data_6M08 # _model_server_result.job_id yexiarS3gZLeE4PrDqYNmA _model_server_result.datetime_utc '2024-11-15 03:19:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6M08 # _exptl.entry_id 6M08 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 533.582 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[(Z)-3-[2-(diethylamino)ethyl-[[4-[4-(trifluoromethyl)phenyl]phenyl]methyl]amino]-1-oxidanyl-3-oxidanylidene-prop-1-enyl]pyrrolidine-1-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.73 _cell.angle_gamma 90 _cell.entry_id 6M08 _cell.length_a 116.346 _cell.length_b 82.345 _cell.length_c 96.664 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M08 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,C,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 220 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 273 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C37 _struct_conn.ptnr2_label_comp_id BWL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id BWL _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.669 _struct_conn.pdbx_value_order sing # _chem_comp.formula 'C28 H34 F3 N3 O4' _chem_comp.formula_weight 533.582 _chem_comp.id BWL _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[(Z)-3-[2-(diethylamino)ethyl-[[4-[4-(trifluoromethyl)phenyl]phenyl]methyl]amino]-1-oxidanyl-3-oxidanylidene-prop-1-enyl]pyrrolidine-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F15 C14 BWL sing 70 n n C14 C11 BWL sing 71 n n C14 F18 BWL sing 72 n n C14 F17 BWL sing 73 n n C6 C7 BWL doub 74 n y C6 C5 BWL sing 75 n y C10 C11 BWL doub 76 n y C10 C9 BWL sing 77 n y C11 C12 BWL sing 78 n y C7 C2 BWL sing 79 n y C9 C8 BWL doub 80 n y C12 C13 BWL doub 81 n y C8 C13 BWL sing 82 n y C8 C5 BWL sing 83 n n C5 C4 BWL doub 84 n y C2 C1 BWL sing 85 n n C2 C3 BWL doub 86 n y C1 N19 BWL sing 87 n n C4 C3 BWL sing 88 n y O28 C27 BWL doub 89 n n C27 N19 BWL sing 90 n n C27 C29 BWL sing 91 n n N19 C20 BWL sing 92 n n C29 C30 BWL doub 93 z n C37 O38 BWL doub 94 n n C37 N36 BWL sing 95 n n C21 C20 BWL sing 96 n n C21 N22 BWL sing 97 n n C35 N36 BWL sing 98 n n C35 C34 BWL sing 99 n n N36 C32 BWL sing 100 n n C23 N22 BWL sing 101 n n C23 C24 BWL sing 102 n n C30 C32 BWL sing 103 n n C30 O31 BWL sing 104 n n N22 C25 BWL sing 105 n n C34 C33 BWL sing 106 n n C32 C33 BWL sing 107 n n C25 C26 BWL sing 108 n n C1 H1 BWL sing 109 n n C1 H2 BWL sing 110 n n C3 H3 BWL sing 111 n n C4 H4 BWL sing 112 n n C6 H5 BWL sing 113 n n C7 H6 BWL sing 114 n n C9 H7 BWL sing 115 n n C10 H8 BWL sing 116 n n C12 H9 BWL sing 117 n n C13 H10 BWL sing 118 n n C20 H11 BWL sing 119 n n C20 H12 BWL sing 120 n n C21 H13 BWL sing 121 n n C21 H14 BWL sing 122 n n C23 H16 BWL sing 123 n n C23 H17 BWL sing 124 n n C24 H18 BWL sing 125 n n C24 H19 BWL sing 126 n n C24 H20 BWL sing 127 n n C25 H21 BWL sing 128 n n C25 H22 BWL sing 129 n n C26 H23 BWL sing 130 n n C26 H24 BWL sing 131 n n C26 H25 BWL sing 132 n n C29 H26 BWL sing 133 n n O31 H27 BWL sing 134 n n C32 H28 BWL sing 135 n n C33 H29 BWL sing 136 n n C33 H30 BWL sing 137 n n C34 H31 BWL sing 138 n n C34 H32 BWL sing 139 n n C35 H33 BWL sing 140 n n C35 H34 BWL sing 141 n n C37 O1 BWL sing 142 n n O1 H15 BWL sing 143 n n # _atom_sites.entry_id 6M08 _atom_sites.fract_transf_matrix[1][1] 0.008595 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004142 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BWL B 1 501 1 BWL a2f . D 3 HOH A 1 501 71 HOH HOH . D 3 HOH A 2 502 91 HOH HOH . D 3 HOH A 3 503 14 HOH HOH . D 3 HOH A 4 504 93 HOH HOH . D 3 HOH A 5 505 19 HOH HOH . D 3 HOH A 6 506 1 HOH HOH . D 3 HOH A 7 507 2 HOH HOH . D 3 HOH A 8 508 17 HOH HOH . D 3 HOH A 9 509 27 HOH HOH . D 3 HOH A 10 510 59 HOH HOH . D 3 HOH A 11 511 32 HOH HOH . D 3 HOH A 12 512 46 HOH HOH . D 3 HOH A 13 513 16 HOH HOH . D 3 HOH A 14 514 31 HOH HOH . D 3 HOH A 15 515 73 HOH HOH . D 3 HOH A 16 516 6 HOH HOH . D 3 HOH A 17 517 81 HOH HOH . D 3 HOH A 18 518 9 HOH HOH . D 3 HOH A 19 519 60 HOH HOH . D 3 HOH A 20 520 77 HOH HOH . D 3 HOH A 21 521 80 HOH HOH . D 3 HOH A 22 522 70 HOH HOH . D 3 HOH A 23 523 83 HOH HOH . D 3 HOH A 24 524 82 HOH HOH . D 3 HOH A 25 525 18 HOH HOH . D 3 HOH A 26 526 48 HOH HOH . D 3 HOH A 27 527 72 HOH HOH . D 3 HOH A 28 528 21 HOH HOH . D 3 HOH A 29 529 92 HOH HOH . D 3 HOH A 30 530 5 HOH HOH . D 3 HOH A 31 531 86 HOH HOH . D 3 HOH A 32 532 47 HOH HOH . D 3 HOH A 33 533 36 HOH HOH . D 3 HOH A 34 534 53 HOH HOH . D 3 HOH A 35 535 37 HOH HOH . D 3 HOH A 36 536 13 HOH HOH . D 3 HOH A 37 537 61 HOH HOH . D 3 HOH A 38 538 12 HOH HOH . E 3 HOH B 1 601 40 HOH HOH . E 3 HOH B 2 602 30 HOH HOH . E 3 HOH B 3 603 38 HOH HOH . E 3 HOH B 4 604 87 HOH HOH . E 3 HOH B 5 605 55 HOH HOH . E 3 HOH B 6 606 23 HOH HOH . E 3 HOH B 7 607 64 HOH HOH . E 3 HOH B 8 608 57 HOH HOH . E 3 HOH B 9 609 7 HOH HOH . E 3 HOH B 10 610 26 HOH HOH . E 3 HOH B 11 611 66 HOH HOH . E 3 HOH B 12 612 58 HOH HOH . E 3 HOH B 13 613 8 HOH HOH . E 3 HOH B 14 614 29 HOH HOH . E 3 HOH B 15 615 15 HOH HOH . E 3 HOH B 16 616 50 HOH HOH . E 3 HOH B 17 617 52 HOH HOH . E 3 HOH B 18 618 89 HOH HOH . E 3 HOH B 19 619 54 HOH HOH . E 3 HOH B 20 620 39 HOH HOH . E 3 HOH B 21 621 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BWL . . . C 2 99.5 57.913 192.155 1 84.55 ? C1 BWL 501 B 1 HETATM 2 C C2 BWL . . . C 2 98.61 56.686 192.051 1 84.89 ? C2 BWL 501 B 1 HETATM 3 C C3 BWL . . . C 2 99.053 55.45 192.543 1 82.23 ? C3 BWL 501 B 1 HETATM 4 C C4 BWL . . . C 2 98.275 54.32 192.47 1 74.72 ? C4 BWL 501 B 1 HETATM 5 C C5 BWL . . . C 2 97.017 54.425 191.918 1 68.95 ? C5 BWL 501 B 1 HETATM 6 C C6 BWL . . . C 2 96.557 55.645 191.423 1 75.72 ? C6 BWL 501 B 1 HETATM 7 C C7 BWL . . . C 2 97.34 56.779 191.493 1 81.38 ? C7 BWL 501 B 1 HETATM 8 C C8 BWL . . . C 2 96.174 53.228 191.797 1 65.53 ? C8 BWL 501 B 1 HETATM 9 C C9 BWL . . . C 2 94.802 53.374 191.605 1 66.04 ? C9 BWL 501 B 1 HETATM 10 C C10 BWL . . . C 2 94.008 52.255 191.457 1 66.97 ? C10 BWL 501 B 1 HETATM 11 C C11 BWL . . . C 2 94.591 50.992 191.487 1 65.56 ? C11 BWL 501 B 1 HETATM 12 C C12 BWL . . . C 2 95.959 50.845 191.674 1 62.3 ? C12 BWL 501 B 1 HETATM 13 C C13 BWL . . . C 2 96.757 51.963 191.814 1 62.42 ? C13 BWL 501 B 1 HETATM 14 C C14 BWL . . . C 2 93.734 49.775 191.336 1 69.85 ? C14 BWL 501 B 1 HETATM 15 F F15 BWL . . . C 2 93.688 49.37 190.067 1 72.5 ? F15 BWL 501 B 1 HETATM 16 F F17 BWL . . . C 2 94.226 48.843 192.149 1 68.41 ? F17 BWL 501 B 1 HETATM 17 F F18 BWL . . . C 2 92.494 50.054 191.692 1 71.4 ? F18 BWL 501 B 1 HETATM 18 N N19 BWL . . . C 2 100.315 57.821 193.382 1 90.32 ? N19 BWL 501 B 1 HETATM 19 C C20 BWL . . . C 2 99.687 58.402 194.555 1 93.38 ? C20 BWL 501 B 1 HETATM 20 C C21 BWL . . . C 2 98.165 58.259 194.457 1 93.67 ? C21 BWL 501 B 1 HETATM 21 N N22 BWL . . . C 2 97.606 57.46 195.549 1 90.05 ? N22 BWL 501 B 1 HETATM 22 C C23 BWL . . . C 2 96.19 57.278 195.193 1 90.08 ? C23 BWL 501 B 1 HETATM 23 C C24 BWL . . . C 2 95.303 57.132 196.41 1 90.76 ? C24 BWL 501 B 1 HETATM 24 C C25 BWL . . . C 2 97.801 58.169 196.834 1 88.21 ? C25 BWL 501 B 1 HETATM 25 C C26 BWL . . . C 2 98.281 57.214 197.914 1 85.14 ? C26 BWL 501 B 1 HETATM 26 C C27 BWL . . . C 2 101.561 57.281 193.269 1 87.92 ? C27 BWL 501 B 1 HETATM 27 O O28 BWL . . . C 2 101.824 56.224 192.701 1 90.67 ? O28 BWL 501 B 1 HETATM 28 C C29 BWL . . . C 2 102.73 57.89 193.911 1 80.53 ? C29 BWL 501 B 1 HETATM 29 C C30 BWL . . . C 2 102.815 58.108 195.242 1 73.57 ? C30 BWL 501 B 1 HETATM 30 O O31 BWL . . . C 2 101.764 58.051 196.076 1 71.11 ? O31 BWL 501 B 1 HETATM 31 C C32 BWL . . . C 2 104.14 58.623 195.787 1 64.44 ? C32 BWL 501 B 1 HETATM 32 C C33 BWL . . . C 2 103.815 60.026 196.343 1 58.33 ? C33 BWL 501 B 1 HETATM 33 C C34 BWL . . . C 2 104.611 61.03 195.571 1 54.85 ? C34 BWL 501 B 1 HETATM 34 C C35 BWL . . . C 2 105.487 60.241 194.611 1 54.88 ? C35 BWL 501 B 1 HETATM 35 N N36 BWL . . . C 2 105.342 58.812 194.884 1 54.05 ? N36 BWL 501 B 1 HETATM 36 C C37 BWL . . . C 2 106.248 57.801 194.398 1 47.2 ? C37 BWL 501 B 1 HETATM 37 O O38 BWL . . . C 2 106.453 56.705 194.864 1 37.77 ? O38 BWL 501 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 510 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 37 #