data_6LZX # _model_server_result.job_id fbXhwd-EusEu8ScSfS4Baw _model_server_result.datetime_utc '2024-11-28 11:19:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lzx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6LZX # _exptl.entry_id 6LZX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 220.263 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4,7,10,13-pentaoxacyclopentadecane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LZX _cell.length_a 93.173 _cell.length_b 103.298 _cell.length_c 110.383 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LZX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 258 A GLU 238 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc2 C O1 EYO . A EYO 501 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc3 C O5 EYO . A EYO 501 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc4 C O4 EYO . A EYO 501 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc5 C O3 EYO . A EYO 501 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc6 C O2 EYO . A EYO 501 1_555 D NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc7 D NA NA . A NA 502 1_555 B O GLU 258 B GLU 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? # _chem_comp.formula 'C10 H20 O5' _chem_comp.formula_weight 220.263 _chem_comp.id EYO _chem_comp.mon_nstd_flag . _chem_comp.name 1,4,7,10,13-pentaoxacyclopentadecane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C6 EYO sing 92 n n C5 O3 EYO sing 93 n n C4 O3 EYO sing 94 n n C4 C3 EYO sing 95 n n C6 O4 EYO sing 96 n n C3 O2 EYO sing 97 n n O2 C2 EYO sing 98 n n O4 C7 EYO sing 99 n n C7 C8 EYO sing 100 n n C2 C1 EYO sing 101 n n C8 O5 EYO sing 102 n n O5 C10 EYO sing 103 n n O1 C1 EYO sing 104 n n O1 C9 EYO sing 105 n n C9 C10 EYO sing 106 n n C4 H1 EYO sing 107 n n C4 H2 EYO sing 108 n n C5 H3 EYO sing 109 n n C5 H4 EYO sing 110 n n C6 H5 EYO sing 111 n n C6 H6 EYO sing 112 n n C7 H7 EYO sing 113 n n C7 H8 EYO sing 114 n n C8 H9 EYO sing 115 n n C8 H10 EYO sing 116 n n C10 H11 EYO sing 117 n n C10 H12 EYO sing 118 n n C9 H13 EYO sing 119 n n C9 H14 EYO sing 120 n n C3 H15 EYO sing 121 n n C3 H16 EYO sing 122 n n C2 H17 EYO sing 123 n n C2 H18 EYO sing 124 n n C1 H19 EYO sing 125 n n C1 H20 EYO sing 126 n n # _atom_sites.entry_id 6LZX _atom_sites.fract_transf_matrix[1][1] 0.010733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EYO A 1 501 501 EYO LIG . D 3 NA A 1 502 601 NA NA . E 4 BR A 1 503 701 BR BR . F 4 BR A 1 504 801 BR BR . G 4 BR B 1 501 501 BR BR . H 4 BR B 1 502 601 BR BR . I 5 EDO B 1 503 1001 EDO EDO . J 6 HOH A 1 1601 1601 HOH HOH . J 6 HOH A 2 1602 1301 HOH HOH . J 6 HOH A 3 1603 1201 HOH HOH . J 6 HOH A 4 1604 1101 HOH HOH . J 6 HOH A 5 1605 1401 HOH HOH . K 6 HOH B 1 901 901 HOH HOH . K 6 HOH B 2 902 1201 HOH HOH . K 6 HOH B 3 903 1501 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 EYO . . . C 2 7.775 15.427 -43.755 1 55.6 ? C4 EYO 501 A 1 HETATM 2 C C5 EYO . . . C 2 9.693 13.913 -43.901 1 57.57 ? C5 EYO 501 A 1 HETATM 3 C C6 EYO . . . C 2 9.875 12.396 -43.581 1 54.74 ? C6 EYO 501 A 1 HETATM 4 C C7 EYO . . . C 2 9.097 10.505 -42.254 1 50.06 ? C7 EYO 501 A 1 HETATM 5 C C8 EYO . . . C 2 8.401 10.13 -40.917 1 52.9 ? C8 EYO 501 A 1 HETATM 6 C C10 EYO . . . C 2 6.463 10.912 -39.588 1 55.7 ? C10 EYO 501 A 1 HETATM 7 C C9 EYO . . . C 2 5.229 11.875 -39.623 1 51.98 ? C9 EYO 501 A 1 HETATM 8 O O1 EYO . . . C 2 5.454 13.044 -40.437 1 46.19 ? O1 EYO 501 A 1 HETATM 9 O O5 EYO . . . C 2 6.99 10.484 -40.879 1 55.95 ? O5 EYO 501 A 1 HETATM 10 O O4 EYO . . . C 2 9.198 11.933 -42.396 1 50.43 ? O4 EYO 501 A 1 HETATM 11 O O3 EYO . . . C 2 8.732 14.6 -43.054 1 57.43 ? O3 EYO 501 A 1 HETATM 12 C C3 EYO . . . C 2 6.668 15.982 -42.824 1 54.15 ? C3 EYO 501 A 1 HETATM 13 O O2 EYO . . . C 2 5.633 15.017 -42.509 1 52.05 ? O2 EYO 501 A 1 HETATM 14 C C2 EYO . . . C 2 4.796 15.304 -41.359 1 50.4 ? C2 EYO 501 A 1 HETATM 15 C C1 EYO . . . C 2 4.474 14.098 -40.418 1 48.68 ? C1 EYO 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #