768 47 HOH HOH . F 5 HOH A 169 769 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 4OG . . . E 4 -8.097 135.314 6.765 1 39.13 ? C4 4OG 504 A 1 HETATM 2 C C5 4OG . . . E 4 -5.909 136.96 7.241 1 38.46 ? C5 4OG 504 A 1 HETATM 3 C C6 4OG . . . E 4 -5.753 135.753 6.598 1 36.1 ? C6 4OG 504 A 1 HETATM 4 C C7 4OG . . . E 4 -6.838 134.934 6.359 1 43.79 ? C7 4OG 504 A 1 HETATM 5 C C8 4OG . . . E 4 -7.158 137.342 7.645 1 37.25 ? C8 4OG 504 A 1 HETATM 6 C C9 4OG . . . E 4 -8.251 136.511 7.409 1 38.92 ? C9 4OG 504 A 1 HETATM 7 N N 4OG . . . E 4 -8.703 137.624 10.673 1 31.14 ? N 4OG 504 A 1 HETATM 8 C CA 4OG . . . E 4 -9.976 137.976 10.041 1 33.9 ? CA 4OG 504 A 1 HETATM 9 C CB 4OG . . . E 4 -9.818 138.16 8.527 1 30.76 ? CB 4OG 504 A 1 HETATM 10 C C1 4OG . . . E 4 -9.531 136.83 7.798 1 33.89 ? C1 4OG 504 A 1 HETATM 11 C C2 4OG . . . E 4 -10.494 135.886 7.466 1 35.37 ? C2 4OG 504 A 1 HETATM 12 S S3 4OG . . . E 4 -9.659 134.599 6.662 1 49.53 ? S3 4OG 504 A 1 HETATM 13 C C 4OG . . . E 4 -10.981 136.845 10.253 1 31.96 ? C 4OG 504 A 1 HETATM 14 O O 4OG . . . E 4 -12.161 136.943 9.821 1 31.38 ? O 4OG 504 A 1 HETATM 15 O OXT 4OG . . . E 4 -10.636 135.782 10.834 1 31.64 ? OXT 4OG 504 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #