data_6LZ3 # _model_server_result.job_id jLYrNLDR2lflFgy-58DnRg _model_server_result.datetime_utc '2024-11-08 18:13:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 6LZ3 # _exptl.entry_id 6LZ3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LZ3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O ASP 381 A ASP 381 1_555 E N3 FAD . A FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale2 B O ASP 381 B ASP 381 1_555 F N3 FAD . B FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale3 C O ASP 381 C ASP 381 1_555 G N3 FAD . C FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale4 D O ASP 381 D ASP 381 1_555 H N3 FAD . D FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LZ3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 701 501 FAD FAD . F 2 FAD B 1 701 501 FAD FAD . G 2 FAD C 1 701 501 FAD FAD . H 2 FAD D 1 701 501 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . F 2 133.907 146.116 147.531 1 26.85 ? PA FAD 701 B 1 HETATM 2 O O1A FAD . . . F 2 135.239 146.176 146.897 1 26.85 ? O1A FAD 701 B 1 HETATM 3 O O2A FAD . . . F 2 132.928 145.092 147.012 1 26.85 ? O2A FAD 701 B 1 HETATM 4 O O5B FAD . . . F 2 134.012 145.827 149.043 1 26.85 ? O5B FAD 701 B 1 HETATM 5 C C5B FAD . . . F 2 133.055 144.975 149.707 1 26.85 ? C5B FAD 701 B 1 HETATM 6 C C4B FAD . . . F 2 132.541 145.726 150.903 1 26.85 ? C4B FAD 701 B 1 HETATM 7 O O4B FAD . . . F 2 133.646 146.374 151.544 1 26.85 ? O4B FAD 701 B 1 HETATM 8 C C3B FAD . . . F 2 131.559 146.837 150.57 1 26.85 ? C3B FAD 701 B 1 HETATM 9 O O3B FAD . . . F 2 130.249 146.316 150.731 1 26.85 ? O3B FAD 701 B 1 HETATM 10 C C2B FAD . . . F 2 131.833 147.91 151.63 1 26.85 ? C2B FAD 701 B 1 HETATM 11 O O2B FAD . . . F 2 130.843 147.897 152.649 1 26.85 ? O2B FAD 701 B 1 HETATM 12 C C1B FAD . . . F 2 133.205 147.538 152.199 1 26.85 ? C1B FAD 701 B 1 HETATM 13 N N9A FAD . . . F 2 134.233 148.55 152.015 1 26.85 ? N9A FAD 701 B 1 HETATM 14 C C8A FAD . . . F 2 135.271 148.502 151.125 1 26.85 ? C8A FAD 701 B 1 HETATM 15 N N7A FAD . . . F 2 136.064 149.544 151.17 1 26.85 ? N7A FAD 701 B 1 HETATM 16 C C5A FAD . . . F 2 135.515 150.326 152.173 1 26.85 ? C5A FAD 701 B 1 HETATM 17 C C6A FAD . . . F 2 135.886 151.569 152.716 1 26.85 ? C6A FAD 701 B 1 HETATM 18 N N6A FAD . . . F 2 136.947 152.269 152.306 1 26.85 ? N6A FAD 701 B 1 HETATM 19 N N1A FAD . . . F 2 135.121 152.075 153.707 1 26.85 ? N1A FAD 701 B 1 HETATM 20 C C2A FAD . . . F 2 134.06 151.379 154.122 1 26.85 ? C2A FAD 701 B 1 HETATM 21 N N3A FAD . . . F 2 133.61 150.202 153.684 1 26.85 ? N3A FAD 701 B 1 HETATM 22 C C4A FAD . . . F 2 134.389 149.724 152.708 1 26.85 ? C4A FAD 701 B 1 HETATM 23 N N1 FAD . . . F 2 130.334 153.284 151.809 1 26.85 ? N1 FAD 701 B 1 HETATM 24 C C2 FAD . . . F 2 128.995 153.179 152.07 1 26.85 ? C2 FAD 701 B 1 HETATM 25 O O2 FAD . . . F 2 128.485 152.083 152.309 1 26.85 ? O2 FAD 701 B 1 HETATM 26 N N3 FAD . . . F 2 128.193 154.32 152.053 1 26.85 ? N3 FAD 701 B 1 HETATM 27 C C4 FAD . . . F 2 128.653 155.602 151.829 1 26.85 ? C4 FAD 701 B 1 HETATM 28 O O4 FAD . . . F 2 127.902 156.568 151.847 1 26.85 ? O4 FAD 701 B 1 HETATM 29 C C4X FAD . . . F 2 130.065 155.698 151.556 1 26.85 ? C4X FAD 701 B 1 HETATM 30 N N5 FAD . . . F 2 130.544 156.864 151.322 1 26.85 ? N5 FAD 701 B 1 HETATM 31 C C5X FAD . . . F 2 131.885 156.978 151.062 1 26.85 ? C5X FAD 701 B 1 HETATM 32 C C6 FAD . . . F 2 132.4 158.245 150.809 1 26.85 ? C6 FAD 701 B 1 HETATM 33 C C7 FAD . . . F 2 133.749 158.427 150.536 1 26.85 ? C7 FAD 701 B 1 HETATM 34 C C7M FAD . . . F 2 134.268 159.814 150.265 1 26.85 ? C7M FAD 701 B 1 HETATM 35 C C8 FAD . . . F 2 134.606 157.317 150.515 1 26.85 ? C8 FAD 701 B 1 HETATM 36 C C8M FAD . . . F 2 136.074 157.477 150.224 1 26.85 ? C8M FAD 701 B 1 HETATM 37 C C9 FAD . . . F 2 134.095 156.051 150.778 1 26.85 ? C9 FAD 701 B 1 HETATM 38 C C9A FAD . . . F 2 132.742 155.869 151.046 1 26.85 ? C9A FAD 701 B 1 HETATM 39 N N10 FAD . . . F 2 132.174 154.598 151.286 1 26.85 ? N10 FAD 701 B 1 HETATM 40 C C10 FAD . . . F 2 130.83 154.482 151.567 1 26.85 ? C10 FAD 701 B 1 HETATM 41 C C1' FAD . . . F 2 133.007 153.379 151.294 1 26.85 ? C1' FAD 701 B 1 HETATM 42 C C2' FAD . . . F 2 133.26 152.784 149.905 1 26.85 ? C2' FAD 701 B 1 HETATM 43 O O2' FAD . . . F 2 133.022 153.732 148.865 1 26.85 ? O2' FAD 701 B 1 HETATM 44 C C3' FAD . . . F 2 132.371 151.56 149.695 1 26.85 ? C3' FAD 701 B 1 HETATM 45 O O3' FAD . . . F 2 133.167 150.417 149.964 1 26.85 ? O3' FAD 701 B 1 HETATM 46 C C4' FAD . . . F 2 131.823 151.404 148.279 1 26.85 ? C4' FAD 701 B 1 HETATM 47 O O4' FAD . . . F 2 130.454 151.012 148.364 1 26.85 ? O4' FAD 701 B 1 HETATM 48 C C5' FAD . . . F 2 132.586 150.384 147.461 1 26.85 ? C5' FAD 701 B 1 HETATM 49 O O5' FAD . . . F 2 131.654 149.4 146.97 1 26.85 ? O5' FAD 701 B 1 HETATM 50 P P FAD . . . F 2 132.135 148.005 146.424 1 26.85 ? P FAD 701 B 1 HETATM 51 O O1P FAD . . . F 2 130.93 147.066 146.512 1 26.85 ? O1P FAD 701 B 1 HETATM 52 O O2P FAD . . . F 2 132.743 148.121 145.105 1 26.85 ? O2P FAD 701 B 1 HETATM 53 O O3P FAD . . . F 2 133.213 147.539 147.475 1 26.85 ? O3P FAD 701 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #