data_6LZL
#
_model_server_result.job_id            M4z3ktMtNzIXFrUfmJi-pw 
_model_server_result.datetime_utc      '2024-10-11 00:27:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6lzl 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
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_entry.id    6LZL 
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_exptl.entry_id    6LZL 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              156.096 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OROTIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6LZL 
_cell.length_a            90.413 
_cell.length_b            90.413 
_cell.length_c            122.699 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6LZL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H4 N2 O4' 
_chem_comp.formula_weight    156.096 
_chem_comp.id                ORO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OROTIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 ORO sing 320 n y 
N1 C6 ORO sing 321 n y 
N1 HN1 ORO sing 322 n n 
C2 O2 ORO doub 323 n n 
C2 N3 ORO sing 324 n y 
N3 C4 ORO sing 325 n y 
N3 HN3 ORO sing 326 n n 
C4 O4 ORO doub 327 n n 
C4 C5 ORO sing 328 n y 
C5 C6 ORO doub 329 n y 
C5 H5 ORO sing 330 n n 
C6 C7 ORO sing 331 n n 
C7 O71 ORO doub 332 n n 
C7 O72 ORO sing 333 n n 
O72 HO7 ORO sing 334 n n 
#
_atom_sites.entry_id                     6LZL 
_atom_sites.fract_transf_matrix[1][1]    0.01106 
_atom_sites.fract_transf_matrix[1][2]    0.006386 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012771 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00815 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ORO A 1 401 1 ORO ORO . 
C 3 FMN A 1 402 1 FMN FMN . 
D 4 AYR A 1 403 1 AYR 044 . 
E 5 HOH A 1 501 67 HOH HOH . 
E 5 HOH A 2 502 89 HOH HOH . 
E 5 HOH A 3 503 44 HOH HOH . 
E 5 HOH A 4 504 30 HOH HOH . 
E 5 HOH A 5 505 123 HOH HOH . 
E 5 HOH A 6 506 73 HOH HOH . 
E 5 HOH A 7 507 107 HOH HOH . 
E 5 HOH A 8 508 13 HOH HOH . 
E 5 HOH A 9 509 90 HOH HOH . 
E 5 HOH A 10 510 31 HOH HOH . 
E 5 HOH A 11 511 22 HOH HOH . 
E 5 HOH A 12 512 32 HOH HOH . 
E 5 HOH A 13 513 112 HOH HOH . 
E 5 HOH A 14 514 16 HOH HOH . 
E 5 HOH A 15 515 93 HOH HOH . 
E 5 HOH A 16 516 50 HOH HOH . 
E 5 HOH A 17 517 85 HOH HOH . 
E 5 HOH A 18 518 106 HOH HOH . 
E 5 HOH A 19 519 17 HOH HOH . 
E 5 HOH A 20 520 25 HOH HOH . 
E 5 HOH A 21 521 72 HOH HOH . 
E 5 HOH A 22 522 41 HOH HOH . 
E 5 HOH A 23 523 46 HOH HOH . 
E 5 HOH A 24 524 14 HOH HOH . 
E 5 HOH A 25 525 56 HOH HOH . 
E 5 HOH A 26 526 97 HOH HOH . 
E 5 HOH A 27 527 68 HOH HOH . 
E 5 HOH A 28 528 36 HOH HOH . 
E 5 HOH A 29 529 27 HOH HOH . 
E 5 HOH A 30 530 4 HOH HOH . 
E 5 HOH A 31 531 40 HOH HOH . 
E 5 HOH A 32 532 38 HOH HOH . 
E 5 HOH A 33 533 92 HOH HOH . 
E 5 HOH A 34 534 77 HOH HOH . 
E 5 HOH A 35 535 23 HOH HOH . 
E 5 HOH A 36 536 58 HOH HOH . 
E 5 HOH A 37 537 75 HOH HOH . 
E 5 HOH A 38 538 6 HOH HOH . 
E 5 HOH A 39 539 102 HOH HOH . 
E 5 HOH A 40 540 74 HOH HOH . 
E 5 HOH A 41 541 20 HOH HOH . 
E 5 HOH A 42 542 63 HOH HOH . 
E 5 HOH A 43 543 24 HOH HOH . 
E 5 HOH A 44 544 165 HOH HOH . 
E 5 HOH A 45 545 95 HOH HOH . 
E 5 HOH A 46 546 78 HOH HOH . 
E 5 HOH A 47 547 1 HOH HOH . 
E 5 HOH A 48 548 101 HOH HOH . 
E 5 HOH A 49 549 35 HOH HOH . 
E 5 HOH A 50 550 2 HOH HOH . 
E 5 HOH A 51 551 104 HOH HOH . 
E 5 HOH A 52 552 69 HOH HOH . 
E 5 HOH A 53 553 39 HOH HOH . 
E 5 HOH A 54 554 26 HOH HOH . 
E 5 HOH A 55 555 42 HOH HOH . 
E 5 HOH A 56 556 103 HOH HOH . 
E 5 HOH A 57 557 96 HOH HOH . 
E 5 HOH A 58 558 117 HOH HOH . 
E 5 HOH A 59 559 66 HOH HOH . 
E 5 HOH A 60 560 37 HOH HOH . 
E 5 HOH A 61 561 87 HOH HOH . 
E 5 HOH A 62 562 9 HOH HOH . 
E 5 HOH A 63 563 28 HOH HOH . 
E 5 HOH A 64 564 12 HOH HOH . 
E 5 HOH A 65 565 84 HOH HOH . 
E 5 HOH A 66 566 11 HOH HOH . 
E 5 HOH A 67 567 45 HOH HOH . 
E 5 HOH A 68 568 124 HOH HOH . 
E 5 HOH A 69 569 81 HOH HOH . 
E 5 HOH A 70 570 53 HOH HOH . 
E 5 HOH A 71 571 29 HOH HOH . 
E 5 HOH A 72 572 64 HOH HOH . 
E 5 HOH A 73 573 10 HOH HOH . 
E 5 HOH A 74 574 52 HOH HOH . 
E 5 HOH A 75 575 15 HOH HOH . 
E 5 HOH A 76 576 33 HOH HOH . 
E 5 HOH A 77 577 76 HOH HOH . 
E 5 HOH A 78 578 21 HOH HOH . 
E 5 HOH A 79 579 100 HOH HOH . 
E 5 HOH A 80 580 115 HOH HOH . 
E 5 HOH A 81 581 3 HOH HOH . 
E 5 HOH A 82 582 71 HOH HOH . 
E 5 HOH A 83 583 7 HOH HOH . 
E 5 HOH A 84 584 83 HOH HOH . 
E 5 HOH A 85 585 121 HOH HOH . 
E 5 HOH A 86 586 57 HOH HOH . 
E 5 HOH A 87 587 51 HOH HOH . 
E 5 HOH A 88 588 98 HOH HOH . 
E 5 HOH A 89 589 91 HOH HOH . 
E 5 HOH A 90 590 120 HOH HOH . 
E 5 HOH A 91 591 166 HOH HOH . 
E 5 HOH A 92 592 164 HOH HOH . 
E 5 HOH A 93 593 167 HOH HOH . 
E 5 HOH A 94 594 70 HOH HOH . 
E 5 HOH A 95 595 99 HOH HOH . 
E 5 HOH A 96 596 47 HOH HOH . 
E 5 HOH A 97 597 116 HOH HOH . 
E 5 HOH A 98 598 79 HOH HOH . 
E 5 HOH A 99 599 163 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 ORO . . . B 2 41.78 -20.446 13.234 1 19.12 ? N1 ORO 401 A 1 
HETATM 2 C C2 ORO . . . B 2 41.564 -19.103 12.879 1 17.68 ? C2 ORO 401 A 1 
HETATM 3 O O2 ORO . . . B 2 41.627 -18.685 11.71 1 16.44 ? O2 ORO 401 A 1 
HETATM 4 N N3 ORO . . . B 2 41.33 -18.193 13.863 1 15.67 ? N3 ORO 401 A 1 
HETATM 5 C C4 ORO . . . B 2 41.238 -18.534 15.139 1 16.43 ? C4 ORO 401 A 1 
HETATM 6 O O4 ORO . . . B 2 40.993 -17.651 16.037 1 15.75 ? O4 ORO 401 A 1 
HETATM 7 C C5 ORO . . . B 2 41.462 -19.832 15.472 1 14.97 ? C5 ORO 401 A 1 
HETATM 8 C C6 ORO . . . B 2 41.741 -20.803 14.581 1 16.61 ? C6 ORO 401 A 1 
HETATM 9 C C7 ORO . . . B 2 42.112 -22.133 15.068 1 19.04 ? C7 ORO 401 A 1 
HETATM 10 O O71 ORO . . . B 2 41.833 -23.179 14.44 1 20.25 ? O71 ORO 401 A 1 
HETATM 11 O O72 ORO . . . B 2 42.959 -22.151 16.053 1 18.62 ? O72 ORO 401 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           11 
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