data_6LYH # _model_server_result.job_id y7TczK0H0NmsyDWHPzO4SQ _model_server_result.datetime_utc '2025-03-19 18:50:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":502}' # _entry.id 6LYH # _exptl.entry_id 6LYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 210.19 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3,7-trimethyl-9H-purine-2,6,8-trione _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.211 _cell.angle_beta 90.039 _cell.angle_gamma 90.172 _cell.entry_id 6LYH _cell.length_a 87.744 _cell.length_b 86.812 _cell.length_c 123.258 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I,J 1 1 C,M,N 1 2 B,D,K,L,O,P 2 1 E,Q,R 3 1 G,U,V 3 3 F,S,T 4 1 H,W,X 4 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_455 x-1,y,z 1 0 0 0 1 0 0 0 1 -87.744 0 0 3 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 87.744 0 0 4 'crystal symmetry operation' 1_565 x,y+1,z 1 0 0 0 1 0 0 0 1 -0.260606 86.811609 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N ? 3 V N N ? 3 X N N # _chem_comp.formula 'C8 H10 N4 O3' _chem_comp.formula_weight 210.19 _chem_comp.id EXU _chem_comp.mon_nstd_flag . _chem_comp.name 1,3,7-trimethyl-9H-purine-2,6,8-trione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAL N7 EXU sing 83 n n N7 C8 EXU sing 84 n n N7 C5 EXU sing 85 n n C8 O8 EXU doub 86 n n C8 N9 EXU sing 87 n n O6 C6 EXU doub 88 n n N9 C4 EXU sing 89 n n C5 C4 EXU doub 90 n n C5 C6 EXU sing 91 n n C4 N3 EXU sing 92 n n C6 N1 EXU sing 93 n n N3 C2 EXU sing 94 n n N3 CAK EXU sing 95 n n N1 CAJ EXU sing 96 n n N1 C2 EXU sing 97 n n C2 O2 EXU doub 98 n n CAK H1 EXU sing 99 n n CAK H2 EXU sing 100 n n CAK H3 EXU sing 101 n n CAJ H4 EXU sing 102 n n CAJ H5 EXU sing 103 n n CAJ H6 EXU sing 104 n n N9 H7 EXU sing 105 n n CAL H8 EXU sing 106 n n CAL H9 EXU sing 107 n n CAL H10 EXU sing 108 n n # _atom_sites.entry_id 6LYH _atom_sites.fract_transf_matrix[1][1] 0.011397 _atom_sites.fract_transf_matrix[1][2] 0.000034 _atom_sites.fract_transf_matrix[1][3] 0.000008 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011519 _atom_sites.fract_transf_matrix[2][3] 0.000042 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 SAH B 1 501 501 SAH SAH . J 3 EXU B 1 502 601 EXU DRG . K 2 SAH A 1 501 501 SAH SAH . L 3 EXU A 1 502 601 EXU DRG . M 2 SAH C 1 501 501 SAH SAH . N 3 EXU C 1 502 601 EXU DRG . O 2 SAH D 1 501 501 SAH SAH . P 3 EXU D 1 502 601 EXU DRG . Q 2 SAH E 1 501 501 SAH SAH . R 3 EXU E 1 502 601 EXU DRG . S 2 SAH F 1 501 501 SAH SAH . T 3 EXU F 1 502 601 EXU DRG . U 2 SAH G 1 501 501 SAH SAH . V 3 EXU G 1 502 601 EXU DRG . W 2 SAH H 1 501 501 SAH SAH . X 3 EXU H 1 502 601 EXU DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 EXU . . . X 3 23.113 -55.237 -60.598 1 61.36 ? C4 EXU 502 H 1 HETATM 2 C C5 EXU . . . X 3 22.04 -54.514 -60.227 1 75.93 ? C5 EXU 502 H 1 HETATM 3 C C6 EXU . . . X 3 22.034 -53.121 -60.593 1 78.58 ? C6 EXU 502 H 1 HETATM 4 C C8 EXU . . . X 3 21.684 -56.64 -59.559 1 58.15 ? C8 EXU 502 H 1 HETATM 5 N N1 EXU . . . X 3 23.249 -52.482 -60.847 1 85.36 ? N1 EXU 502 H 1 HETATM 6 N N3 EXU . . . X 3 24.243 -54.609 -61.126 1 64.87 ? N3 EXU 502 H 1 HETATM 7 C CAK EXU . . . X 3 25.171 -55.389 -61.872 1 64.26 ? CAK EXU 502 H 1 HETATM 8 C C2 EXU . . . X 3 24.379 -53.226 -61.145 1 83.83 ? C2 EXU 502 H 1 HETATM 9 O O2 EXU . . . X 3 25.324 -52.707 -61.707 1 96.79 ? O2 EXU 502 H 1 HETATM 10 C CAJ EXU . . . X 3 23.243 -51.087 -61.136 1 95.38 ? CAJ EXU 502 H 1 HETATM 11 O O6 EXU . . . X 3 21.027 -52.428 -60.385 1 63.43 ? O6 EXU 502 H 1 HETATM 12 N N9 EXU . . . X 3 22.845 -56.573 -60.309 1 55.07 ? N9 EXU 502 H 1 HETATM 13 O O8 EXU . . . X 3 21.042 -57.674 -59.359 1 52.13 ? O8 EXU 502 H 1 HETATM 14 N N7 EXU . . . X 3 21.152 -55.355 -59.549 1 67.31 ? N7 EXU 502 H 1 HETATM 15 C CAL EXU . . . X 3 20.044 -54.948 -58.744 1 58.39 ? CAL EXU 502 H 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #