data_6M07 # _model_server_result.job_id f_cdRX9b8yP4DvJgkbF2Ng _model_server_result.datetime_utc '2025-03-09 02:32:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6M07 # _exptl.entry_id 6M07 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 631.606 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[(E)-3-[2-(diethylamino)ethyl-[[4-[4-(trifluoromethyl)-2-[2,2,2-tris(fluoranyl)ethoxy]phenyl]phenyl]methyl]amino]-1-oxidanyl-3-oxidanylidene-prop-1-enyl]pyrrolidine-1-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.32 _cell.angle_gamma 90 _cell.entry_id 6M07 _cell.length_a 112.687 _cell.length_b 77.857 _cell.length_c 94.698 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 220 A SER 273 1_555 C C1 BWO . A BWO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.513 ? covale ? covale2 B OG SER 220 B SER 273 1_555 D C1 BWO . B BWO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? # _chem_comp.formula 'C30 H35 F6 N3 O5' _chem_comp.formula_weight 631.606 _chem_comp.id BWO _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[(E)-3-[2-(diethylamino)ethyl-[[4-[4-(trifluoromethyl)-2-[2,2,2-tris(fluoranyl)ethoxy]phenyl]phenyl]methyl]amino]-1-oxidanyl-3-oxidanylidene-prop-1-enyl]pyrrolidine-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 BWO doub 70 n y C29 C24 BWO sing 71 n y C28 C27 BWO sing 72 n y F39 C36 BWO sing 73 n n C23 C24 BWO sing 74 n n C23 N13 BWO sing 75 n n C24 C25 BWO doub 76 n y C27 C30 BWO sing 77 n n C27 C26 BWO doub 78 n y C30 C35 BWO doub 79 n y C30 C31 BWO sing 80 n y O40 C31 BWO sing 81 n n O40 C41 BWO sing 82 n n C35 C34 BWO sing 83 n y C31 C32 BWO doub 84 n y C34 C33 BWO doub 85 n y F37 C36 BWO sing 86 n n F44 C42 BWO sing 87 n n C32 C33 BWO sing 88 n y C33 C36 BWO sing 89 n n C41 C42 BWO sing 90 n n C36 F38 BWO sing 91 n n F43 C42 BWO sing 92 n n C25 C26 BWO sing 93 n y C42 F46 BWO sing 94 n n N13 C12 BWO sing 95 n n N13 C15 BWO sing 96 n n C11 C12 BWO sing 97 n n C11 C8 BWO doub 98 e n C12 O14 BWO doub 99 n n O9 C8 BWO sing 100 n n C1 O2 BWO doub 101 n n C1 N3 BWO sing 102 n n C8 C4 BWO sing 103 n n N3 C4 BWO sing 104 n n N3 C7 BWO sing 105 n n C15 C16 BWO sing 106 n n C4 C5 BWO sing 107 n n C7 C6 BWO sing 108 n n C16 N17 BWO sing 109 n n C5 C6 BWO sing 110 n n C19 C18 BWO sing 111 n n N17 C18 BWO sing 112 n n N17 C21 BWO sing 113 n n C21 C22 BWO sing 114 n n C4 H2 BWO sing 115 n n C5 H3 BWO sing 116 n n C5 H4 BWO sing 117 n n C6 H5 BWO sing 118 n n C6 H6 BWO sing 119 n n C7 H7 BWO sing 120 n n C7 H8 BWO sing 121 n n O9 H9 BWO sing 122 n n C11 H10 BWO sing 123 n n C15 H11 BWO sing 124 n n C15 H12 BWO sing 125 n n C16 H13 BWO sing 126 n n C16 H14 BWO sing 127 n n C18 H16 BWO sing 128 n n C18 H17 BWO sing 129 n n C19 H18 BWO sing 130 n n C19 H19 BWO sing 131 n n C19 H20 BWO sing 132 n n C21 H21 BWO sing 133 n n C21 H22 BWO sing 134 n n C22 H23 BWO sing 135 n n C22 H24 BWO sing 136 n n C22 H25 BWO sing 137 n n C23 H26 BWO sing 138 n n C23 H27 BWO sing 139 n n C25 H28 BWO sing 140 n n C26 H29 BWO sing 141 n n C28 H30 BWO sing 142 n n C29 H31 BWO sing 143 n n C32 H32 BWO sing 144 n n C34 H33 BWO sing 145 n n C35 H34 BWO sing 146 n n C41 H35 BWO sing 147 n n C41 H36 BWO sing 148 n n C1 O1 BWO sing 149 n n O1 H1 BWO sing 150 n n # _atom_sites.entry_id 6M07 _atom_sites.fract_transf_matrix[1][1] 0.008874 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004199 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BWO A 1 501 501 BWO 2g2 . D 2 BWO B 1 501 501 BWO 2g2 . E 3 HOH A 1 601 29 HOH HOH . E 3 HOH A 2 602 4 HOH HOH . E 3 HOH A 3 603 23 HOH HOH . E 3 HOH A 4 604 28 HOH HOH . F 3 HOH B 1 601 15 HOH HOH . F 3 HOH B 2 602 32 HOH HOH . F 3 HOH B 3 603 24 HOH HOH . F 3 HOH B 4 604 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BWO . . . C 2 15.452 -8.393 18.215 1 59.18 ? C1 BWO 501 A 1 HETATM 2 O O2 BWO . . . C 2 15.333 -9.553 18.668 1 44.93 ? O2 BWO 501 A 1 HETATM 3 N N3 BWO . . . C 2 14.838 -7.385 18.86 1 77.02 ? N3 BWO 501 A 1 HETATM 4 C C4 BWO . . . C 2 13.389 -7.223 18.98 1 81.49 ? C4 BWO 501 A 1 HETATM 5 C C5 BWO . . . C 2 13.281 -6.765 20.422 1 87.64 ? C5 BWO 501 A 1 HETATM 6 C C6 BWO . . . C 2 14.498 -5.858 20.627 1 85.98 ? C6 BWO 501 A 1 HETATM 7 C C7 BWO . . . C 2 15.513 -6.297 19.574 1 81.69 ? C7 BWO 501 A 1 HETATM 8 C C8 BWO . . . C 2 12.786 -6.018 18.326 1 90.88 ? C8 BWO 501 A 1 HETATM 9 O O9 BWO . . . C 2 13.592 -4.963 18.157 1 96.9 ? O9 BWO 501 A 1 HETATM 10 C C11 BWO . . . C 2 11.484 -5.904 17.964 1 90.84 ? C11 BWO 501 A 1 HETATM 11 C C12 BWO . . . C 2 10.487 -6.974 18.141 1 86.68 ? C12 BWO 501 A 1 HETATM 12 N N13 BWO . . . C 2 9.189 -6.662 17.882 1 79.34 ? N13 BWO 501 A 1 HETATM 13 O O14 BWO . . . C 2 10.871 -8.078 18.525 1 89.32 ? O14 BWO 501 A 1 HETATM 14 C C15 BWO . . . C 2 8.283 -6.05 18.897 1 76.61 ? C15 BWO 501 A 1 HETATM 15 C C16 BWO . . . C 2 8.284 -6.849 20.252 1 73.46 ? C16 BWO 501 A 1 HETATM 16 N N17 BWO . . . C 2 8.054 -6.129 21.567 1 63.45 ? N17 BWO 501 A 1 HETATM 17 C C18 BWO . . . C 2 8.64 -4.741 21.722 1 65.85 ? C18 BWO 501 A 1 HETATM 18 C C19 BWO . . . C 2 10.122 -4.537 21.4 1 65.42 ? C19 BWO 501 A 1 HETATM 19 C C21 BWO . . . C 2 8.318 -7.037 22.712 1 57.57 ? C21 BWO 501 A 1 HETATM 20 C C22 BWO . . . C 2 9.376 -6.568 23.712 1 58.5 ? C22 BWO 501 A 1 HETATM 21 C C23 BWO . . . C 2 8.584 -6.933 16.56 1 75.03 ? C23 BWO 501 A 1 HETATM 22 C C24 BWO . . . C 2 7.614 -8.108 16.626 1 70.39 ? C24 BWO 501 A 1 HETATM 23 C C25 BWO . . . C 2 7.84 -9.116 17.563 1 68.22 ? C25 BWO 501 A 1 HETATM 24 C C26 BWO . . . C 2 6.982 -10.188 17.683 1 67.99 ? C26 BWO 501 A 1 HETATM 25 C C27 BWO . . . C 2 5.868 -10.287 16.872 1 66.31 ? C27 BWO 501 A 1 HETATM 26 C C28 BWO . . . C 2 5.632 -9.292 15.917 1 66.21 ? C28 BWO 501 A 1 HETATM 27 C C29 BWO . . . C 2 6.497 -8.202 15.793 1 66.77 ? C29 BWO 501 A 1 HETATM 28 C C30 BWO . . . C 2 4.974 -11.478 17.016 1 66.97 ? C30 BWO 501 A 1 HETATM 29 C C31 BWO . . . C 2 5.508 -12.786 17.081 1 68.63 ? C31 BWO 501 A 1 HETATM 30 C C32 BWO . . . C 2 4.651 -13.881 17.182 1 66.84 ? C32 BWO 501 A 1 HETATM 31 C C33 BWO . . . C 2 3.283 -13.673 17.224 1 70.05 ? C33 BWO 501 A 1 HETATM 32 C C34 BWO . . . C 2 2.749 -12.386 17.155 1 67.88 ? C34 BWO 501 A 1 HETATM 33 C C35 BWO . . . C 2 3.594 -11.285 17.049 1 65.14 ? C35 BWO 501 A 1 HETATM 34 C C36 BWO . . . C 2 2.374 -14.849 17.334 1 76.26 ? C36 BWO 501 A 1 HETATM 35 F F37 BWO . . . C 2 3.044 -15.972 17.168 1 70.38 ? F37 BWO 501 A 1 HETATM 36 F F38 BWO . . . C 2 1.849 -14.855 18.548 1 85.77 ? F38 BWO 501 A 1 HETATM 37 F F39 BWO . . . C 2 1.469 -14.722 16.371 1 76.13 ? F39 BWO 501 A 1 HETATM 38 O O40 BWO . . . C 2 6.877 -12.996 17.031 1 68.39 ? O40 BWO 501 A 1 HETATM 39 C C41 BWO . . . C 2 7.536 -14.231 17.311 1 70.61 ? C41 BWO 501 A 1 HETATM 40 C C42 BWO . . . C 2 8.971 -13.939 17.735 1 76.42 ? C42 BWO 501 A 1 HETATM 41 F F43 BWO . . . C 2 9.712 -14.994 17.388 1 74.86 ? F43 BWO 501 A 1 HETATM 42 F F44 BWO . . . C 2 9.363 -12.805 17.177 1 71.75 ? F44 BWO 501 A 1 HETATM 43 F F46 BWO . . . C 2 9.051 -13.72 19.039 1 84.29 ? F46 BWO 501 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #