data_6LY7 # _model_server_result.job_id aJhAzL_mKb5AydqjPuuMxw _model_server_result.datetime_utc '2025-01-11 07:46:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ly7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6LY7 # _exptl.entry_id 6LY7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 232.235 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N1-FORMYL-TRYPTOPHAN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6LY7 _cell.length_a 105.346 _cell.length_b 105.346 _cell.length_c 72.396 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LY7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall 'P 64' _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_985 -x+4,-y+3,z -1 0 0 0 -1 0 0 0 1 263.365 273.696937 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 219 A GLU 396 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc2 A OE2 GLU 219 A GLU 396 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc3 A OG SER 222 A SER 399 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc4 B O1B ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc5 B O2A ANP . A ANP 501 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc6 B O2G ANP . A ANP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc7 B O2B ANP . A ANP 501 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? metalc ? metalc8 D MG MG . A MG 503 1_555 F O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc9 D MG MG . A MG 503 1_555 F O HOH . A HOH 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc10 D MG MG . A MG 503 1_555 F O HOH . A HOH 674 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc11 D MG MG . A MG 503 1_555 F O HOH . A HOH 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? # _chem_comp.formula 'C12 H12 N2 O3' _chem_comp.formula_weight 232.235 _chem_comp.id TRF _chem_comp.mon_nstd_flag n _chem_comp.name N1-FORMYL-TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRF sing 356 n n N H TRF sing 357 n n N H2 TRF sing 358 n n CA CB TRF sing 359 n n CA C TRF sing 360 n n CA HA TRF sing 361 n n CB CG TRF sing 362 n n CB HB2 TRF sing 363 n n CB HB3 TRF sing 364 n n CG CD1 TRF doub 365 n y CG CD2 TRF sing 366 n y CD1 NE1 TRF sing 367 n y CD1 HD1 TRF sing 368 n n NE1 CE2 TRF sing 369 n y NE1 C1 TRF sing 370 n n CE2 CZ2 TRF doub 371 n y CE2 CD2 TRF sing 372 n y CZ2 CH2 TRF sing 373 n y CZ2 HZ2 TRF sing 374 n n CH2 CZ3 TRF doub 375 n y CH2 HH2 TRF sing 376 n n CZ3 CE3 TRF sing 377 n y CZ3 HZ3 TRF sing 378 n n CE3 CD2 TRF doub 379 n y CE3 HE3 TRF sing 380 n n C O TRF doub 381 n n C OXT TRF sing 382 n n C1 O1 TRF doub 383 n n C1 HC1 TRF sing 384 n n OXT HXT TRF sing 385 n n # _atom_sites.entry_id 6LY7 _atom_sites.fract_transf_matrix[1][1] 0.009493 _atom_sites.fract_transf_matrix[1][2] 0.005481 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010961 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 1 ANP ANP . C 3 MG A 1 502 1 MG MG . D 3 MG A 1 503 2 MG MG . E 4 TRF A 1 504 1 TRF FOW . F 5 HOH A 1 601 115 HOH HOH . F 5 HOH A 2 602 147 HOH HOH . F 5 HOH A 3 603 121 HOH HOH . F 5 HOH A 4 604 125 HOH HOH . F 5 HOH A 5 605 129 HOH HOH . F 5 HOH A 6 606 41 HOH HOH . F 5 HOH A 7 607 56 HOH HOH . F 5 HOH A 8 608 113 HOH HOH . F 5 HOH A 9 609 64 HOH HOH . F 5 HOH A 10 610 172 HOH HOH . F 5 HOH A 11 611 24 HOH HOH . F 5 HOH A 12 612 3 HOH HOH . F 5 HOH A 13 613 15 HOH HOH . F 5 HOH A 14 614 2 HOH HOH . F 5 HOH A 15 615 87 HOH HOH . F 5 HOH A 16 616 134 HOH HOH . F 5 HOH A 17 617 119 HOH HOH . F 5 HOH A 18 618 168 HOH HOH . F 5 HOH A 19 619 42 HOH HOH . F 5 HOH A 20 620 75 HOH HOH . F 5 HOH A 21 621 117 HOH HOH . F 5 HOH A 22 622 123 HOH HOH . F 5 HOH A 23 623 36 HOH HOH . F 5 HOH A 24 624 61 HOH HOH . F 5 HOH A 25 625 49 HOH HOH . F 5 HOH A 26 626 46 HOH HOH . F 5 HOH A 27 627 160 HOH HOH . F 5 HOH A 28 628 143 HOH HOH . F 5 HOH A 29 629 8 HOH HOH . F 5 HOH A 30 630 18 HOH HOH . F 5 HOH A 31 631 69 HOH HOH . F 5 HOH A 32 632 124 HOH HOH . F 5 HOH A 33 633 11 HOH HOH . F 5 HOH A 34 634 17 HOH HOH . F 5 HOH A 35 635 4 HOH HOH . F 5 HOH A 36 636 95 HOH HOH . F 5 HOH A 37 637 5 HOH HOH . F 5 HOH A 38 638 13 HOH HOH . F 5 HOH A 39 639 31 HOH HOH . F 5 HOH A 40 640 92 HOH HOH . F 5 HOH A 41 641 47 HOH HOH . F 5 HOH A 42 642 137 HOH HOH . F 5 HOH A 43 643 52 HOH HOH . F 5 HOH A 44 644 55 HOH HOH . F 5 HOH A 45 645 12 HOH HOH . F 5 HOH A 46 646 94 HOH HOH . F 5 HOH A 47 647 1 HOH HOH . F 5 HOH A 48 648 131 HOH HOH . F 5 HOH A 49 649 140 HOH HOH . F 5 HOH A 50 650 14 HOH HOH . F 5 HOH A 51 651 174 HOH HOH . F 5 HOH A 52 652 116 HOH HOH . F 5 HOH A 53 653 30 HOH HOH . F 5 HOH A 54 654 20 HOH HOH . F 5 HOH A 55 655 144 HOH HOH . F 5 HOH A 56 656 54 HOH HOH . F 5 HOH A 57 657 10 HOH HOH . F 5 HOH A 58 658 65 HOH HOH . F 5 HOH A 59 659 44 HOH HOH . F 5 HOH A 60 660 167 HOH HOH . F 5 HOH A 61 661 32 HOH HOH . F 5 HOH A 62 662 53 HOH HOH . F 5 HOH A 63 663 58 HOH HOH . F 5 HOH A 64 664 43 HOH HOH . F 5 HOH A 65 665 22 HOH HOH . F 5 HOH A 66 666 89 HOH HOH . F 5 HOH A 67 667 27 HOH HOH . F 5 HOH A 68 668 164 HOH HOH . F 5 HOH A 69 669 33 HOH HOH . F 5 HOH A 70 670 25 HOH HOH . F 5 HOH A 71 671 7 HOH HOH . F 5 HOH A 72 672 35 HOH HOH . F 5 HOH A 73 673 149 HOH HOH . F 5 HOH A 74 674 166 HOH HOH . F 5 HOH A 75 675 51 HOH HOH . F 5 HOH A 76 676 70 HOH HOH . F 5 HOH A 77 677 21 HOH HOH . F 5 HOH A 78 678 23 HOH HOH . F 5 HOH A 79 679 152 HOH HOH . F 5 HOH A 80 680 136 HOH HOH . F 5 HOH A 81 681 19 HOH HOH . F 5 HOH A 82 682 6 HOH HOH . F 5 HOH A 83 683 126 HOH HOH . F 5 HOH A 84 684 170 HOH HOH . F 5 HOH A 85 685 38 HOH HOH . F 5 HOH A 86 686 163 HOH HOH . F 5 HOH A 87 687 16 HOH HOH . F 5 HOH A 88 688 40 HOH HOH . F 5 HOH A 89 689 45 HOH HOH . F 5 HOH A 90 690 151 HOH HOH . F 5 HOH A 91 691 34 HOH HOH . F 5 HOH A 92 692 57 HOH HOH . F 5 HOH A 93 693 9 HOH HOH . F 5 HOH A 94 694 37 HOH HOH . F 5 HOH A 95 695 90 HOH HOH . F 5 HOH A 96 696 130 HOH HOH . F 5 HOH A 97 697 165 HOH HOH . F 5 HOH A 98 698 60 HOH HOH . F 5 HOH A 99 699 105 HOH HOH . F 5 HOH A 100 700 88 HOH HOH . F 5 HOH A 101 701 62 HOH HOH . F 5 HOH A 102 702 66 HOH HOH . F 5 HOH A 103 703 85 HOH HOH . F 5 HOH A 104 704 97 HOH HOH . F 5 HOH A 105 705 77 HOH HOH . F 5 HOH A 106 706 26 HOH HOH . F 5 HOH A 107 707 109 HOH HOH . F 5 HOH A 108 708 48 HOH HOH . F 5 HOH A 109 709 122 HOH HOH . F 5 HOH A 110 710 127 HOH HOH . F 5 HOH A 111 711 82 HOH HOH . F 5 HOH A 112 712 154 HOH HOH . F 5 HOH A 113 713 80 HOH HOH . F 5 HOH A 114 714 73 HOH HOH . F 5 HOH A 115 715 63 HOH HOH . F 5 HOH A 116 716 120 HOH HOH . F 5 HOH A 117 717 29 HOH HOH . F 5 HOH A 118 719 101 HOH HOH . F 5 HOH A 119 720 111 HOH HOH . F 5 HOH A 120 721 28 HOH HOH . F 5 HOH A 121 722 138 HOH HOH . F 5 HOH A 122 723 50 HOH HOH . F 5 HOH A 123 724 169 HOH HOH . F 5 HOH A 124 725 91 HOH HOH . F 5 HOH A 125 726 142 HOH HOH . F 5 HOH A 126 727 108 HOH HOH . F 5 HOH A 127 728 139 HOH HOH . F 5 HOH A 128 729 135 HOH HOH . F 5 HOH A 129 730 81 HOH HOH . F 5 HOH A 130 731 84 HOH HOH . F 5 HOH A 131 732 68 HOH HOH . F 5 HOH A 132 733 148 HOH HOH . F 5 HOH A 133 734 114 HOH HOH . F 5 HOH A 134 735 102 HOH HOH . F 5 HOH A 135 736 71 HOH HOH . F 5 HOH A 136 737 78 HOH HOH . F 5 HOH A 137 738 155 HOH HOH . F 5 HOH A 138 739 99 HOH HOH . F 5 HOH A 139 740 59 HOH HOH . F 5 HOH A 140 741 112 HOH HOH . F 5 HOH A 141 742 67 HOH HOH . F 5 HOH A 142 743 171 HOH HOH . F 5 HOH A 143 744 173 HOH HOH . F 5 HOH A 144 745 83 HOH HOH . F 5 HOH A 145 746 159 HOH HOH . F 5 HOH A 146 747 72 HOH HOH . F 5 HOH A 147 748 118 HOH HOH . F 5 HOH A 148 749 39 HOH HOH . F 5 HOH A 149 750 74 HOH HOH . F 5 HOH A 150 751 150 HOH HOH . F 5 HOH A 151 752 110 HOH HOH . F 5 HOH A 152 753 76 HOH HOH . F 5 HOH A 153 754 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRF . . . E 4 113.922 137.722 -12.634 1 45.16 ? N TRF 504 A 1 HETATM 2 C CA TRF . . . E 4 115.201 138.167 -12.101 1 49.79 ? CA TRF 504 A 1 HETATM 3 C CB TRF . . . E 4 115.044 138.547 -10.635 1 41.55 ? CB TRF 504 A 1 HETATM 4 C CG TRF . . . E 4 114.186 137.527 -9.894 1 45.08 ? CG TRF 504 A 1 HETATM 5 C CD1 TRF . . . E 4 112.827 137.66 -9.649 1 45.81 ? CD1 TRF 504 A 1 HETATM 6 N NE1 TRF . . . E 4 112.412 136.589 -8.992 1 49.9 ? NE1 TRF 504 A 1 HETATM 7 C CE2 TRF . . . E 4 113.445 135.732 -8.778 1 45.43 ? CE2 TRF 504 A 1 HETATM 8 C CZ2 TRF . . . E 4 113.539 134.471 -8.134 1 44.49 ? CZ2 TRF 504 A 1 HETATM 9 C CH2 TRF . . . E 4 114.751 133.786 -8.057 1 47.51 ? CH2 TRF 504 A 1 HETATM 10 C CZ3 TRF . . . E 4 115.884 134.364 -8.618 1 45.15 ? CZ3 TRF 504 A 1 HETATM 11 C CE3 TRF . . . E 4 115.804 135.606 -9.254 1 41.75 ? CE3 TRF 504 A 1 HETATM 12 C CD2 TRF . . . E 4 114.579 136.292 -9.336 1 45.85 ? CD2 TRF 504 A 1 HETATM 13 C C TRF . . . E 4 116.187 137.006 -12.183 1 40.82 ? C TRF 504 A 1 HETATM 14 C C1 TRF . . . E 4 111.031 136.399 -8.581 1 47.47 ? C1 TRF 504 A 1 HETATM 15 O O1 TRF . . . E 4 110.595 135.302 -8.545 1 54.44 ? O1 TRF 504 A 1 HETATM 16 O O TRF . . . E 4 115.84 135.907 -12.696 1 41.67 -1 O TRF 504 A 1 HETATM 17 O OXT TRF . . . E 4 117.355 137.107 -11.737 1 40.27 ? OXT TRF 504 A 1 HETATM 18 H H2 TRF . . . E 4 114.053 137.284 -13.372 1 54.19 ? H2 TRF 504 A 1 HETATM 19 H H TRF . . . E 4 113.419 138.411 -12.792 1 54.19 ? H TRF 504 A 1 HETATM 20 H HA TRF . . . E 4 115.521 138.9 -12.594 1 59.75 ? HA TRF 504 A 1 HETATM 21 H HB2 TRF . . . E 4 115.892 138.585 -10.234 1 49.86 ? HB2 TRF 504 A 1 HETATM 22 H HB3 TRF . . . E 4 114.637 139.391 -10.578 1 49.86 ? HB3 TRF 504 A 1 HETATM 23 H HD1 TRF . . . E 4 112.296 138.377 -9.909 1 54.97 ? HD1 TRF 504 A 1 HETATM 24 H HZ2 TRF . . . E 4 112.777 134.092 -7.761 1 53.39 ? HZ2 TRF 504 A 1 HETATM 25 H HH2 TRF . . . E 4 114.802 132.962 -7.631 1 57.01 ? HH2 TRF 504 A 1 HETATM 26 H HZ3 TRF . . . E 4 116.699 133.921 -8.572 1 54.18 ? HZ3 TRF 504 A 1 HETATM 27 H HE3 TRF . . . E 4 116.567 135.981 -9.628 1 50.1 ? HE3 TRF 504 A 1 HETATM 28 H HC1 TRF . . . E 4 110.501 137.127 -8.351 1 56.97 ? HC1 TRF 504 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 28 #