data_6M0K # _model_server_result.job_id J6h-2FQrczWE-hm-1WI5Zg _model_server_result.datetime_utc '2024-11-16 10:49:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 6M0K # _exptl.entry_id 6M0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(2~{S})-3-(3-fluorophenyl)-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.69 _cell.angle_gamma 90 _cell.entry_id 6M0K _cell.length_a 98.152 _cell.length_b 81.701 _cell.length_c 51.669 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -43.165161 0 93.890953 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id C32 _struct_conn.ptnr2_label_comp_id FJC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FJC _struct_conn.ptnr2_auth_seq_id 405 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.811 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H25 F N4 O4' _chem_comp.formula_weight 464.489 _chem_comp.id FJC _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(2~{S})-3-(3-fluorophenyl)-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C05 FJC doub 92 n y C10 C09 FJC sing 93 n y C10 N11 FJC sing 94 n y N12 C13 FJC sing 95 n n N12 C02 FJC sing 96 n n C13 C22 FJC sing 97 n n C13 C14 FJC sing 98 n n C15 C21 FJC doub 99 n y C15 C14 FJC sing 100 n n C15 C16 FJC sing 101 n y C17 C16 FJC doub 102 n y C17 C18 FJC sing 103 n y C21 C19 FJC sing 104 n y C22 N23 FJC sing 105 n n C22 O34 FJC doub 106 n n C24 C25 FJC sing 107 n n C24 C32 FJC sing 108 n n C24 N23 FJC sing 109 n n C26 C25 FJC sing 110 n n C26 C27 FJC sing 111 n n C26 C30 FJC sing 112 n n C28 N29 FJC sing 113 n n C02 C03 FJC sing 114 n n C02 O01 FJC doub 115 n n C03 C04 FJC doub 116 n y C03 N11 FJC sing 117 n y C04 C05 FJC sing 118 n y C05 C06 FJC sing 119 n y C06 C07 FJC doub 120 n y C07 C08 FJC sing 121 n y C08 C09 FJC doub 122 n y C18 C19 FJC doub 123 n y C19 F20 FJC sing 124 n n C30 N29 FJC sing 125 n n C30 O31 FJC doub 126 n n C32 O33 FJC doub 127 n n N12 H1 FJC sing 128 n n C13 H2 FJC sing 129 n n C17 H3 FJC sing 130 n n C21 H4 FJC sing 131 n n C24 H5 FJC sing 132 n n C26 H6 FJC sing 133 n n C28 H7 FJC sing 134 n n C28 H8 FJC sing 135 n n C04 H10 FJC sing 136 n n C06 H11 FJC sing 137 n n C07 H12 FJC sing 138 n n C08 H13 FJC sing 139 n n C09 H14 FJC sing 140 n n C14 H15 FJC sing 141 n n C14 H16 FJC sing 142 n n C16 H17 FJC sing 143 n n C18 H18 FJC sing 144 n n C25 H19 FJC sing 145 n n C25 H20 FJC sing 146 n n C27 H21 FJC sing 147 n n C27 H22 FJC sing 148 n n C32 H24 FJC sing 149 n n N11 H25 FJC sing 150 n n N23 H26 FJC sing 151 n n N29 H27 FJC sing 152 n n C28 C27 FJC sing 153 n n # _atom_sites.entry_id 6M0K _atom_sites.fract_transf_matrix[1][1] 0.010188 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004684 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01224 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 1 DMS DMS . C 2 DMS A 1 402 2 DMS DMS . D 2 DMS A 1 403 3 DMS DMS . E 2 DMS A 1 404 4 DMS DMS . F 3 FJC A 1 405 1 FJC LIG . G 4 HOH A 1 501 220 HOH HOH . G 4 HOH A 2 502 68 HOH HOH . G 4 HOH A 3 503 151 HOH HOH . G 4 HOH A 4 504 75 HOH HOH . G 4 HOH A 5 505 163 HOH HOH . G 4 HOH A 6 506 77 HOH HOH . G 4 HOH A 7 507 309 HOH HOH . G 4 HOH A 8 508 79 HOH HOH . G 4 HOH A 9 509 111 HOH HOH . G 4 HOH A 10 510 12 HOH HOH . G 4 HOH A 11 511 129 HOH HOH . G 4 HOH A 12 512 135 HOH HOH . G 4 HOH A 13 513 298 HOH HOH . G 4 HOH A 14 514 234 HOH HOH . G 4 HOH A 15 515 209 HOH HOH . G 4 HOH A 16 516 312 HOH HOH . G 4 HOH A 17 517 98 HOH HOH . G 4 HOH A 18 518 306 HOH HOH . G 4 HOH A 19 519 28 HOH HOH . G 4 HOH A 20 520 22 HOH HOH . G 4 HOH A 21 521 76 HOH HOH . G 4 HOH A 22 522 47 HOH HOH . G 4 HOH A 23 523 179 HOH HOH . G 4 HOH A 24 524 32 HOH HOH . G 4 HOH A 25 525 100 HOH HOH . G 4 HOH A 26 526 17 HOH HOH . G 4 HOH A 27 527 103 HOH HOH . G 4 HOH A 28 528 153 HOH HOH . G 4 HOH A 29 529 37 HOH HOH . G 4 HOH A 30 530 84 HOH HOH . G 4 HOH A 31 531 168 HOH HOH . G 4 HOH A 32 532 310 HOH HOH . G 4 HOH A 33 533 146 HOH HOH . G 4 HOH A 34 534 45 HOH HOH . G 4 HOH A 35 535 236 HOH HOH . G 4 HOH A 36 536 295 HOH HOH . G 4 HOH A 37 537 59 HOH HOH . G 4 HOH A 38 538 95 HOH HOH . G 4 HOH A 39 539 19 HOH HOH . G 4 HOH A 40 540 90 HOH HOH . G 4 HOH A 41 541 161 HOH HOH . G 4 HOH A 42 542 7 HOH HOH . G 4 HOH A 43 543 6 HOH HOH . G 4 HOH A 44 544 136 HOH HOH . G 4 HOH A 45 545 53 HOH HOH . G 4 HOH A 46 546 149 HOH HOH . G 4 HOH A 47 547 97 HOH HOH . G 4 HOH A 48 548 197 HOH HOH . G 4 HOH A 49 549 36 HOH HOH . G 4 HOH A 50 550 157 HOH HOH . G 4 HOH A 51 551 91 HOH HOH . G 4 HOH A 52 552 171 HOH HOH . G 4 HOH A 53 553 249 HOH HOH . G 4 HOH A 54 554 31 HOH HOH . G 4 HOH A 55 555 63 HOH HOH . G 4 HOH A 56 556 60 HOH HOH . G 4 HOH A 57 557 30 HOH HOH . G 4 HOH A 58 558 82 HOH HOH . G 4 HOH A 59 559 61 HOH HOH . G 4 HOH A 60 560 121 HOH HOH . G 4 HOH A 61 561 152 HOH HOH . G 4 HOH A 62 562 184 HOH HOH . G 4 HOH A 63 563 2 HOH HOH . G 4 HOH A 64 564 101 HOH HOH . G 4 HOH A 65 565 158 HOH HOH . G 4 HOH A 66 566 69 HOH HOH . G 4 HOH A 67 567 3 HOH HOH . G 4 HOH A 68 568 105 HOH HOH . G 4 HOH A 69 569 1 HOH HOH . G 4 HOH A 70 570 25 HOH HOH . G 4 HOH A 71 571 35 HOH HOH . G 4 HOH A 72 572 33 HOH HOH . G 4 HOH A 73 573 78 HOH HOH . G 4 HOH A 74 574 52 HOH HOH . G 4 HOH A 75 575 303 HOH HOH . G 4 HOH A 76 576 176 HOH HOH . G 4 HOH A 77 577 122 HOH HOH . G 4 HOH A 78 578 62 HOH HOH . G 4 HOH A 79 579 80 HOH HOH . G 4 HOH A 80 580 42 HOH HOH . G 4 HOH A 81 581 14 HOH HOH . G 4 HOH A 82 582 81 HOH HOH . G 4 HOH A 83 583 154 HOH HOH . G 4 HOH A 84 584 26 HOH HOH . G 4 HOH A 85 585 271 HOH HOH . G 4 HOH A 86 586 302 HOH HOH . G 4 HOH A 87 587 311 HOH HOH . G 4 HOH A 88 588 18 HOH HOH . G 4 HOH A 89 589 74 HOH HOH . G 4 HOH A 90 590 20 HOH HOH . G 4 HOH A 91 591 51 HOH HOH . G 4 HOH A 92 592 5 HOH HOH . G 4 HOH A 93 593 92 HOH HOH . G 4 HOH A 94 594 173 HOH HOH . G 4 HOH A 95 595 292 HOH HOH . G 4 HOH A 96 596 10 HOH HOH . G 4 HOH A 97 597 15 HOH HOH . G 4 HOH A 98 598 286 HOH HOH . G 4 HOH A 99 599 23 HOH HOH . G 4 HOH A 100 600 4 HOH HOH . G 4 HOH A 101 601 8 HOH HOH . G 4 HOH A 102 602 93 HOH HOH . G 4 HOH A 103 603 307 HOH HOH . G 4 HOH A 104 604 38 HOH HOH . G 4 HOH A 105 605 21 HOH HOH . G 4 HOH A 106 606 99 HOH HOH . G 4 HOH A 107 607 88 HOH HOH . G 4 HOH A 108 608 299 HOH HOH . G 4 HOH A 109 609 72 HOH HOH . G 4 HOH A 110 610 48 HOH HOH . G 4 HOH A 111 611 126 HOH HOH . G 4 HOH A 112 612 300 HOH HOH . G 4 HOH A 113 613 113 HOH HOH . G 4 HOH A 114 614 16 HOH HOH . G 4 HOH A 115 615 64 HOH HOH . G 4 HOH A 116 616 227 HOH HOH . G 4 HOH A 117 617 142 HOH HOH . G 4 HOH A 118 618 128 HOH HOH . G 4 HOH A 119 619 221 HOH HOH . G 4 HOH A 120 620 34 HOH HOH . G 4 HOH A 121 621 139 HOH HOH . G 4 HOH A 122 622 104 HOH HOH . G 4 HOH A 123 623 290 HOH HOH . G 4 HOH A 124 624 9 HOH HOH . G 4 HOH A 125 625 169 HOH HOH . G 4 HOH A 126 626 215 HOH HOH . G 4 HOH A 127 627 287 HOH HOH . G 4 HOH A 128 628 297 HOH HOH . G 4 HOH A 129 629 11 HOH HOH . G 4 HOH A 130 630 109 HOH HOH . G 4 HOH A 131 631 124 HOH HOH . G 4 HOH A 132 632 193 HOH HOH . G 4 HOH A 133 633 238 HOH HOH . G 4 HOH A 134 634 13 HOH HOH . G 4 HOH A 135 635 133 HOH HOH . G 4 HOH A 136 636 119 HOH HOH . G 4 HOH A 137 637 145 HOH HOH . G 4 HOH A 138 638 125 HOH HOH . G 4 HOH A 139 639 116 HOH HOH . G 4 HOH A 140 640 270 HOH HOH . G 4 HOH A 141 641 195 HOH HOH . G 4 HOH A 142 642 211 HOH HOH . G 4 HOH A 143 643 296 HOH HOH . G 4 HOH A 144 644 304 HOH HOH . G 4 HOH A 145 645 110 HOH HOH . G 4 HOH A 146 646 144 HOH HOH . G 4 HOH A 147 647 114 HOH HOH . G 4 HOH A 148 648 156 HOH HOH . G 4 HOH A 149 649 141 HOH HOH . G 4 HOH A 150 650 189 HOH HOH . G 4 HOH A 151 651 191 HOH HOH . G 4 HOH A 152 652 143 HOH HOH . G 4 HOH A 153 653 308 HOH HOH . G 4 HOH A 154 654 194 HOH HOH . G 4 HOH A 155 655 185 HOH HOH . G 4 HOH A 156 656 301 HOH HOH . G 4 HOH A 157 657 83 HOH HOH . G 4 HOH A 158 658 182 HOH HOH . G 4 HOH A 159 659 117 HOH HOH . G 4 HOH A 160 660 140 HOH HOH . G 4 HOH A 161 661 223 HOH HOH . G 4 HOH A 162 662 40 HOH HOH . G 4 HOH A 163 663 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 FJC . . . F 3 -11.806 11.065 69.104 1 35.78 ? C02 FJC 405 A 1 HETATM 2 C C07 FJC . . . F 3 -9.211 5.938 71.494 1 58.38 ? C07 FJC 405 A 1 HETATM 3 C C08 FJC . . . F 3 -9.991 5.316 70.508 1 57.47 ? C08 FJC 405 A 1 HETATM 4 C C09 FJC . . . F 3 -10.798 6.084 69.663 1 54.87 ? C09 FJC 405 A 1 HETATM 5 C C10 FJC . . . F 3 -10.821 7.496 69.809 1 52.74 ? C10 FJC 405 A 1 HETATM 6 C C05 FJC . . . F 3 -10.059 8.103 70.773 1 53.69 ? C05 FJC 405 A 1 HETATM 7 C C06 FJC . . . F 3 -9.236 7.32 71.637 1 56.77 ? C06 FJC 405 A 1 HETATM 8 C C04 FJC . . . F 3 -10.304 9.503 70.655 1 50.23 ? C04 FJC 405 A 1 HETATM 9 C C03 FJC . . . F 3 -11.214 9.678 69.601 1 44.13 ? C03 FJC 405 A 1 HETATM 10 N N11 FJC . . . F 3 -11.517 8.48 69.114 1 47.74 ? N11 FJC 405 A 1 HETATM 11 O O01 FJC . . . F 3 -12.534 11.126 68.184 1 26.9 ? O01 FJC 405 A 1 HETATM 12 N N12 FJC . . . F 3 -11.434 12.309 69.849 1 34.88 ? N12 FJC 405 A 1 HETATM 13 C C13 FJC . . . F 3 -11.996 13.609 69.429 1 31.8 ? C13 FJC 405 A 1 HETATM 14 C C22 FJC . . . F 3 -11.295 14.168 68.205 1 34.2 ? C22 FJC 405 A 1 HETATM 15 O O34 FJC . . . F 3 -10.12 14.272 68.159 1 39.19 ? O34 FJC 405 A 1 HETATM 16 C C14 FJC . . . F 3 -11.932 14.534 70.63 1 36.7 ? C14 FJC 405 A 1 HETATM 17 C C15 FJC . . . F 3 -12.743 13.823 71.716 1 48.58 ? C15 FJC 405 A 1 HETATM 18 C C21 FJC . . . F 3 -12.111 13.078 72.686 1 56.5 ? C21 FJC 405 A 1 HETATM 19 C C16 FJC . . . F 3 -14.128 13.899 71.689 1 53.57 ? C16 FJC 405 A 1 HETATM 20 C C19 FJC . . . F 3 -12.862 12.426 73.65 1 61.4 ? C19 FJC 405 A 1 HETATM 21 C C18 FJC . . . F 3 -14.245 12.512 73.628 1 60.08 ? C18 FJC 405 A 1 HETATM 22 C C17 FJC . . . F 3 -14.878 13.247 72.653 1 57.62 ? C17 FJC 405 A 1 HETATM 23 F F20 FJC . . . F 3 -12.244 11.701 74.622 1 66.04 ? F20 FJC 405 A 1 HETATM 24 O O31 FJC . . . F 3 -13.479 11.88 63.255 1 26.24 ? O31 FJC 405 A 1 HETATM 25 C C30 FJC . . . F 3 -12.376 11.805 63.628 1 26.34 ? C30 FJC 405 A 1 HETATM 26 N N29 FJC . . . F 3 -11.273 10.871 63.09 1 26.66 ? N29 FJC 405 A 1 HETATM 27 C C28 FJC . . . F 3 -10.24 11.114 63.784 1 29.46 ? C28 FJC 405 A 1 HETATM 28 C C27 FJC . . . F 3 -10.512 12.579 64.62 1 28.74 ? C27 FJC 405 A 1 HETATM 29 C C26 FJC . . . F 3 -11.694 12.654 64.814 1 25.7 ? C26 FJC 405 A 1 HETATM 30 C C25 FJC . . . F 3 -12.161 14.254 64.704 1 26.71 ? C25 FJC 405 A 1 HETATM 31 C C24 FJC . . . F 3 -11.599 15.107 65.863 1 29.23 ? C24 FJC 405 A 1 HETATM 32 N N23 FJC . . . F 3 -12.128 14.556 67.088 1 27.42 ? N23 FJC 405 A 1 HETATM 33 C C32 FJC . . . F 3 -11.996 16.549 65.676 1 29.09 ? C32 FJC 405 A 1 HETATM 34 O O33 FJC . . . F 3 -11.504 17.154 64.791 1 28.28 ? O33 FJC 405 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 34 #