data_6LZT # _model_server_result.job_id rCgG6H3V5ps8MVIot3rHXg _model_server_result.datetime_utc '2025-03-06 01:36:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lzt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6LZT # _exptl.entry_id 6LZT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.98 _cell.angle_gamma 90 _cell.entry_id 6LZT _cell.length_a 59.466 _cell.length_b 56.444 _cell.length_c 80.881 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LZT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG D 1 CBS 2 n B NAG 2 B 2 NAG D 1 CBS # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 182 A CYS 180 1_555 A SG CYS 197 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 sing metalc ? metalc1 A O ASN 192 A ASN 190 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 A OD1 ASN 192 A ASN 190 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 A OD1 ASP 340 A ASP 338 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc4 A OD1 ASN 342 A ASN 340 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc5 A OD1 ASP 344 A ASP 342 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc6 A O PHE 346 A PHE 344 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 A OD1 ASP 348 A ASP 346 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc8 A OD2 ASP 348 A ASP 346 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc9 A O LEU 526 A LEU 524 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc10 D CA CA . A CA 603 1_555 E O HOH . A HOH 747 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc11 D CA CA . A CA 603 1_555 E O HOH . A HOH 758 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6LZT _atom_sites.fract_transf_matrix[1][1] 0.016816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 602 2 MG MG . D 4 CA A 1 603 1 CA CA . E 5 HOH A 1 701 107 HOH HOH . E 5 HOH A 2 702 47 HOH HOH . E 5 HOH A 3 703 71 HOH HOH . E 5 HOH A 4 704 54 HOH HOH . E 5 HOH A 5 705 11 HOH HOH . E 5 HOH A 6 706 1 HOH HOH . E 5 HOH A 7 707 77 HOH HOH . E 5 HOH A 8 708 85 HOH HOH . E 5 HOH A 9 709 87 HOH HOH . E 5 HOH A 10 710 79 HOH HOH . E 5 HOH A 11 711 22 HOH HOH . E 5 HOH A 12 712 8 HOH HOH . E 5 HOH A 13 713 72 HOH HOH . E 5 HOH A 14 714 52 HOH HOH . E 5 HOH A 15 715 58 HOH HOH . E 5 HOH A 16 716 9 HOH HOH . E 5 HOH A 17 717 23 HOH HOH . E 5 HOH A 18 718 21 HOH HOH . E 5 HOH A 19 719 10 HOH HOH . E 5 HOH A 20 720 25 HOH HOH . E 5 HOH A 21 721 69 HOH HOH . E 5 HOH A 22 722 33 HOH HOH . E 5 HOH A 23 723 106 HOH HOH . E 5 HOH A 24 724 46 HOH HOH . E 5 HOH A 25 725 55 HOH HOH . E 5 HOH A 26 726 20 HOH HOH . E 5 HOH A 27 727 88 HOH HOH . E 5 HOH A 28 728 44 HOH HOH . E 5 HOH A 29 729 63 HOH HOH . E 5 HOH A 30 730 2 HOH HOH . E 5 HOH A 31 731 14 HOH HOH . E 5 HOH A 32 732 17 HOH HOH . E 5 HOH A 33 733 5 HOH HOH . E 5 HOH A 34 734 4 HOH HOH . E 5 HOH A 35 735 38 HOH HOH . E 5 HOH A 36 736 105 HOH HOH . E 5 HOH A 37 737 36 HOH HOH . E 5 HOH A 38 738 57 HOH HOH . E 5 HOH A 39 739 84 HOH HOH . E 5 HOH A 40 740 81 HOH HOH . E 5 HOH A 41 741 34 HOH HOH . E 5 HOH A 42 742 53 HOH HOH . E 5 HOH A 43 743 32 HOH HOH . E 5 HOH A 44 744 103 HOH HOH . E 5 HOH A 45 745 24 HOH HOH . E 5 HOH A 46 746 45 HOH HOH . E 5 HOH A 47 747 135 HOH HOH . E 5 HOH A 48 748 117 HOH HOH . E 5 HOH A 49 749 93 HOH HOH . E 5 HOH A 50 750 99 HOH HOH . E 5 HOH A 51 751 16 HOH HOH . E 5 HOH A 52 752 82 HOH HOH . E 5 HOH A 53 753 75 HOH HOH . E 5 HOH A 54 754 98 HOH HOH . E 5 HOH A 55 755 104 HOH HOH . E 5 HOH A 56 756 27 HOH HOH . E 5 HOH A 57 757 95 HOH HOH . E 5 HOH A 58 758 121 HOH HOH . E 5 HOH A 59 759 116 HOH HOH . E 5 HOH A 60 760 86 HOH HOH . E 5 HOH A 61 761 31 HOH HOH . E 5 HOH A 62 762 29 HOH HOH . E 5 HOH A 63 763 6 HOH HOH . E 5 HOH A 64 764 26 HOH HOH . E 5 HOH A 65 765 70 HOH HOH . E 5 HOH A 66 766 43 HOH HOH . E 5 HOH A 67 767 30 HOH HOH . E 5 HOH A 68 768 91 HOH HOH . E 5 HOH A 69 769 50 HOH HOH . E 5 HOH A 70 770 39 HOH HOH . E 5 HOH A 71 771 42 HOH HOH . E 5 HOH A 72 772 15 HOH HOH . E 5 HOH A 73 773 61 HOH HOH . E 5 HOH A 74 774 51 HOH HOH . E 5 HOH A 75 775 83 HOH HOH . E 5 HOH A 76 776 90 HOH HOH . E 5 HOH A 77 777 13 HOH HOH . E 5 HOH A 78 778 113 HOH HOH . E 5 HOH A 79 779 3 HOH HOH . E 5 HOH A 80 780 12 HOH HOH . E 5 HOH A 81 781 40 HOH HOH . E 5 HOH A 82 782 67 HOH HOH . E 5 HOH A 83 783 37 HOH HOH . E 5 HOH A 84 784 35 HOH HOH . E 5 HOH A 85 785 94 HOH HOH . E 5 HOH A 86 786 134 HOH HOH . E 5 HOH A 87 787 28 HOH HOH . E 5 HOH A 88 788 114 HOH HOH . E 5 HOH A 89 789 18 HOH HOH . E 5 HOH A 90 790 60 HOH HOH . E 5 HOH A 91 791 59 HOH HOH . E 5 HOH A 92 792 73 HOH HOH . E 5 HOH A 93 793 118 HOH HOH . E 5 HOH A 94 794 64 HOH HOH . E 5 HOH A 95 795 120 HOH HOH . E 5 HOH A 96 796 56 HOH HOH . E 5 HOH A 97 797 19 HOH HOH . E 5 HOH A 98 798 119 HOH HOH . E 5 HOH A 99 799 48 HOH HOH . E 5 HOH A 100 800 92 HOH HOH . E 5 HOH A 101 801 66 HOH HOH . E 5 HOH A 102 802 97 HOH HOH . E 5 HOH A 103 803 96 HOH HOH . E 5 HOH A 104 804 100 HOH HOH . E 5 HOH A 105 805 124 HOH HOH . E 5 HOH A 106 806 129 HOH HOH . E 5 HOH A 107 807 7 HOH HOH . E 5 HOH A 108 808 80 HOH HOH . E 5 HOH A 109 809 123 HOH HOH . E 5 HOH A 110 810 110 HOH HOH . E 5 HOH A 111 811 130 HOH HOH . E 5 HOH A 112 812 102 HOH HOH . E 5 HOH A 113 813 115 HOH HOH . E 5 HOH A 114 814 125 HOH HOH . E 5 HOH A 115 815 122 HOH HOH . E 5 HOH A 116 816 131 HOH HOH . E 5 HOH A 117 817 127 HOH HOH . E 5 HOH A 118 818 133 HOH HOH . E 5 HOH A 119 819 111 HOH HOH . E 5 HOH A 120 820 101 HOH HOH . E 5 HOH A 121 821 65 HOH HOH . E 5 HOH A 122 822 132 HOH HOH . E 5 HOH A 123 823 128 HOH HOH . E 5 HOH A 124 824 126 HOH HOH . E 5 HOH A 125 825 137 HOH HOH . E 5 HOH A 126 826 74 HOH HOH . E 5 HOH A 127 827 41 HOH HOH . E 5 HOH A 128 828 109 HOH HOH . E 5 HOH A 129 829 68 HOH HOH . E 5 HOH A 130 830 89 HOH HOH . E 5 HOH A 131 831 49 HOH HOH . E 5 HOH A 132 832 78 HOH HOH . E 5 HOH A 133 833 62 HOH HOH . E 5 HOH A 134 834 76 HOH HOH . E 5 HOH A 135 835 108 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 4.055 _atom_site.Cartn_y -5.344 _atom_site.Cartn_z 43.297 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #