data_6LZY # _model_server_result.job_id o0I3RcnWlXBt-f6q-UFSVQ _model_server_result.datetime_utc '2024-11-22 18:07:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6lzy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":505}' # _entry.id 6LZY # _exptl.entry_id 6LZY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6LZY _cell.length_a 93.732 _cell.length_b 103.864 _cell.length_c 111.638 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6LZY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 258 A GLU 238 1_555 I NA NA . A NA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc2 I NA NA . A NA 607 1_555 B O GLU 258 B GLU 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc3 I NA NA . A NA 607 1_555 J OAO O4B . B O4B 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc4 I NA NA . A NA 607 1_555 J OAQ O4B . B O4B 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc5 I NA NA . A NA 607 1_555 J OAR O4B . B O4B 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc6 I NA NA . A NA 607 1_555 J OAP O4B . B O4B 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc7 I NA NA . A NA 607 1_555 J OAM O4B . B O4B 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc8 I NA NA . A NA 607 1_555 J OAN O4B . B O4B 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6LZY _atom_sites.fract_transf_matrix[1][1] 0.010669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BR A 1 601 601 BR BR . D 2 BR A 1 602 701 BR BR . E 3 EDO A 1 603 801 EDO EDO . F 3 EDO A 1 604 901 EDO EDO . G 3 EDO A 1 605 1001 EDO EDO . H 3 EDO A 1 606 1201 EDO EDO . I 4 NA A 1 607 1 NA NA . J 5 O4B B 1 501 501 O4B O4B . K 2 BR B 1 502 501 BR BR . L 3 EDO B 1 503 801 EDO EDO . M 3 EDO B 1 504 901 EDO EDO . N 3 EDO B 1 505 1001 EDO EDO . O 3 EDO B 1 506 1101 EDO EDO . P 3 EDO B 1 507 1201 EDO EDO . Q 3 EDO B 1 508 1401 EDO EDO . R 3 EDO B 1 509 1501 EDO EDO . S 3 EDO B 1 510 1701 EDO EDO . T 3 EDO B 1 511 1801 EDO EDO . U 2 BR B 1 512 1 BR BR . V 6 HOH A 1 701 11 HOH HOH . V 6 HOH A 2 702 64 HOH HOH . V 6 HOH A 3 703 88 HOH HOH . V 6 HOH A 4 704 78 HOH HOH . V 6 HOH A 5 705 93 HOH HOH . V 6 HOH A 6 706 46 HOH HOH . V 6 HOH A 7 707 106 HOH HOH . V 6 HOH A 8 708 32 HOH HOH . V 6 HOH A 9 709 26 HOH HOH . V 6 HOH A 10 710 70 HOH HOH . V 6 HOH A 11 711 22 HOH HOH . V 6 HOH A 12 712 35 HOH HOH . V 6 HOH A 13 713 83 HOH HOH . V 6 HOH A 14 714 15 HOH HOH . V 6 HOH A 15 715 45 HOH HOH . V 6 HOH A 16 716 38 HOH HOH . V 6 HOH A 17 717 95 HOH HOH . V 6 HOH A 18 718 23 HOH HOH . V 6 HOH A 19 719 97 HOH HOH . V 6 HOH A 20 720 62 HOH HOH . V 6 HOH A 21 721 37 HOH HOH . V 6 HOH A 22 722 51 HOH HOH . V 6 HOH A 23 723 86 HOH HOH . V 6 HOH A 24 724 17 HOH HOH . V 6 HOH A 25 725 90 HOH HOH . V 6 HOH A 26 726 48 HOH HOH . V 6 HOH A 27 727 7 HOH HOH . V 6 HOH A 28 728 103 HOH HOH . V 6 HOH A 29 729 67 HOH HOH . V 6 HOH A 30 730 65 HOH HOH . V 6 HOH A 31 731 28 HOH HOH . V 6 HOH A 32 732 60 HOH HOH . V 6 HOH A 33 733 63 HOH HOH . V 6 HOH A 34 734 52 HOH HOH . V 6 HOH A 35 735 8 HOH HOH . V 6 HOH A 36 736 69 HOH HOH . V 6 HOH A 37 737 77 HOH HOH . V 6 HOH A 38 738 76 HOH HOH . V 6 HOH A 39 739 3 HOH HOH . V 6 HOH A 40 740 2 HOH HOH . V 6 HOH A 41 741 61 HOH HOH . V 6 HOH A 42 742 13 HOH HOH . V 6 HOH A 43 743 66 HOH HOH . W 6 HOH B 1 601 102 HOH HOH . W 6 HOH B 2 602 44 HOH HOH . W 6 HOH B 3 603 79 HOH HOH . W 6 HOH B 4 604 99 HOH HOH . W 6 HOH B 5 605 96 HOH HOH . W 6 HOH B 6 606 42 HOH HOH . W 6 HOH B 7 607 47 HOH HOH . W 6 HOH B 8 608 50 HOH HOH . W 6 HOH B 9 609 34 HOH HOH . W 6 HOH B 10 610 98 HOH HOH . W 6 HOH B 11 611 18 HOH HOH . W 6 HOH B 12 612 33 HOH HOH . W 6 HOH B 13 613 39 HOH HOH . W 6 HOH B 14 614 16 HOH HOH . W 6 HOH B 15 615 75 HOH HOH . W 6 HOH B 16 616 84 HOH HOH . W 6 HOH B 17 617 94 HOH HOH . W 6 HOH B 18 618 92 HOH HOH . W 6 HOH B 19 619 89 HOH HOH . W 6 HOH B 20 620 87 HOH HOH . W 6 HOH B 21 621 40 HOH HOH . W 6 HOH B 22 622 55 HOH HOH . W 6 HOH B 23 623 59 HOH HOH . W 6 HOH B 24 624 41 HOH HOH . W 6 HOH B 25 625 49 HOH HOH . W 6 HOH B 26 626 27 HOH HOH . W 6 HOH B 27 627 107 HOH HOH . W 6 HOH B 28 628 1 HOH HOH . W 6 HOH B 29 629 74 HOH HOH . W 6 HOH B 30 630 5 HOH HOH . W 6 HOH B 31 631 80 HOH HOH . W 6 HOH B 32 632 24 HOH HOH . W 6 HOH B 33 633 20 HOH HOH . W 6 HOH B 34 634 81 HOH HOH . W 6 HOH B 35 635 12 HOH HOH . W 6 HOH B 36 636 53 HOH HOH . W 6 HOH B 37 637 43 HOH HOH . W 6 HOH B 38 638 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . N 3 -26.725 7.776 -18.075 1 68.54 ? C1 EDO 505 B 1 HETATM 2 O O1 EDO . . . N 3 -26.552 8.415 -19.346 1 61.68 ? O1 EDO 505 B 1 HETATM 3 C C2 EDO . . . N 3 -27.322 8.619 -16.999 1 63.39 ? C2 EDO 505 B 1 HETATM 4 O O2 EDO . . . N 3 -26.942 8.221 -15.694 1 65.52 ? O2 EDO 505 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #