data_6LY6
#
_model_server_result.job_id            QW3T0hMy4VaKz_GKAJlzTA 
_model_server_result.datetime_utc      '2025-01-11 06:52:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ly6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    6LY6 
#
_exptl.entry_id    6LY6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              215.248 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NAPHTHALEN-2-YL-3-ALANINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6LY6 
_cell.length_a            105.723 
_cell.length_b            105.723 
_cell.length_c            71.597 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LY6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    'P 64' 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -52.8615 91.558804 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 219 A GLU 396 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc2 A OG SER 222 A SER 399 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc3 B O1B ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc4 B O2A ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc5 B O2G ANP . A ANP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? 
metalc ? metalc6 B O2B ANP . A ANP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? 
metalc ? metalc7 D MG MG . A MG 503 1_555 F O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc8 D MG MG . A MG 503 1_555 F O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc9 D MG MG . A MG 503 1_555 F O HOH . A HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc10 D MG MG . A MG 503 1_555 F O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
#
_chem_comp.formula           'C13 H13 N O2' 
_chem_comp.formula_weight    215.248 
_chem_comp.id                ALN 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              NAPHTHALEN-2-YL-3-ALANINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ALN sing 13 n n 
N H ALN sing 14 n n 
N H2 ALN sing 15 n n 
CA C ALN sing 16 n n 
CA CB ALN sing 17 n n 
CA HA ALN sing 18 n n 
C O ALN doub 19 n n 
C OXT ALN sing 20 n n 
CB CG1 ALN sing 21 n n 
CB HB2 ALN sing 22 n n 
CB HB3 ALN sing 23 n n 
CG1 CD1 ALN doub 24 n y 
CG1 CD2 ALN sing 25 n y 
CD1 CE1 ALN sing 26 n y 
CD1 HD1 ALN sing 27 n n 
CE1 CZ1 ALN doub 28 n y 
CE1 HE1 ALN sing 29 n n 
CD2 CE2 ALN doub 30 n y 
CD2 CG2 ALN sing 31 n y 
CE2 CZ1 ALN sing 32 n y 
CE2 CZ2 ALN sing 33 n y 
CZ1 HZ1 ALN sing 34 n n 
CG2 CD3 ALN doub 35 n y 
CG2 HG2 ALN sing 36 n n 
CD3 CE3 ALN sing 37 n y 
CD3 HD3 ALN sing 38 n n 
CE3 CZ2 ALN doub 39 n y 
CE3 HE3 ALN sing 40 n n 
CZ2 HZ2 ALN sing 41 n n 
OXT HXT ALN sing 42 n n 
#
_atom_sites.entry_id                     6LY6 
_atom_sites.fract_transf_matrix[1][1]    0.009459 
_atom_sites.fract_transf_matrix[1][2]    0.005461 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010922 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013967 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ANP A 1 501 1 ANP ANP . 
C 3 MG A 1 502 1 MG MG . 
D 3 MG A 1 503 2 MG MG . 
E 4 ALN A 1 504 1 ALN NAP . 
F 5 HOH A 1 601 67 HOH HOH . 
F 5 HOH A 2 602 55 HOH HOH . 
F 5 HOH A 3 603 13 HOH HOH . 
F 5 HOH A 4 604 9 HOH HOH . 
F 5 HOH A 5 605 1 HOH HOH . 
F 5 HOH A 6 606 24 HOH HOH . 
F 5 HOH A 7 607 75 HOH HOH . 
F 5 HOH A 8 608 73 HOH HOH . 
F 5 HOH A 9 609 14 HOH HOH . 
F 5 HOH A 10 610 8 HOH HOH . 
F 5 HOH A 11 611 48 HOH HOH . 
F 5 HOH A 12 612 47 HOH HOH . 
F 5 HOH A 13 613 11 HOH HOH . 
F 5 HOH A 14 614 7 HOH HOH . 
F 5 HOH A 15 615 74 HOH HOH . 
F 5 HOH A 16 616 63 HOH HOH . 
F 5 HOH A 17 617 16 HOH HOH . 
F 5 HOH A 18 618 10 HOH HOH . 
F 5 HOH A 19 619 4 HOH HOH . 
F 5 HOH A 20 620 6 HOH HOH . 
F 5 HOH A 21 621 20 HOH HOH . 
F 5 HOH A 22 622 19 HOH HOH . 
F 5 HOH A 23 623 77 HOH HOH . 
F 5 HOH A 24 624 57 HOH HOH . 
F 5 HOH A 25 625 2 HOH HOH . 
F 5 HOH A 26 626 35 HOH HOH . 
F 5 HOH A 27 627 18 HOH HOH . 
F 5 HOH A 28 628 22 HOH HOH . 
F 5 HOH A 29 629 32 HOH HOH . 
F 5 HOH A 30 630 15 HOH HOH . 
F 5 HOH A 31 631 3 HOH HOH . 
F 5 HOH A 32 632 17 HOH HOH . 
F 5 HOH A 33 633 68 HOH HOH . 
F 5 HOH A 34 634 26 HOH HOH . 
F 5 HOH A 35 635 56 HOH HOH . 
F 5 HOH A 36 636 21 HOH HOH . 
F 5 HOH A 37 637 65 HOH HOH . 
F 5 HOH A 38 638 27 HOH HOH . 
F 5 HOH A 39 639 12 HOH HOH . 
F 5 HOH A 40 640 70 HOH HOH . 
F 5 HOH A 41 641 50 HOH HOH . 
F 5 HOH A 42 642 23 HOH HOH . 
F 5 HOH A 43 643 37 HOH HOH . 
F 5 HOH A 44 644 44 HOH HOH . 
F 5 HOH A 45 645 31 HOH HOH . 
F 5 HOH A 46 646 34 HOH HOH . 
F 5 HOH A 47 647 41 HOH HOH . 
F 5 HOH A 48 648 36 HOH HOH . 
F 5 HOH A 49 649 38 HOH HOH . 
F 5 HOH A 50 650 69 HOH HOH . 
F 5 HOH A 51 651 46 HOH HOH . 
F 5 HOH A 52 652 64 HOH HOH . 
F 5 HOH A 53 653 39 HOH HOH . 
F 5 HOH A 54 654 29 HOH HOH . 
F 5 HOH A 55 655 49 HOH HOH . 
F 5 HOH A 56 656 53 HOH HOH . 
F 5 HOH A 57 657 43 HOH HOH . 
F 5 HOH A 58 658 52 HOH HOH . 
F 5 HOH A 59 659 25 HOH HOH . 
F 5 HOH A 60 660 28 HOH HOH . 
F 5 HOH A 61 661 59 HOH HOH . 
F 5 HOH A 62 662 72 HOH HOH . 
F 5 HOH A 63 663 58 HOH HOH . 
F 5 HOH A 64 664 71 HOH HOH . 
F 5 HOH A 65 665 54 HOH HOH . 
F 5 HOH A 66 666 60 HOH HOH . 
F 5 HOH A 67 667 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ALN . . . E 4 -34.34 29.89 -3.325 1 58.05 ? N ALN 504 A 1 
HETATM 2 C CA ALN . . . E 4 -33.589 30.94 -3.984 1 46.99 ? CA ALN 504 A 1 
HETATM 3 C C ALN . . . E 4 -34.146 32.266 -3.675 1 58.34 ? C ALN 504 A 1 
HETATM 4 O O ALN . . . E 4 -33.689 33.273 -4.149 1 43.22 ? O ALN 504 A 1 
HETATM 5 C CB ALN . . . E 4 -33.624 30.66 -5.541 1 43.97 ? CB ALN 504 A 1 
HETATM 6 C CG1 ALN . . . E 4 -35.043 30.974 -6.182 1 43.81 ? CG1 ALN 504 A 1 
HETATM 7 C CD1 ALN . . . E 4 -35.432 32.284 -6.556 1 43.84 ? CD1 ALN 504 A 1 
HETATM 8 C CE1 ALN . . . E 4 -36.688 32.493 -7.101 1 45.62 ? CE1 ALN 504 A 1 
HETATM 9 C CD2 ALN . . . E 4 -35.887 29.939 -6.366 1 66.04 ? CD2 ALN 504 A 1 
HETATM 10 C CE2 ALN . . . E 4 -37.165 30.155 -6.924 1 52.91 ? CE2 ALN 504 A 1 
HETATM 11 C CZ1 ALN . . . E 4 -37.551 31.436 -7.286 1 50.84 ? CZ1 ALN 504 A 1 
HETATM 12 C CG2 ALN . . . E 4 -35.473 28.629 -5.987 1 54.06 ? CG2 ALN 504 A 1 
HETATM 13 C CD3 ALN . . . E 4 -36.384 27.508 -6.185 1 48.4 ? CD3 ALN 504 A 1 
HETATM 14 C CE3 ALN . . . E 4 -37.64 27.716 -6.734 1 53.64 ? CE3 ALN 504 A 1 
HETATM 15 C CZ2 ALN . . . E 4 -38.052 29.048 -7.118 1 52.88 ? CZ2 ALN 504 A 1 
HETATM 16 O OXT ALN . . . E 4 -35.151 32.368 -2.897 1 59.54 ? OXT ALN 504 A 1 
HETATM 17 H H2 ALN . . . E 4 -34.682 30.196 -2.588 1 69.09 ? H2 ALN 504 A 1 
HETATM 18 H H ALN . . . E 4 -33.812 29.225 -3.146 1 69.09 ? H ALN 504 A 1 
HETATM 19 H HA ALN . . . E 4 -32.699 30.908 -3.687 1 55.82 ? HA ALN 504 A 1 
HETATM 20 H HB2 ALN . . . E 4 -33.022 31.274 -5.91 1 52.2 ? HB2 ALN 504 A 1 
HETATM 21 H HB3 ALN . . . E 4 -33.303 29.803 -5.735 1 52.2 ? HB3 ALN 504 A 1 
HETATM 22 H HD1 ALN . . . E 4 -34.855 33.001 -6.426 1 52.04 ? HD1 ALN 504 A 1 
HETATM 23 H HE1 ALN . . . E 4 -36.947 33.35 -7.345 1 54.17 ? HE1 ALN 504 A 1 
HETATM 24 H HZ1 ALN . . . E 4 -38.389 31.581 -7.659 1 60.45 ? HZ1 ALN 504 A 1 
HETATM 25 H HG2 ALN . . . E 4 -34.639 28.473 -5.615 1 64.31 ? HG2 ALN 504 A 1 
HETATM 26 H HD3 ALN . . . E 4 -36.121 26.652 -5.939 1 57.51 ? HD3 ALN 504 A 1 
HETATM 27 H HE3 ALN . . . E 4 -38.218 26.999 -6.859 1 63.81 ? HE3 ALN 504 A 1 
HETATM 28 H HZ2 ALN . . . E 4 -38.894 29.186 -7.486 1 62.89 ? HZ2 ALN 504 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           28 
#