data_6LY8 # _model_server_result.job_id rqoimX9vHfMBqbgadhd0dw _model_server_result.datetime_utc '2024-10-15 11:19:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ly8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":600}' # _entry.id 6LY8 # _exptl.entry_id 6LY8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LY8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id N _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 233 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 233 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id I _struct_conn.ptnr2_label_atom_id O1B _struct_conn.ptnr2_label_comp_id ADP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ADP _struct_conn.ptnr2_auth_seq_id 600 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.298 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LY8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id I _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id ADP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 600 _pdbx_nonpoly_scheme.auth_seq_num 600 _pdbx_nonpoly_scheme.pdb_mon_id ADP _pdbx_nonpoly_scheme.auth_mon_id ADP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . I 5 203.147 199.43 249.734 1 51.83 ? PB ADP 600 A 1 HETATM 2 O O1B ADP . . . I 5 202.554 200.43 248.762 1 51.83 ? O1B ADP 600 A 1 HETATM 3 O O2B ADP . . . I 5 202.809 199.672 251.18 1 51.83 ? O2B ADP 600 A 1 HETATM 4 O O3B ADP . . . I 5 203.004 197.987 249.324 1 51.83 ? O3B ADP 600 A 1 HETATM 5 P PA ADP . . . I 5 205.411 201.085 249.985 1 51.83 ? PA ADP 600 A 1 HETATM 6 O O1A ADP . . . I 5 204.327 202.082 250.284 1 51.83 ? O1A ADP 600 A 1 HETATM 7 O O2A ADP . . . I 5 206.507 200.891 250.999 1 51.83 ? O2A ADP 600 A 1 HETATM 8 O O3A ADP . . . I 5 204.738 199.654 249.7 1 51.83 ? O3A ADP 600 A 1 HETATM 9 O O5' ADP . . . I 5 206.092 201.444 248.578 1 51.83 ? O5' ADP 600 A 1 HETATM 10 C C5' ADP . . . I 5 205.362 201.303 247.368 1 51.83 ? C5' ADP 600 A 1 HETATM 11 C C4' ADP . . . I 5 206.27 201.65 246.199 1 51.83 ? C4' ADP 600 A 1 HETATM 12 O O4' ADP . . . I 5 205.499 202.299 245.195 1 51.83 ? O4' ADP 600 A 1 HETATM 13 C C3' ADP . . . I 5 207.372 202.604 246.611 1 51.83 ? C3' ADP 600 A 1 HETATM 14 O O3' ADP . . . I 5 208.636 201.985 246.371 1 51.83 ? O3' ADP 600 A 1 HETATM 15 C C2' ADP . . . I 5 207.246 203.818 245.724 1 51.83 ? C2' ADP 600 A 1 HETATM 16 O O2' ADP . . . I 5 208.425 203.923 244.926 1 51.83 ? O2' ADP 600 A 1 HETATM 17 C C1' ADP . . . I 5 206.054 203.559 244.827 1 51.83 ? C1' ADP 600 A 1 HETATM 18 N N9 ADP . . . I 5 205.006 204.58 245.052 1 51.83 ? N9 ADP 600 A 1 HETATM 19 C C8 ADP . . . I 5 203.986 204.443 245.915 1 51.83 ? C8 ADP 600 A 1 HETATM 20 N N7 ADP . . . I 5 203.176 205.529 245.905 1 51.83 ? N7 ADP 600 A 1 HETATM 21 C C5 ADP . . . I 5 203.683 206.387 245.008 1 51.83 ? C5 ADP 600 A 1 HETATM 22 C C6 ADP . . . I 5 203.313 207.724 244.511 1 51.83 ? C6 ADP 600 A 1 HETATM 23 N N6 ADP . . . I 5 202.217 208.361 244.989 1 51.83 ? N6 ADP 600 A 1 HETATM 24 N N1 ADP . . . I 5 204.108 208.278 243.574 1 51.83 ? N1 ADP 600 A 1 HETATM 25 C C2 ADP . . . I 5 205.197 207.649 243.101 1 51.83 ? C2 ADP 600 A 1 HETATM 26 N N3 ADP . . . I 5 205.59 206.433 243.509 1 51.83 ? N3 ADP 600 A 1 HETATM 27 C C4 ADP . . . I 5 204.886 205.761 244.445 1 51.83 ? C4 ADP 600 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #