data_6LZ3 # _model_server_result.job_id bYs3h9S80p3vPjMwX8aVnQ _model_server_result.datetime_utc '2024-12-14 15:00:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 6LZ3 # _exptl.entry_id 6LZ3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LZ3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O ASP 381 A ASP 381 1_555 E N3 FAD . A FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale2 B O ASP 381 B ASP 381 1_555 F N3 FAD . B FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale3 C O ASP 381 C ASP 381 1_555 G N3 FAD . C FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale4 D O ASP 381 D ASP 381 1_555 H N3 FAD . D FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LZ3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 701 501 FAD FAD . F 2 FAD B 1 701 501 FAD FAD . G 2 FAD C 1 701 501 FAD FAD . H 2 FAD D 1 701 501 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 120.921 108.737 147.352 1 26.05 ? PA FAD 701 A 1 HETATM 2 O O1A FAD . . . E 2 119.593 108.696 146.708 1 26.05 ? O1A FAD 701 A 1 HETATM 3 O O2A FAD . . . E 2 121.92 109.745 146.838 1 26.05 ? O2A FAD 701 A 1 HETATM 4 O O5B FAD . . . E 2 120.81 109.033 148.863 1 26.05 ? O5B FAD 701 A 1 HETATM 5 C C5B FAD . . . E 2 121.774 109.871 149.531 1 26.05 ? C5B FAD 701 A 1 HETATM 6 C C4B FAD . . . E 2 122.267 109.116 150.733 1 26.05 ? C4B FAD 701 A 1 HETATM 7 O O4B FAD . . . E 2 121.148 108.487 151.368 1 26.05 ? O4B FAD 701 A 1 HETATM 8 C C3B FAD . . . E 2 123.235 107.989 150.411 1 26.05 ? C3B FAD 701 A 1 HETATM 9 O O3B FAD . . . E 2 124.551 108.49 150.58 1 26.05 ? O3B FAD 701 A 1 HETATM 10 C C2B FAD . . . E 2 122.936 106.923 151.472 1 26.05 ? C2B FAD 701 A 1 HETATM 11 O O2B FAD . . . E 2 123.919 106.925 152.498 1 26.05 ? O2B FAD 701 A 1 HETATM 12 C C1B FAD . . . E 2 121.566 107.319 152.029 1 26.05 ? C1B FAD 701 A 1 HETATM 13 N N9A FAD . . . E 2 120.524 106.322 151.841 1 26.05 ? N9A FAD 701 A 1 HETATM 14 C C8A FAD . . . E 2 119.493 106.384 150.942 1 26.05 ? C8A FAD 701 A 1 HETATM 15 N N7A FAD . . . E 2 118.684 105.354 150.985 1 26.05 ? N7A FAD 701 A 1 HETATM 16 C C5A FAD . . . E 2 119.213 104.567 151.994 1 26.05 ? C5A FAD 701 A 1 HETATM 17 C C6A FAD . . . E 2 118.818 103.331 152.538 1 26.05 ? C6A FAD 701 A 1 HETATM 18 N N6A FAD . . . E 2 117.75 102.646 152.122 1 26.05 ? N6A FAD 701 A 1 HETATM 19 N N1A FAD . . . E 2 119.568 102.816 153.536 1 26.05 ? N1A FAD 701 A 1 HETATM 20 C C2A FAD . . . E 2 120.637 103.497 153.957 1 26.05 ? C2A FAD 701 A 1 HETATM 21 N N3A FAD . . . E 2 121.108 104.666 153.519 1 26.05 ? N3A FAD 701 A 1 HETATM 22 C C4A FAD . . . E 2 120.344 105.153 152.536 1 26.05 ? C4A FAD 701 A 1 HETATM 23 N N1 FAD . . . E 2 124.35 101.527 151.678 1 26.05 ? N1 FAD 701 A 1 HETATM 24 C C2 FAD . . . E 2 125.688 101.612 151.948 1 26.05 ? C2 FAD 701 A 1 HETATM 25 O O2 FAD . . . E 2 126.214 102.701 152.188 1 26.05 ? O2 FAD 701 A 1 HETATM 26 N N3 FAD . . . E 2 126.473 100.459 151.941 1 26.05 ? N3 FAD 701 A 1 HETATM 27 C C4 FAD . . . E 2 125.995 99.184 151.717 1 26.05 ? C4 FAD 701 A 1 HETATM 28 O O4 FAD . . . E 2 126.73 98.206 151.744 1 26.05 ? O4 FAD 701 A 1 HETATM 29 C C4X FAD . . . E 2 124.583 99.109 151.434 1 26.05 ? C4X FAD 701 A 1 HETATM 30 N N5 FAD . . . E 2 124.088 97.95 151.199 1 26.05 ? N5 FAD 701 A 1 HETATM 31 C C5X FAD . . . E 2 122.747 97.856 150.93 1 26.05 ? C5X FAD 701 A 1 HETATM 32 C C6 FAD . . . E 2 122.214 96.596 150.677 1 26.05 ? C6 FAD 701 A 1 HETATM 33 C C7 FAD . . . E 2 120.865 96.434 150.394 1 26.05 ? C7 FAD 701 A 1 HETATM 34 C C7M FAD . . . E 2 120.327 95.055 150.123 1 26.05 ? C7M FAD 701 A 1 HETATM 35 C C8 FAD . . . E 2 120.025 97.557 150.363 1 26.05 ? C8 FAD 701 A 1 HETATM 36 C C8M FAD . . . E 2 118.558 97.42 150.062 1 26.05 ? C8M FAD 701 A 1 HETATM 37 C C9 FAD . . . E 2 120.554 98.816 150.626 1 26.05 ? C9 FAD 701 A 1 HETATM 38 C C9A FAD . . . E 2 121.907 98.977 150.904 1 26.05 ? C9A FAD 701 A 1 HETATM 39 N N10 FAD . . . E 2 122.494 100.241 151.145 1 26.05 ? N10 FAD 701 A 1 HETATM 40 C C10 FAD . . . E 2 123.837 100.336 151.436 1 26.05 ? C10 FAD 701 A 1 HETATM 41 C C1' FAD . . . E 2 121.68 101.473 151.143 1 26.05 ? C1' FAD 701 A 1 HETATM 42 C C2' FAD . . . E 2 121.446 102.067 149.75 1 26.05 ? C2' FAD 701 A 1 HETATM 43 O O2' FAD . . . E 2 121.678 101.113 148.715 1 26.05 ? O2' FAD 701 A 1 HETATM 44 C C3' FAD . . . E 2 122.356 103.276 149.544 1 26.05 ? C3' FAD 701 A 1 HETATM 45 O O3' FAD . . . E 2 121.575 104.433 149.803 1 26.05 ? O3' FAD 701 A 1 HETATM 46 C C4' FAD . . . E 2 122.917 103.42 148.131 1 26.05 ? C4' FAD 701 A 1 HETATM 47 O O4' FAD . . . E 2 124.291 103.791 148.226 1 26.05 ? O4' FAD 701 A 1 HETATM 48 C C5' FAD . . . E 2 122.176 104.448 147.304 1 26.05 ? C5' FAD 701 A 1 HETATM 49 O O5' FAD . . . E 2 123.127 105.417 146.818 1 26.05 ? O5' FAD 701 A 1 HETATM 50 P P FAD . . . E 2 122.672 106.817 146.264 1 26.05 ? P FAD 701 A 1 HETATM 51 O O1P FAD . . . E 2 123.891 107.738 146.359 1 26.05 ? O1P FAD 701 A 1 HETATM 52 O O2P FAD . . . E 2 122.072 106.707 144.941 1 26.05 ? O2P FAD 701 A 1 HETATM 53 O O3P FAD . . . E 2 121.593 107.303 147.306 1 26.05 ? O3P FAD 701 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #