data_6LYF # _model_server_result.job_id 72EHSOF80ZHfQ5sD7MWawQ _model_server_result.datetime_utc '2024-10-18 19:29:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 6LYF # _exptl.entry_id 6LYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.59 _cell.angle_gamma 90 _cell.entry_id 6LYF _cell.length_a 72.2 _cell.length_b 81.88 _cell.length_c 88.657 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 110 1_555 D SG CYS 66 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 B SG CYS 66 B CYS 110 1_555 C SG CYS 66 C CYS 110 1_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? covale ? covale1 A C ALA 107 A ALA 151 1_555 A N MSE 108 A MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 108 A MSE 152 1_555 A N ASP 109 A ASP 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C VAL 201 A VAL 245 1_555 A N MSE 202 A MSE 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 202 A MSE 246 1_555 A N PRO 203 A PRO 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C ALA 107 B ALA 151 1_555 B N MSE 108 B MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 B C MSE 108 B MSE 152 1_555 B N ASP 109 B ASP 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale7 B C VAL 201 B VAL 245 1_555 B N MSE 202 B MSE 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C MSE 202 B MSE 246 1_555 B N PRO 203 B PRO 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 C C ALA 107 C ALA 151 1_555 C N MSE 108 C MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 C C MSE 108 C MSE 152 1_555 C N ASP 109 C ASP 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 C C VAL 201 C VAL 245 1_555 C N MSE 202 C MSE 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 C C MSE 202 C MSE 246 1_555 C N PRO 203 C PRO 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 D C ALA 107 D ALA 151 1_555 D N MSE 108 D MSE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 D C MSE 108 D MSE 152 1_555 D N ASP 109 D ASP 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 D C VAL 201 D VAL 245 1_555 D N MSE 202 D MSE 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 D C MSE 202 D MSE 246 1_555 D N PRO 203 D PRO 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD1 ASN 125 A ASN 169 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc2 E MG MG . A MG 301 1_555 I O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc3 E MG MG . A MG 301 1_555 I O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc4 E MG MG . A MG 301 1_555 I O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc5 E MG MG . A MG 301 1_555 I O HOH . A HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc6 F MG MG . B MG 301 1_555 J O HOH . B HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc7 G MG MG . C MG 301 1_555 K O HOH . C HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc8 G MG MG . C MG 301 1_555 K O HOH . C HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc9 G MG MG . C MG 301 1_555 K O HOH . C HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc10 G MG MG . C MG 301 1_555 K O HOH . C HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc11 D OE1 GLN 120 D GLN 164 1_555 H MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc12 D OD1 ASN 125 D ASN 169 1_555 H MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc13 H MG MG . D MG 301 1_555 L O HOH . D HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LYF _atom_sites.fract_transf_matrix[1][1] 0.01385 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001846 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 301 1280 MG MG . F 2 MG B 1 301 1279 MG MG . G 2 MG C 1 301 1281 MG MG . H 2 MG D 1 301 1282 MG MG . I 3 HOH A 1 401 12 HOH HOH . I 3 HOH A 2 402 15 HOH HOH . I 3 HOH A 3 403 9 HOH HOH . I 3 HOH A 4 404 14 HOH HOH . I 3 HOH A 5 405 6 HOH HOH . I 3 HOH A 6 406 28 HOH HOH . I 3 HOH A 7 407 34 HOH HOH . I 3 HOH A 8 408 16 HOH HOH . I 3 HOH A 9 409 45 HOH HOH . I 3 HOH A 10 410 31 HOH HOH . I 3 HOH A 11 411 5 HOH HOH . I 3 HOH A 12 412 4 HOH HOH . I 3 HOH A 13 413 24 HOH HOH . I 3 HOH A 14 414 25 HOH HOH . I 3 HOH A 15 415 38 HOH HOH . I 3 HOH A 16 416 11 HOH HOH . I 3 HOH A 17 417 22 HOH HOH . I 3 HOH A 18 418 30 HOH HOH . I 3 HOH A 19 419 21 HOH HOH . I 3 HOH A 20 420 3 HOH HOH . I 3 HOH A 21 421 20 HOH HOH . I 3 HOH A 22 422 32 HOH HOH . I 3 HOH A 23 423 36 HOH HOH . I 3 HOH A 24 424 27 HOH HOH . I 3 HOH A 25 425 23 HOH HOH . I 3 HOH A 26 426 17 HOH HOH . I 3 HOH A 27 427 43 HOH HOH . I 3 HOH A 28 428 42 HOH HOH . I 3 HOH A 29 429 10 HOH HOH . I 3 HOH A 30 430 18 HOH HOH . I 3 HOH A 31 431 23 HOH HOH . I 3 HOH A 32 432 8 HOH HOH . I 3 HOH A 33 433 44 HOH HOH . I 3 HOH A 34 434 7 HOH HOH . I 3 HOH A 35 435 37 HOH HOH . I 3 HOH A 36 436 29 HOH HOH . I 3 HOH A 37 437 2 HOH HOH . I 3 HOH A 38 438 19 HOH HOH . I 3 HOH A 39 439 39 HOH HOH . J 3 HOH B 1 401 4 HOH HOH . J 3 HOH B 2 402 18 HOH HOH . J 3 HOH B 3 403 23 HOH HOH . J 3 HOH B 4 404 35 HOH HOH . J 3 HOH B 5 405 19 HOH HOH . J 3 HOH B 6 406 11 HOH HOH . J 3 HOH B 7 407 21 HOH HOH . J 3 HOH B 8 408 29 HOH HOH . J 3 HOH B 9 409 25 HOH HOH . J 3 HOH B 10 410 1 HOH HOH . J 3 HOH B 11 411 8 HOH HOH . J 3 HOH B 12 412 14 HOH HOH . J 3 HOH B 13 413 22 HOH HOH . J 3 HOH B 14 414 28 HOH HOH . J 3 HOH B 15 415 16 HOH HOH . J 3 HOH B 16 416 9 HOH HOH . J 3 HOH B 17 417 3 HOH HOH . J 3 HOH B 18 418 27 HOH HOH . J 3 HOH B 19 419 2 HOH HOH . J 3 HOH B 20 420 40 HOH HOH . J 3 HOH B 21 421 41 HOH HOH . J 3 HOH B 22 422 12 HOH HOH . J 3 HOH B 23 423 24 HOH HOH . J 3 HOH B 24 424 10 HOH HOH . J 3 HOH B 25 425 20 HOH HOH . J 3 HOH B 26 426 13 HOH HOH . J 3 HOH B 27 427 17 HOH HOH . J 3 HOH B 28 428 15 HOH HOH . J 3 HOH B 29 429 7 HOH HOH . J 3 HOH B 30 430 1 HOH HOH . J 3 HOH B 31 431 6 HOH HOH . J 3 HOH B 32 432 26 HOH HOH . J 3 HOH B 33 433 26 HOH HOH . J 3 HOH B 34 434 5 HOH HOH . K 3 HOH C 1 401 42 HOH HOH . K 3 HOH C 2 402 44 HOH HOH . K 3 HOH C 3 403 51 HOH HOH . K 3 HOH C 4 404 5 HOH HOH . K 3 HOH C 5 405 11 HOH HOH . K 3 HOH C 6 406 46 HOH HOH . K 3 HOH C 7 407 26 HOH HOH . K 3 HOH C 8 408 2 HOH HOH . K 3 HOH C 9 409 6 HOH HOH . K 3 HOH C 10 410 13 HOH HOH . K 3 HOH C 11 411 27 HOH HOH . K 3 HOH C 12 412 52 HOH HOH . K 3 HOH C 13 413 12 HOH HOH . K 3 HOH C 14 414 47 HOH HOH . K 3 HOH C 15 415 9 HOH HOH . K 3 HOH C 16 416 14 HOH HOH . K 3 HOH C 17 417 32 HOH HOH . K 3 HOH C 18 418 1 HOH HOH . K 3 HOH C 19 419 31 HOH HOH . K 3 HOH C 20 420 17 HOH HOH . K 3 HOH C 21 421 15 HOH HOH . K 3 HOH C 22 422 24 HOH HOH . K 3 HOH C 23 423 40 HOH HOH . K 3 HOH C 24 424 10 HOH HOH . K 3 HOH C 25 425 19 HOH HOH . K 3 HOH C 26 426 25 HOH HOH . K 3 HOH C 27 427 36 HOH HOH . K 3 HOH C 28 428 16 HOH HOH . K 3 HOH C 29 429 30 HOH HOH . K 3 HOH C 30 430 3 HOH HOH . K 3 HOH C 31 431 55 HOH HOH . K 3 HOH C 32 432 50 HOH HOH . K 3 HOH C 33 433 45 HOH HOH . K 3 HOH C 34 434 41 HOH HOH . K 3 HOH C 35 435 35 HOH HOH . K 3 HOH C 36 436 34 HOH HOH . K 3 HOH C 37 437 43 HOH HOH . K 3 HOH C 38 438 29 HOH HOH . K 3 HOH C 39 439 4 HOH HOH . K 3 HOH C 40 440 48 HOH HOH . K 3 HOH C 41 441 37 HOH HOH . K 3 HOH C 42 442 18 HOH HOH . K 3 HOH C 43 443 4 HOH HOH . K 3 HOH C 44 444 39 HOH HOH . K 3 HOH C 45 445 10 HOH HOH . K 3 HOH C 46 446 53 HOH HOH . K 3 HOH C 47 447 49 HOH HOH . K 3 HOH C 48 448 21 HOH HOH . K 3 HOH C 49 449 2 HOH HOH . K 3 HOH C 50 450 33 HOH HOH . K 3 HOH C 51 451 22 HOH HOH . K 3 HOH C 52 452 23 HOH HOH . K 3 HOH C 53 453 8 HOH HOH . K 3 HOH C 54 454 54 HOH HOH . K 3 HOH C 55 455 8 HOH HOH . K 3 HOH C 56 456 58 HOH HOH . K 3 HOH C 57 457 20 HOH HOH . K 3 HOH C 58 458 38 HOH HOH . K 3 HOH C 59 459 7 HOH HOH . K 3 HOH C 60 460 56 HOH HOH . K 3 HOH C 61 461 28 HOH HOH . L 3 HOH D 1 401 34 HOH HOH . L 3 HOH D 2 402 41 HOH HOH . L 3 HOH D 3 403 32 HOH HOH . L 3 HOH D 4 404 14 HOH HOH . L 3 HOH D 5 405 39 HOH HOH . L 3 HOH D 6 406 38 HOH HOH . L 3 HOH D 7 407 57 HOH HOH . L 3 HOH D 8 408 36 HOH HOH . L 3 HOH D 9 409 43 HOH HOH . L 3 HOH D 10 410 12 HOH HOH . L 3 HOH D 11 411 20 HOH HOH . L 3 HOH D 12 412 13 HOH HOH . L 3 HOH D 13 413 1 HOH HOH . L 3 HOH D 14 414 48 HOH HOH . L 3 HOH D 15 415 17 HOH HOH . L 3 HOH D 16 416 33 HOH HOH . L 3 HOH D 17 417 35 HOH HOH . L 3 HOH D 18 418 11 HOH HOH . L 3 HOH D 19 419 31 HOH HOH . L 3 HOH D 20 420 40 HOH HOH . L 3 HOH D 21 421 30 HOH HOH . L 3 HOH D 22 422 25 HOH HOH . L 3 HOH D 23 423 6 HOH HOH . L 3 HOH D 24 424 18 HOH HOH . L 3 HOH D 25 425 44 HOH HOH . L 3 HOH D 26 426 37 HOH HOH . L 3 HOH D 27 427 29 HOH HOH . L 3 HOH D 28 428 19 HOH HOH . L 3 HOH D 29 429 33 HOH HOH . L 3 HOH D 30 430 16 HOH HOH . L 3 HOH D 31 431 27 HOH HOH . L 3 HOH D 32 432 46 HOH HOH . L 3 HOH D 33 433 5 HOH HOH . L 3 HOH D 34 434 47 HOH HOH . L 3 HOH D 35 435 24 HOH HOH . L 3 HOH D 36 436 26 HOH HOH . L 3 HOH D 37 437 28 HOH HOH . L 3 HOH D 38 438 13 HOH HOH . L 3 HOH D 39 439 42 HOH HOH . L 3 HOH D 40 440 45 HOH HOH . L 3 HOH D 41 441 7 HOH HOH . L 3 HOH D 42 442 3 HOH HOH . L 3 HOH D 43 443 22 HOH HOH . L 3 HOH D 44 444 21 HOH HOH . L 3 HOH D 45 445 9 HOH HOH . L 3 HOH D 46 446 15 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 41.028 _atom_site.Cartn_y -9.053 _atom_site.Cartn_z 75.741 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 58.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #