data_6LYY # _model_server_result.job_id obpVHeP6xlGXtV59gu_9xw _model_server_result.datetime_utc '2025-02-18 17:00:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6LYY # _exptl.entry_id 6LYY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 515.506 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 3-methyl-5-[[(4~{R})-4-methyl-4-oxidanyl-1,2-oxazolidin-2-yl]carbonyl]-6-[[5-methyl-3-(trifluoromethyl)-1~{H}-pyrazol-4-yl]methyl]-1-propan-2-yl-thieno[2,3-d]pyrimidine-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LYY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H24 F3 N5 O5 S' _chem_comp.formula_weight 515.506 _chem_comp.id EY0 _chem_comp.mon_nstd_flag . _chem_comp.name 3-methyl-5-[[(4~{R})-4-methyl-4-oxidanyl-1,2-oxazolidin-2-yl]carbonyl]-6-[[5-methyl-3-(trifluoromethyl)-1~{H}-pyrazol-4-yl]methyl]-1-propan-2-yl-thieno[2,3-d]pyrimidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F23 C22 EY0 sing 83 n n F24 C22 EY0 sing 84 n n C22 F25 EY0 sing 85 n n C22 C21 EY0 sing 86 n n N20 C21 EY0 doub 87 n y N20 N19 EY0 sing 88 n y C21 C17 EY0 sing 89 n y N19 C18 EY0 sing 90 n y C17 C16 EY0 sing 91 n n C17 C18 EY0 doub 92 n y C16 C8 EY0 sing 93 n n C35 C31 EY0 sing 94 n n C18 C26 EY0 sing 95 n n C13 C12 EY0 sing 96 n n S7 C8 EY0 sing 97 n y S7 C2 EY0 sing 98 n y C8 C9 EY0 doub 99 n y C31 O34 EY0 sing 100 n n C31 C32 EY0 sing 101 n n C31 C30 EY0 sing 102 n n C32 N28 EY0 sing 103 n n C12 C14 EY0 sing 104 n n C12 N1 EY0 sing 105 n n C9 C27 EY0 sing 106 n n C9 C3 EY0 sing 107 n y C2 N1 EY0 sing 108 n n C2 C3 EY0 doub 109 n y N28 C27 EY0 sing 110 n n N28 O29 EY0 sing 111 n n C27 O33 EY0 doub 112 n n C30 O29 EY0 sing 113 n n N1 C6 EY0 sing 114 n n C3 C4 EY0 sing 115 n n C6 O11 EY0 doub 116 n n C6 N5 EY0 sing 117 n n C4 N5 EY0 sing 118 n n C4 O10 EY0 doub 119 n n N5 C15 EY0 sing 120 n n C12 H1 EY0 sing 121 n n C13 H2 EY0 sing 122 n n C13 H3 EY0 sing 123 n n C13 H4 EY0 sing 124 n n C14 H5 EY0 sing 125 n n C14 H6 EY0 sing 126 n n C14 H7 EY0 sing 127 n n C15 H8 EY0 sing 128 n n C15 H9 EY0 sing 129 n n C15 H10 EY0 sing 130 n n C16 H11 EY0 sing 131 n n C16 H12 EY0 sing 132 n n C26 H13 EY0 sing 133 n n C26 H14 EY0 sing 134 n n C26 H15 EY0 sing 135 n n C30 H16 EY0 sing 136 n n C30 H17 EY0 sing 137 n n C32 H18 EY0 sing 138 n n C32 H19 EY0 sing 139 n n C35 H20 EY0 sing 140 n n C35 H21 EY0 sing 141 n n C35 H22 EY0 sing 142 n n N19 H23 EY0 sing 143 n n O34 H24 EY0 sing 144 n n # _atom_sites.entry_id 6LYY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id EY0 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 601 _pdbx_nonpoly_scheme.pdb_mon_id EY0 _pdbx_nonpoly_scheme.auth_mon_id EY0 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 EY0 . . . C 3 107.853 110.433 108.031 1 90.99 ? C2 EY0 601 A 1 HETATM 2 C C3 EY0 . . . C 3 108.175 111.554 108.793 1 90.99 ? C3 EY0 601 A 1 HETATM 3 C C4 EY0 . . . C 3 107.273 111.925 109.837 1 90.99 ? C4 EY0 601 A 1 HETATM 4 C C6 EY0 . . . C 3 105.876 110.111 109.291 1 90.99 ? C6 EY0 601 A 1 HETATM 5 C C12 EY0 . . . C 3 106.386 108.542 107.469 1 90.99 ? C12 EY0 601 A 1 HETATM 6 C C13 EY0 . . . C 3 106.267 108.95 105.994 1 90.99 ? C13 EY0 601 A 1 HETATM 7 C C14 EY0 . . . C 3 107.452 107.466 107.676 1 90.99 ? C14 EY0 601 A 1 HETATM 8 C C15 EY0 . . . C 3 105.236 111.587 111.131 1 90.99 ? C15 EY0 601 A 1 HETATM 9 C C16 EY0 . . . C 3 111.431 112.009 106.648 1 90.99 ? C16 EY0 601 A 1 HETATM 10 C C17 EY0 . . . C 3 112.115 110.775 106.023 1 90.99 ? C17 EY0 601 A 1 HETATM 11 C C18 EY0 . . . C 3 112.378 109.526 106.642 1 90.99 ? C18 EY0 601 A 1 HETATM 12 C C21 EY0 . . . C 3 112.616 110.647 104.704 1 90.99 ? C21 EY0 601 A 1 HETATM 13 C C22 EY0 . . . C 3 112.583 111.714 103.614 1 90.99 ? C22 EY0 601 A 1 HETATM 14 C C26 EY0 . . . C 3 112.035 109.134 108.076 1 90.99 ? C26 EY0 601 A 1 HETATM 15 C C27 EY0 . . . C 3 110.002 113.472 109.095 1 90.99 ? C27 EY0 601 A 1 HETATM 16 C C30 EY0 . . . C 3 109.784 117.066 107.959 1 90.99 ? C30 EY0 601 A 1 HETATM 17 C C31 EY0 . . . C 3 109.696 116.575 106.734 1 90.99 ? C31 EY0 601 A 1 HETATM 18 C C32 EY0 . . . C 3 109.589 115.044 106.914 1 90.99 ? C32 EY0 601 A 1 HETATM 19 C C35 EY0 . . . C 3 110.966 116.931 105.923 1 90.99 ? C35 EY0 601 A 1 HETATM 20 C C8 EY0 . . . C 3 110.091 111.576 107.307 1 90.99 ? C8 EY0 601 A 1 HETATM 21 C C9 EY0 . . . C 3 109.441 112.207 108.39 1 90.99 ? C9 EY0 601 A 1 HETATM 22 F F23 EY0 . . . C 3 113.656 111.553 102.788 1 90.99 ? F23 EY0 601 A 1 HETATM 23 F F24 EY0 . . . C 3 111.436 111.595 102.897 1 90.99 ? F24 EY0 601 A 1 HETATM 24 F F25 EY0 . . . C 3 112.633 112.946 104.187 1 90.99 ? F25 EY0 601 A 1 HETATM 25 N N1 EY0 . . . C 3 106.715 109.732 108.289 1 90.99 ? N1 EY0 601 A 1 HETATM 26 N N19 EY0 . . . C 3 112.972 108.769 105.747 1 90.99 ? N19 EY0 601 A 1 HETATM 27 N N20 EY0 . . . C 3 113.113 109.433 104.6 1 90.99 ? N20 EY0 601 A 1 HETATM 28 N N28 EY0 . . . C 3 110.052 114.765 108.374 1 90.99 ? N28 EY0 601 A 1 HETATM 29 N N5 EY0 . . . C 3 106.163 111.196 110.049 1 90.99 ? N5 EY0 601 A 1 HETATM 30 O O10 EY0 . . . C 3 107.546 113.048 110.64 1 90.99 ? O10 EY0 601 A 1 HETATM 31 O O11 EY0 . . . C 3 104.887 109.486 109.502 1 90.99 ? O11 EY0 601 A 1 HETATM 32 O O29 EY0 . . . C 3 110.503 115.927 108.841 1 90.99 ? O29 EY0 601 A 1 HETATM 33 O O33 EY0 . . . C 3 110.391 113.402 110.21 1 90.99 ? O33 EY0 601 A 1 HETATM 34 O O34 EY0 . . . C 3 108.484 117.095 106.064 1 90.99 ? O34 EY0 601 A 1 HETATM 35 S S7 EY0 . . . C 3 109.12 110.244 106.864 1 90.99 ? S7 EY0 601 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #