data_6LZW # _model_server_result.job_id 8KV6ZhNb0kdDLlE0dXGiHw _model_server_result.datetime_utc '2024-11-29 12:56:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lzw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6LZW # _exptl.entry_id 6LZW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.7 _cell.angle_gamma 90 _cell.entry_id 6LZW _cell.length_a 61.681 _cell.length_b 57.113 _cell.length_c 81.515 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LZW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 G 1 NAG F 1 CBS 2 n B NAG 2 G 2 NAG F 1 CBS # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 182 A CYS 180 1_555 A SG CYS 197 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B O4 NAG . G NAG 1 1_555 B C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? metalc ? metalc1 A O ASN 192 A ASN 190 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc2 A OD1 ASN 192 A ASN 190 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc3 A OD1 ASP 340 A ASP 338 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc4 A OD1 ASN 342 A ASN 340 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc5 A OD1 ASP 344 A ASP 342 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc6 A O PHE 346 A PHE 344 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc7 A OD1 ASP 348 A ASP 346 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc8 A OD2 ASP 348 A ASP 346 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc9 A O LEU 526 A LEU 524 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc10 F MG MG . A MG 604 1_555 G O HOH . A HOH 718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc11 F MG MG . A MG 604 1_555 G O HOH . A HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6LZW _atom_sites.fract_transf_matrix[1][1] 0.016212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003358 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 601 1 EDO EDO . D 4 CA A 1 602 1 CA CA . E 5 CL A 1 603 1 CL CL . F 6 MG A 1 604 1 MG MG . G 7 HOH A 1 701 86 HOH HOH . G 7 HOH A 2 702 14 HOH HOH . G 7 HOH A 3 703 13 HOH HOH . G 7 HOH A 4 704 110 HOH HOH . G 7 HOH A 5 705 80 HOH HOH . G 7 HOH A 6 706 24 HOH HOH . G 7 HOH A 7 707 11 HOH HOH . G 7 HOH A 8 708 84 HOH HOH . G 7 HOH A 9 709 38 HOH HOH . G 7 HOH A 10 710 15 HOH HOH . G 7 HOH A 11 711 48 HOH HOH . G 7 HOH A 12 712 59 HOH HOH . G 7 HOH A 13 713 7 HOH HOH . G 7 HOH A 14 714 35 HOH HOH . G 7 HOH A 15 715 116 HOH HOH . G 7 HOH A 16 716 4 HOH HOH . G 7 HOH A 17 717 42 HOH HOH . G 7 HOH A 18 718 85 HOH HOH . G 7 HOH A 19 719 50 HOH HOH . G 7 HOH A 20 720 21 HOH HOH . G 7 HOH A 21 721 1 HOH HOH . G 7 HOH A 22 722 103 HOH HOH . G 7 HOH A 23 723 60 HOH HOH . G 7 HOH A 24 724 68 HOH HOH . G 7 HOH A 25 725 30 HOH HOH . G 7 HOH A 26 726 72 HOH HOH . G 7 HOH A 27 727 20 HOH HOH . G 7 HOH A 28 728 108 HOH HOH . G 7 HOH A 29 729 69 HOH HOH . G 7 HOH A 30 730 102 HOH HOH . G 7 HOH A 31 731 5 HOH HOH . G 7 HOH A 32 732 47 HOH HOH . G 7 HOH A 33 733 74 HOH HOH . G 7 HOH A 34 734 29 HOH HOH . G 7 HOH A 35 735 12 HOH HOH . G 7 HOH A 36 736 37 HOH HOH . G 7 HOH A 37 737 104 HOH HOH . G 7 HOH A 38 738 129 HOH HOH . G 7 HOH A 39 739 43 HOH HOH . G 7 HOH A 40 740 65 HOH HOH . G 7 HOH A 41 741 76 HOH HOH . G 7 HOH A 42 742 55 HOH HOH . G 7 HOH A 43 743 77 HOH HOH . G 7 HOH A 44 744 88 HOH HOH . G 7 HOH A 45 745 23 HOH HOH . G 7 HOH A 46 746 99 HOH HOH . G 7 HOH A 47 747 25 HOH HOH . G 7 HOH A 48 748 97 HOH HOH . G 7 HOH A 49 749 70 HOH HOH . G 7 HOH A 50 750 45 HOH HOH . G 7 HOH A 51 751 44 HOH HOH . G 7 HOH A 52 752 36 HOH HOH . G 7 HOH A 53 753 33 HOH HOH . G 7 HOH A 54 754 58 HOH HOH . G 7 HOH A 55 755 134 HOH HOH . G 7 HOH A 56 756 41 HOH HOH . G 7 HOH A 57 757 9 HOH HOH . G 7 HOH A 58 758 51 HOH HOH . G 7 HOH A 59 759 113 HOH HOH . G 7 HOH A 60 760 27 HOH HOH . G 7 HOH A 61 761 16 HOH HOH . G 7 HOH A 62 762 34 HOH HOH . G 7 HOH A 63 763 46 HOH HOH . G 7 HOH A 64 764 66 HOH HOH . G 7 HOH A 65 765 79 HOH HOH . G 7 HOH A 66 766 109 HOH HOH . G 7 HOH A 67 767 67 HOH HOH . G 7 HOH A 68 768 6 HOH HOH . G 7 HOH A 69 769 53 HOH HOH . G 7 HOH A 70 770 56 HOH HOH . G 7 HOH A 71 771 98 HOH HOH . G 7 HOH A 72 772 22 HOH HOH . G 7 HOH A 73 773 40 HOH HOH . G 7 HOH A 74 774 101 HOH HOH . G 7 HOH A 75 775 100 HOH HOH . G 7 HOH A 76 776 78 HOH HOH . G 7 HOH A 77 777 95 HOH HOH . G 7 HOH A 78 778 106 HOH HOH . G 7 HOH A 79 779 62 HOH HOH . G 7 HOH A 80 780 82 HOH HOH . G 7 HOH A 81 781 8 HOH HOH . G 7 HOH A 82 782 105 HOH HOH . G 7 HOH A 83 783 63 HOH HOH . G 7 HOH A 84 784 61 HOH HOH . G 7 HOH A 85 785 2 HOH HOH . G 7 HOH A 86 786 54 HOH HOH . G 7 HOH A 87 787 91 HOH HOH . G 7 HOH A 88 788 94 HOH HOH . G 7 HOH A 89 789 123 HOH HOH . G 7 HOH A 90 790 19 HOH HOH . G 7 HOH A 91 791 83 HOH HOH . G 7 HOH A 92 792 39 HOH HOH . G 7 HOH A 93 793 71 HOH HOH . G 7 HOH A 94 794 17 HOH HOH . G 7 HOH A 95 795 96 HOH HOH . G 7 HOH A 96 796 111 HOH HOH . G 7 HOH A 97 797 107 HOH HOH . G 7 HOH A 98 798 10 HOH HOH . G 7 HOH A 99 799 131 HOH HOH . G 7 HOH A 100 800 119 HOH HOH . G 7 HOH A 101 801 31 HOH HOH . G 7 HOH A 102 802 132 HOH HOH . G 7 HOH A 103 803 28 HOH HOH . G 7 HOH A 104 804 75 HOH HOH . G 7 HOH A 105 805 87 HOH HOH . G 7 HOH A 106 806 118 HOH HOH . G 7 HOH A 107 807 92 HOH HOH . G 7 HOH A 108 808 32 HOH HOH . G 7 HOH A 109 809 127 HOH HOH . G 7 HOH A 110 810 90 HOH HOH . G 7 HOH A 111 811 138 HOH HOH . G 7 HOH A 112 812 126 HOH HOH . G 7 HOH A 113 813 120 HOH HOH . G 7 HOH A 114 814 139 HOH HOH . G 7 HOH A 115 815 130 HOH HOH . G 7 HOH A 116 816 121 HOH HOH . G 7 HOH A 117 817 3 HOH HOH . G 7 HOH A 118 818 81 HOH HOH . G 7 HOH A 119 819 137 HOH HOH . G 7 HOH A 120 820 136 HOH HOH . G 7 HOH A 121 821 57 HOH HOH . G 7 HOH A 122 822 112 HOH HOH . G 7 HOH A 123 823 135 HOH HOH . G 7 HOH A 124 824 89 HOH HOH . G 7 HOH A 125 825 26 HOH HOH . G 7 HOH A 126 826 128 HOH HOH . G 7 HOH A 127 827 64 HOH HOH . G 7 HOH A 128 828 93 HOH HOH . G 7 HOH A 129 829 52 HOH HOH . G 7 HOH A 130 830 114 HOH HOH . G 7 HOH A 131 831 115 HOH HOH . G 7 HOH A 132 832 73 HOH HOH . G 7 HOH A 133 833 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 22.978 -21.575 23.811 1 26.68 ? C1 EDO 601 A 1 HETATM 2 O O1 EDO . . . C 3 23.919 -21.789 22.766 1 24.95 ? O1 EDO 601 A 1 HETATM 3 C C2 EDO . . . C 3 23.435 -22.07 25.138 1 25.93 ? C2 EDO 601 A 1 HETATM 4 O O2 EDO . . . C 3 23.451 -23.478 25.279 1 33.99 ? O2 EDO 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 4 #