data_6M0J # _model_server_result.job_id -a1iG0HMLojSsu11HJV3ag _model_server_result.datetime_utc '2024-10-11 15:27:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m0j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":906}' # _entry.id 6M0J # _exptl.entry_id 6M0J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M0J _cell.length_a 104.67 _cell.length_b 104.67 _cell.length_c 228.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M0J _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 115 A CYS 133 1_555 A SG CYS 123 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 A SG CYS 326 A CYS 344 1_555 A SG CYS 343 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 512 A CYS 530 1_555 A SG CYS 524 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 18 E CYS 336 1_555 B SG CYS 43 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 61 E CYS 379 1_555 B SG CYS 114 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 B SG CYS 73 E CYS 391 1_555 B SG CYS 207 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf7 B SG CYS 162 E CYS 480 1_555 B SG CYS 170 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? covale ? covale1 A ND2 ASN 35 A ASN 53 1_555 H C1 NAG . A NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 72 A ASN 90 1_555 F C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 304 A ASN 322 1_555 G C1 NAG . A NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale4 A ND2 ASN 528 A ASN 546 1_555 E C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale5 B ND2 ASN 25 E ASN 343 1_555 I C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? metalc ? metalc1 A NE2 HIS 356 A HIS 374 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc2 A NE2 HIS 360 A HIS 378 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc3 A OE1 GLU 384 A GLU 402 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6M0J _atom_sites.fract_transf_matrix[1][1] 0.009554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 901 901 ZN ZN . D 4 CL A 1 902 902 CL CL . E 5 NAG A 1 903 905 NAG NAG . F 5 NAG A 1 904 906 NAG NAG . G 5 NAG A 1 905 907 NAG NAG . H 5 NAG A 1 906 908 NAG NAG . I 5 NAG E 1 601 927 NAG NAG . J 6 HOH A 1 1001 47 HOH HOH . J 6 HOH A 2 1002 73 HOH HOH . J 6 HOH A 3 1003 15 HOH HOH . J 6 HOH A 4 1004 39 HOH HOH . J 6 HOH A 5 1005 12 HOH HOH . J 6 HOH A 6 1006 9 HOH HOH . J 6 HOH A 7 1007 17 HOH HOH . J 6 HOH A 8 1008 75 HOH HOH . J 6 HOH A 9 1009 41 HOH HOH . J 6 HOH A 10 1010 33 HOH HOH . J 6 HOH A 11 1011 74 HOH HOH . J 6 HOH A 12 1012 2 HOH HOH . J 6 HOH A 13 1013 11 HOH HOH . J 6 HOH A 14 1014 6 HOH HOH . J 6 HOH A 15 1015 70 HOH HOH . J 6 HOH A 16 1016 51 HOH HOH . J 6 HOH A 17 1017 62 HOH HOH . J 6 HOH A 18 1018 1 HOH HOH . J 6 HOH A 19 1019 8 HOH HOH . J 6 HOH A 20 1020 19 HOH HOH . J 6 HOH A 21 1021 54 HOH HOH . J 6 HOH A 22 1022 45 HOH HOH . J 6 HOH A 23 1023 32 HOH HOH . J 6 HOH A 24 1024 7 HOH HOH . J 6 HOH A 25 1025 25 HOH HOH . J 6 HOH A 26 1026 59 HOH HOH . J 6 HOH A 27 1027 18 HOH HOH . J 6 HOH A 28 1028 46 HOH HOH . J 6 HOH A 29 1029 5 HOH HOH . J 6 HOH A 30 1030 76 HOH HOH . J 6 HOH A 31 1031 56 HOH HOH . J 6 HOH A 32 1032 67 HOH HOH . J 6 HOH A 33 1033 10 HOH HOH . J 6 HOH A 34 1034 21 HOH HOH . J 6 HOH A 35 1035 52 HOH HOH . J 6 HOH A 36 1036 49 HOH HOH . J 6 HOH A 37 1037 66 HOH HOH . J 6 HOH A 38 1038 31 HOH HOH . J 6 HOH A 39 1039 69 HOH HOH . J 6 HOH A 40 1040 20 HOH HOH . J 6 HOH A 41 1041 24 HOH HOH . J 6 HOH A 42 1042 34 HOH HOH . J 6 HOH A 43 1043 23 HOH HOH . J 6 HOH A 44 1044 65 HOH HOH . J 6 HOH A 45 1045 42 HOH HOH . J 6 HOH A 46 1046 55 HOH HOH . J 6 HOH A 47 1047 57 HOH HOH . J 6 HOH A 48 1048 22 HOH HOH . J 6 HOH A 49 1049 44 HOH HOH . J 6 HOH A 50 1050 64 HOH HOH . J 6 HOH A 51 1051 3 HOH HOH . J 6 HOH A 52 1052 50 HOH HOH . J 6 HOH A 53 1053 30 HOH HOH . J 6 HOH A 54 1054 43 HOH HOH . J 6 HOH A 55 1055 28 HOH HOH . J 6 HOH A 56 1056 60 HOH HOH . J 6 HOH A 57 1057 27 HOH HOH . J 6 HOH A 58 1058 53 HOH HOH . J 6 HOH A 59 1059 14 HOH HOH . J 6 HOH A 60 1060 37 HOH HOH . J 6 HOH A 61 1061 48 HOH HOH . J 6 HOH A 62 1062 68 HOH HOH . J 6 HOH A 63 1063 78 HOH HOH . J 6 HOH A 64 1064 80 HOH HOH . J 6 HOH A 65 1065 71 HOH HOH . J 6 HOH A 66 1066 63 HOH HOH . J 6 HOH A 67 1067 61 HOH HOH . J 6 HOH A 68 1068 77 HOH HOH . J 6 HOH A 69 1069 72 HOH HOH . J 6 HOH A 70 1070 58 HOH HOH . J 6 HOH A 71 1071 79 HOH HOH . K 6 HOH E 1 701 16 HOH HOH . K 6 HOH E 2 702 13 HOH HOH . K 6 HOH E 3 703 4 HOH HOH . K 6 HOH E 4 704 35 HOH HOH . K 6 HOH E 5 705 26 HOH HOH . K 6 HOH E 6 706 36 HOH HOH . K 6 HOH E 7 707 40 HOH HOH . K 6 HOH E 8 708 38 HOH HOH . K 6 HOH E 9 709 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 5 -47.218 3.389 -6.952 1 93.87 ? C1 NAG 906 A 1 HETATM 2 C C2 NAG . . . H 5 -46.965 3.009 -5.477 1 95.8 ? C2 NAG 906 A 1 HETATM 3 C C3 NAG . . . H 5 -48.282 2.734 -4.74 1 104.67 ? C3 NAG 906 A 1 HETATM 4 C C4 NAG . . . H 5 -49.256 3.89 -4.921 1 103.4 ? C4 NAG 906 A 1 HETATM 5 C C5 NAG . . . H 5 -49.487 4.105 -6.408 1 99.45 ? C5 NAG 906 A 1 HETATM 6 C C6 NAG . . . H 5 -50.444 5.238 -6.703 1 94.63 ? C6 NAG 906 A 1 HETATM 7 C C7 NAG . . . H 5 -45.003 1.818 -4.598 1 96.86 ? C7 NAG 906 A 1 HETATM 8 C C8 NAG . . . H 5 -44.218 0.542 -4.624 1 93.39 ? C8 NAG 906 A 1 HETATM 9 N N2 NAG . . . H 5 -46.085 1.855 -5.384 1 95.12 ? N2 NAG 906 A 1 HETATM 10 O O3 NAG . . . H 5 -48.015 2.531 -3.356 1 99.61 ? O3 NAG 906 A 1 HETATM 11 O O4 NAG . . . H 5 -50.497 3.62 -4.277 1 105.54 ? O4 NAG 906 A 1 HETATM 12 O O5 NAG . . . H 5 -48.235 4.433 -7.028 1 94.13 ? O5 NAG 906 A 1 HETATM 13 O O6 NAG . . . H 5 -49.88 6.2 -7.584 1 94.61 ? O6 NAG 906 A 1 HETATM 14 O O7 NAG . . . H 5 -44.67 2.774 -3.902 1 103.84 ? O7 NAG 906 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #