data_6LZ3 # _model_server_result.job_id 0PfzAEjtDHrnQEI0pC8DeA _model_server_result.datetime_utc '2024-11-08 18:02:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":701}' # _entry.id 6LZ3 # _exptl.entry_id 6LZ3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LZ3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O ASP 381 A ASP 381 1_555 E N3 FAD . A FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale2 B O ASP 381 B ASP 381 1_555 F N3 FAD . B FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale3 C O ASP 381 C ASP 381 1_555 G N3 FAD . C FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale4 D O ASP 381 D ASP 381 1_555 H N3 FAD . D FAD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LZ3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 701 501 FAD FAD . F 2 FAD B 1 701 501 FAD FAD . G 2 FAD C 1 701 501 FAD FAD . H 2 FAD D 1 701 501 FAD FAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . G 2 120.961 146.005 107.074 1 25.61 ? PA FAD 701 C 1 HETATM 2 O O1A FAD . . . G 2 119.632 146.052 107.715 1 25.61 ? O1A FAD 701 C 1 HETATM 3 O O2A FAD . . . G 2 121.954 144.993 107.591 1 25.61 ? O2A FAD 701 C 1 HETATM 4 O O5B FAD . . . G 2 120.851 145.708 105.563 1 25.61 ? O5B FAD 701 C 1 HETATM 5 C C5B FAD . . . G 2 121.813 144.865 104.898 1 25.61 ? C5B FAD 701 C 1 HETATM 6 C C4B FAD . . . G 2 122.312 145.617 103.696 1 25.61 ? C4B FAD 701 C 1 HETATM 7 O O4B FAD . . . G 2 121.197 146.251 103.059 1 25.61 ? O4B FAD 701 C 1 HETATM 8 C C3B FAD . . . G 2 123.284 146.74 104.02 1 25.61 ? C3B FAD 701 C 1 HETATM 9 O O3B FAD . . . G 2 124.599 146.233 103.853 1 25.61 ? O3B FAD 701 C 1 HETATM 10 C C2B FAD . . . G 2 122.992 147.807 102.957 1 25.61 ? C2B FAD 701 C 1 HETATM 11 O O2B FAD . . . G 2 123.977 147.8 101.933 1 25.61 ? O2B FAD 701 C 1 HETATM 12 C C1B FAD . . . G 2 121.622 147.417 102.398 1 25.61 ? C1B FAD 701 C 1 HETATM 13 N N9A FAD . . . G 2 120.583 148.419 102.584 1 25.61 ? N9A FAD 701 C 1 HETATM 14 C C8A FAD . . . G 2 119.551 148.362 103.48 1 25.61 ? C8A FAD 701 C 1 HETATM 15 N N7A FAD . . . G 2 118.747 149.396 103.435 1 25.61 ? N7A FAD 701 C 1 HETATM 16 C C5A FAD . . . G 2 119.281 150.18 102.427 1 25.61 ? C5A FAD 701 C 1 HETATM 17 C C6A FAD . . . G 2 118.893 151.417 101.881 1 25.61 ? C6A FAD 701 C 1 HETATM 18 N N6A FAD . . . G 2 117.827 152.107 102.294 1 25.61 ? N6A FAD 701 C 1 HETATM 19 N N1A FAD . . . G 2 119.648 151.928 100.884 1 25.61 ? N1A FAD 701 C 1 HETATM 20 C C2A FAD . . . G 2 120.714 151.242 100.466 1 25.61 ? C2A FAD 701 C 1 HETATM 21 N N3A FAD . . . G 2 121.178 150.071 100.905 1 25.61 ? N3A FAD 701 C 1 HETATM 22 C C4A FAD . . . G 2 120.411 149.588 101.887 1 25.61 ? C4A FAD 701 C 1 HETATM 23 N N1 FAD . . . G 2 124.431 153.196 102.751 1 25.61 ? N1 FAD 701 C 1 HETATM 24 C C2 FAD . . . G 2 125.769 153.105 102.483 1 25.61 ? C2 FAD 701 C 1 HETATM 25 O O2 FAD . . . G 2 126.291 152.013 102.245 1 25.61 ? O2 FAD 701 C 1 HETATM 26 N N3 FAD . . . G 2 126.56 154.254 102.491 1 25.61 ? N3 FAD 701 C 1 HETATM 27 C C4 FAD . . . G 2 126.087 155.532 102.713 1 25.61 ? C4 FAD 701 C 1 HETATM 28 O O4 FAD . . . G 2 126.827 156.506 102.688 1 25.61 ? O4 FAD 701 C 1 HETATM 29 C C4X FAD . . . G 2 124.675 155.613 102.994 1 25.61 ? C4X FAD 701 C 1 HETATM 30 N N5 FAD . . . G 2 124.184 156.775 103.227 1 25.61 ? N5 FAD 701 C 1 HETATM 31 C C5X FAD . . . G 2 122.844 156.875 103.494 1 25.61 ? C5X FAD 701 C 1 HETATM 32 C C6 FAD . . . G 2 122.316 158.137 103.745 1 25.61 ? C6 FAD 701 C 1 HETATM 33 C C7 FAD . . . G 2 120.967 158.306 104.025 1 25.61 ? C7 FAD 701 C 1 HETATM 34 C C7M FAD . . . G 2 120.434 159.687 104.294 1 25.61 ? C7M FAD 701 C 1 HETATM 35 C C8 FAD . . . G 2 120.122 157.186 104.055 1 25.61 ? C8 FAD 701 C 1 HETATM 36 C C8M FAD . . . G 2 118.655 157.331 104.353 1 25.61 ? C8M FAD 701 C 1 HETATM 37 C C9 FAD . . . G 2 120.646 155.925 103.794 1 25.61 ? C9 FAD 701 C 1 HETATM 38 C C9A FAD . . . G 2 121.999 155.757 103.518 1 25.61 ? C9A FAD 701 C 1 HETATM 39 N N10 FAD . . . G 2 122.58 154.491 103.279 1 25.61 ? N10 FAD 701 C 1 HETATM 40 C C10 FAD . . . G 2 123.923 154.389 102.991 1 25.61 ? C10 FAD 701 C 1 HETATM 41 C C1' FAD . . . G 2 121.761 153.263 103.28 1 25.61 ? C1' FAD 701 C 1 HETATM 42 C C2' FAD . . . G 2 121.521 152.671 104.673 1 25.61 ? C2' FAD 701 C 1 HETATM 43 O O2' FAD . . . G 2 121.755 153.625 105.708 1 25.61 ? O2' FAD 701 C 1 HETATM 44 C C3' FAD . . . G 2 122.425 151.457 104.882 1 25.61 ? C3' FAD 701 C 1 HETATM 45 O O3' FAD . . . G 2 121.64 150.305 104.622 1 25.61 ? O3' FAD 701 C 1 HETATM 46 C C4' FAD . . . G 2 122.982 151.312 106.296 1 25.61 ? C4' FAD 701 C 1 HETATM 47 O O4' FAD . . . G 2 124.355 150.935 106.204 1 25.61 ? O4' FAD 701 C 1 HETATM 48 C C5' FAD . . . G 2 122.236 150.287 107.122 1 25.61 ? C5' FAD 701 C 1 HETATM 49 O O5' FAD . . . G 2 123.181 149.314 107.611 1 25.61 ? O5' FAD 701 C 1 HETATM 50 P P FAD . . . G 2 122.718 147.917 108.165 1 25.61 ? P FAD 701 C 1 HETATM 51 O O1P FAD . . . G 2 123.933 146.991 108.073 1 25.61 ? O1P FAD 701 C 1 HETATM 52 O O2P FAD . . . G 2 122.117 148.03 109.486 1 25.61 ? O2P FAD 701 C 1 HETATM 53 O O3P FAD . . . G 2 121.639 147.435 107.121 1 25.61 ? O3P FAD 701 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #