data_6LZJ
#
_model_server_result.job_id            RdQAFL8NhEiMvr234cnDLw 
_model_server_result.datetime_utc      '2024-10-19 21:43:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lzj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    6LZJ 
#
_exptl.entry_id    6LZJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         81.11 
_cell.angle_beta          71.598 
_cell.angle_gamma         77.691 
_cell.entry_id            6LZJ 
_cell.length_a            35.016 
_cell.length_b            42.863 
_cell.length_c            53.859 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6LZJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B MG MG . A MG 401 1_555 C O1B ACP . A ACP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc2 B MG MG . A MG 401 1_555 C O1A ACP . A ACP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc3 B MG MG . A MG 401 1_555 C O1G ACP . A ACP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
#
_chem_comp.formula           'C11 H18 N5 O12 P3' 
_chem_comp.formula_weight    505.208 
_chem_comp.id                ACP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ACP doub 1 n n 
PG O2G ACP sing 2 n n 
PG O3G ACP sing 3 n n 
PG C3B ACP sing 4 n n 
O2G HOG2 ACP sing 5 n n 
O3G HOG3 ACP sing 6 n n 
PB O1B ACP doub 7 n n 
PB O2B ACP sing 8 n n 
PB C3B ACP sing 9 n n 
PB O3A ACP sing 10 n n 
O2B HOB2 ACP sing 11 n n 
C3B H3B1 ACP sing 12 n n 
C3B H3B2 ACP sing 13 n n 
PA O1A ACP doub 14 n n 
PA O2A ACP sing 15 n n 
PA O3A ACP sing 16 n n 
PA O5' ACP sing 17 n n 
O2A HOA2 ACP sing 18 n n 
O5' C5' ACP sing 19 n n 
C5' C4' ACP sing 20 n n 
C5' "H5'1" ACP sing 21 n n 
C5' "H5'2" ACP sing 22 n n 
C4' O4' ACP sing 23 n n 
C4' C3' ACP sing 24 n n 
C4' H4' ACP sing 25 n n 
O4' C1' ACP sing 26 n n 
C3' O3' ACP sing 27 n n 
C3' C2' ACP sing 28 n n 
C3' H3' ACP sing 29 n n 
O3' HO3' ACP sing 30 n n 
C2' O2' ACP sing 31 n n 
C2' C1' ACP sing 32 n n 
C2' H2' ACP sing 33 n n 
O2' HO2' ACP sing 34 n n 
C1' N9 ACP sing 35 n n 
C1' H1' ACP sing 36 n n 
N9 C8 ACP sing 37 n y 
N9 C4 ACP sing 38 n y 
C8 N7 ACP doub 39 n y 
C8 H8 ACP sing 40 n n 
N7 C5 ACP sing 41 n y 
C5 C6 ACP sing 42 n y 
C5 C4 ACP doub 43 n y 
C6 N6 ACP sing 44 n n 
C6 N1 ACP doub 45 n y 
N6 HN61 ACP sing 46 n n 
N6 HN62 ACP sing 47 n n 
N1 C2 ACP sing 48 n y 
C2 N3 ACP doub 49 n y 
C2 H2 ACP sing 50 n n 
N3 C4 ACP sing 51 n y 
#
_atom_sites.entry_id                     6LZJ 
_atom_sites.fract_transf_matrix[1][1]    0.028558 
_atom_sites.fract_transf_matrix[1][2]    -0.006231 
_atom_sites.fract_transf_matrix[1][3]    -0.008955 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023879 
_atom_sites.fract_transf_matrix[2][3]    -0.002257 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019655 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 401 1 MG MG . 
C 3 ACP A 1 402 1 ACP ACP . 
D 4 HOH A 1 501 38 HOH HOH . 
D 4 HOH A 2 502 75 HOH HOH . 
D 4 HOH A 3 503 42 HOH HOH . 
D 4 HOH A 4 504 9 HOH HOH . 
D 4 HOH A 5 505 79 HOH HOH . 
D 4 HOH A 6 506 51 HOH HOH . 
D 4 HOH A 7 507 155 HOH HOH . 
D 4 HOH A 8 508 129 HOH HOH . 
D 4 HOH A 9 509 30 HOH HOH . 
D 4 HOH A 10 510 94 HOH HOH . 
D 4 HOH A 11 511 126 HOH HOH . 
D 4 HOH A 12 512 96 HOH HOH . 
D 4 HOH A 13 513 8 HOH HOH . 
D 4 HOH A 14 514 62 HOH HOH . 
D 4 HOH A 15 515 98 HOH HOH . 
D 4 HOH A 16 516 85 HOH HOH . 
D 4 HOH A 17 517 164 HOH HOH . 
D 4 HOH A 18 518 112 HOH HOH . 
D 4 HOH A 19 519 50 HOH HOH . 
D 4 HOH A 20 520 64 HOH HOH . 
D 4 HOH A 21 521 139 HOH HOH . 
D 4 HOH A 22 522 72 HOH HOH . 
D 4 HOH A 23 523 91 HOH HOH . 
D 4 HOH A 24 524 46 HOH HOH . 
D 4 HOH A 25 525 52 HOH HOH . 
D 4 HOH A 26 526 21 HOH HOH . 
D 4 HOH A 27 527 31 HOH HOH . 
D 4 HOH A 28 528 131 HOH HOH . 
D 4 HOH A 29 529 95 HOH HOH . 
D 4 HOH A 30 530 35 HOH HOH . 
D 4 HOH A 31 531 66 HOH HOH . 
D 4 HOH A 32 532 13 HOH HOH . 
D 4 HOH A 33 533 5 HOH HOH . 
D 4 HOH A 34 534 47 HOH HOH . 
D 4 HOH A 35 535 90 HOH HOH . 
D 4 HOH A 36 536 161 HOH HOH . 
D 4 HOH A 37 537 55 HOH HOH . 
D 4 HOH A 38 538 65 HOH HOH . 
D 4 HOH A 39 539 110 HOH HOH . 
D 4 HOH A 40 540 147 HOH HOH . 
D 4 HOH A 41 541 6 HOH HOH . 
D 4 HOH A 42 542 118 HOH HOH . 
D 4 HOH A 43 543 104 HOH HOH . 
D 4 HOH A 44 544 4 HOH HOH . 
D 4 HOH A 45 545 43 HOH HOH . 
D 4 HOH A 46 546 34 HOH HOH . 
D 4 HOH A 47 547 14 HOH HOH . 
D 4 HOH A 48 548 49 HOH HOH . 
D 4 HOH A 49 549 27 HOH HOH . 
D 4 HOH A 50 550 170 HOH HOH . 
D 4 HOH A 51 551 151 HOH HOH . 
D 4 HOH A 52 552 67 HOH HOH . 
D 4 HOH A 53 553 45 HOH HOH . 
D 4 HOH A 54 554 53 HOH HOH . 
D 4 HOH A 55 555 23 HOH HOH . 
D 4 HOH A 56 556 93 HOH HOH . 
D 4 HOH A 57 557 87 HOH HOH . 
D 4 HOH A 58 558 41 HOH HOH . 
D 4 HOH A 59 559 177 HOH HOH . 
D 4 HOH A 60 560 100 HOH HOH . 
D 4 HOH A 61 561 168 HOH HOH . 
D 4 HOH A 62 562 10 HOH HOH . 
D 4 HOH A 63 563 25 HOH HOH . 
D 4 HOH A 64 564 123 HOH HOH . 
D 4 HOH A 65 565 48 HOH HOH . 
D 4 HOH A 66 566 56 HOH HOH . 
D 4 HOH A 67 567 44 HOH HOH . 
D 4 HOH A 68 568 16 HOH HOH . 
D 4 HOH A 69 569 68 HOH HOH . 
D 4 HOH A 70 570 19 HOH HOH . 
D 4 HOH A 71 571 17 HOH HOH . 
D 4 HOH A 72 572 120 HOH HOH . 
D 4 HOH A 73 573 169 HOH HOH . 
D 4 HOH A 74 574 176 HOH HOH . 
D 4 HOH A 75 575 121 HOH HOH . 
D 4 HOH A 76 576 73 HOH HOH . 
D 4 HOH A 77 577 89 HOH HOH . 
D 4 HOH A 78 578 172 HOH HOH . 
D 4 HOH A 79 579 71 HOH HOH . 
D 4 HOH A 80 580 54 HOH HOH . 
D 4 HOH A 81 581 39 HOH HOH . 
D 4 HOH A 82 582 11 HOH HOH . 
D 4 HOH A 83 583 88 HOH HOH . 
D 4 HOH A 84 584 144 HOH HOH . 
D 4 HOH A 85 585 2 HOH HOH . 
D 4 HOH A 86 586 137 HOH HOH . 
D 4 HOH A 87 587 37 HOH HOH . 
D 4 HOH A 88 588 29 HOH HOH . 
D 4 HOH A 89 589 97 HOH HOH . 
D 4 HOH A 90 590 81 HOH HOH . 
D 4 HOH A 91 591 22 HOH HOH . 
D 4 HOH A 92 592 101 HOH HOH . 
D 4 HOH A 93 593 28 HOH HOH . 
D 4 HOH A 94 594 12 HOH HOH . 
D 4 HOH A 95 595 7 HOH HOH . 
D 4 HOH A 96 596 152 HOH HOH . 
D 4 HOH A 97 597 146 HOH HOH . 
D 4 HOH A 98 598 61 HOH HOH . 
D 4 HOH A 99 599 119 HOH HOH . 
D 4 HOH A 100 600 3 HOH HOH . 
D 4 HOH A 101 601 18 HOH HOH . 
D 4 HOH A 102 602 60 HOH HOH . 
D 4 HOH A 103 603 70 HOH HOH . 
D 4 HOH A 104 604 15 HOH HOH . 
D 4 HOH A 105 605 141 HOH HOH . 
D 4 HOH A 106 606 59 HOH HOH . 
D 4 HOH A 107 607 92 HOH HOH . 
D 4 HOH A 108 608 111 HOH HOH . 
D 4 HOH A 109 609 143 HOH HOH . 
D 4 HOH A 110 610 167 HOH HOH . 
D 4 HOH A 111 611 174 HOH HOH . 
D 4 HOH A 112 612 20 HOH HOH . 
D 4 HOH A 113 613 125 HOH HOH . 
D 4 HOH A 114 614 57 HOH HOH . 
D 4 HOH A 115 615 74 HOH HOH . 
D 4 HOH A 116 616 86 HOH HOH . 
D 4 HOH A 117 617 58 HOH HOH . 
D 4 HOH A 118 618 78 HOH HOH . 
D 4 HOH A 119 619 117 HOH HOH . 
D 4 HOH A 120 620 133 HOH HOH . 
D 4 HOH A 121 621 109 HOH HOH . 
D 4 HOH A 122 622 173 HOH HOH . 
D 4 HOH A 123 623 83 HOH HOH . 
D 4 HOH A 124 624 142 HOH HOH . 
D 4 HOH A 125 625 122 HOH HOH . 
D 4 HOH A 126 626 175 HOH HOH . 
D 4 HOH A 127 627 150 HOH HOH . 
D 4 HOH A 128 628 77 HOH HOH . 
D 4 HOH A 129 629 80 HOH HOH . 
D 4 HOH A 130 630 160 HOH HOH . 
D 4 HOH A 131 631 103 HOH HOH . 
D 4 HOH A 132 632 102 HOH HOH . 
D 4 HOH A 133 633 24 HOH HOH . 
D 4 HOH A 134 634 158 HOH HOH . 
D 4 HOH A 135 635 127 HOH HOH . 
D 4 HOH A 136 636 82 HOH HOH . 
D 4 HOH A 137 637 84 HOH HOH . 
D 4 HOH A 138 638 26 HOH HOH . 
D 4 HOH A 139 639 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ACP . . . C 3 6.135 40.641 -25.724 1 49.16 ? PG ACP 402 A 1 
HETATM 2 O O1G ACP . . . C 3 7.078 40.042 -26.704 1 47.42 ? O1G ACP 402 A 1 
HETATM 3 O O2G ACP . . . C 3 6.721 42.049 -25.188 1 48.15 ? O2G ACP 402 A 1 
HETATM 4 O O3G ACP . . . C 3 5.742 39.634 -24.515 1 52.58 ? O3G ACP 402 A 1 
HETATM 5 P PB ACP . . . C 3 4.618 40.554 -28.255 1 28.68 ? PB ACP 402 A 1 
HETATM 6 O O1B ACP . . . C 3 5.008 39.155 -28.462 1 24.48 ? O1B ACP 402 A 1 
HETATM 7 O O2B ACP . . . C 3 3.05 40.72 -28.586 1 32.04 ? O2B ACP 402 A 1 
HETATM 8 C C3B ACP . . . C 3 4.583 41.043 -26.529 1 34.5 ? C3B ACP 402 A 1 
HETATM 9 P PA ACP . . . C 3 6.518 41.383 -30.183 1 26.57 ? PA ACP 402 A 1 
HETATM 10 O O1A ACP . . . C 3 7.416 40.3 -29.607 1 26.78 ? O1A ACP 402 A 1 
HETATM 11 O O2A ACP . . . C 3 7.155 42.703 -30.504 1 24.82 ? O2A ACP 402 A 1 
HETATM 12 O O3A ACP . . . C 3 5.358 41.695 -29.092 1 27.56 ? O3A ACP 402 A 1 
HETATM 13 O O5' ACP . . . C 3 5.715 40.762 -31.424 1 28.56 ? O5' ACP 402 A 1 
HETATM 14 C C5' ACP . . . C 3 4.655 41.598 -31.879 1 31.07 ? C5' ACP 402 A 1 
HETATM 15 C C4' ACP . . . C 3 3.622 40.756 -32.597 1 29.84 ? C4' ACP 402 A 1 
HETATM 16 O O4' ACP . . . C 3 4.212 40.206 -33.777 1 24.74 ? O4' ACP 402 A 1 
HETATM 17 C C3' ACP . . . C 3 3.137 39.549 -31.829 1 32.14 ? C3' ACP 402 A 1 
HETATM 18 O O3' ACP . . . C 3 2.05 39.887 -30.954 1 36.68 ? O3' ACP 402 A 1 
HETATM 19 C C2' ACP . . . C 3 2.688 38.627 -32.919 1 26.2 ? C2' ACP 402 A 1 
HETATM 20 O O2' ACP . . . C 3 1.347 39.019 -33.31 1 28.92 ? O2' ACP 402 A 1 
HETATM 21 C C1' ACP . . . C 3 3.577 38.99 -34.099 1 22.78 ? C1' ACP 402 A 1 
HETATM 22 N N9 ACP . . . C 3 4.683 38.015 -34.24 1 23.16 ? N9 ACP 402 A 1 
HETATM 23 C C8 ACP . . . C 3 5.971 38.285 -33.97 1 23.46 ? C8 ACP 402 A 1 
HETATM 24 N N7 ACP . . . C 3 6.735 37.213 -34.235 1 20.59 ? N7 ACP 402 A 1 
HETATM 25 C C5 ACP . . . C 3 5.924 36.265 -34.717 1 18.96 ? C5 ACP 402 A 1 
HETATM 26 C C6 ACP . . . C 3 6.094 34.9 -35.229 1 19.83 ? C6 ACP 402 A 1 
HETATM 27 N N6 ACP . . . C 3 7.338 34.317 -35.233 1 25.27 ? N6 ACP 402 A 1 
HETATM 28 N N1 ACP . . . C 3 5.006 34.248 -35.64 1 23.24 ? N1 ACP 402 A 1 
HETATM 29 C C2 ACP . . . C 3 3.78 34.823 -35.644 1 23.64 ? C2 ACP 402 A 1 
HETATM 30 N N3 ACP . . . C 3 3.524 36.048 -35.187 1 23.06 ? N3 ACP 402 A 1 
HETATM 31 C C4 ACP . . . C 3 4.568 36.813 -34.74 1 19.93 ? C4 ACP 402 A 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#