data_6M11 # _model_server_result.job_id EMKlQPkXtkXGgYNu9abo2g _model_server_result.datetime_utc '2024-10-12 06:23:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 6M11 # _exptl.entry_id 6M11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.474 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M11 _cell.length_a 59.24 _cell.length_b 111 _cell.length_c 262.67 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C22 H27 F N4 O2' _chem_comp.formula_weight 398.474 _chem_comp.id B49 _chem_comp.mon_nstd_flag . _chem_comp.name 'N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carbo xamide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SUNITINIB # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C14 B49 sing 183 n n C4 H4 B49 sing 184 n n C4 H4A B49 sing 185 n n C4 H4B B49 sing 186 n n C5 C6 B49 doub 187 n y C5 C15 B49 sing 188 n y C5 H5 B49 sing 189 n n C6 C16 B49 sing 190 n y C6 H6 B49 sing 191 n n C7 C15 B49 doub 192 n y C7 C17 B49 sing 193 n y C7 H7 B49 sing 194 n n C13 C3 B49 sing 195 n n C13 C18 B49 doub 196 n y C13 C19 B49 sing 197 n y C15 F29 B49 sing 198 n n C17 C20 B49 sing 199 n n C17 C16 B49 doub 200 n y C20 C21 B49 sing 201 n n C20 C12 B49 doub 202 z n C21 N24 B49 sing 203 n n C21 O27 B49 doub 204 n n C22 C19 B49 sing 205 n n C22 N25 B49 sing 206 n n C22 O28 B49 doub 207 n n C3 H3 B49 sing 208 n n C3 H3A B49 sing 209 n n C3 H3B B49 sing 210 n n C12 C18 B49 sing 211 n n C12 H12 B49 sing 212 n n C14 C19 B49 doub 213 n y C14 N23 B49 sing 214 n y C16 N24 B49 sing 215 n n C18 N23 B49 sing 216 n y N23 HN23 B49 sing 217 n n N24 HN24 B49 sing 218 n n N25 HN25 B49 sing 219 n n N25 C37 B49 sing 220 n n C37 C38 B49 sing 221 n n C38 N4 B49 sing 222 n n N4 C39 B49 sing 223 n n N4 C40 B49 sing 224 n n C40 C41 B49 sing 225 n n C39 C42 B49 sing 226 n n C37 H14 B49 sing 227 n n C37 H15 B49 sing 228 n n C38 H16 B49 sing 229 n n C38 H17 B49 sing 230 n n C39 H18 B49 sing 231 n n C39 H19 B49 sing 232 n n C40 H20 B49 sing 233 n n C40 H21 B49 sing 234 n n C41 H22 B49 sing 235 n n C41 H23 B49 sing 236 n n C41 H24 B49 sing 237 n n C42 H25 B49 sing 238 n n C42 H26 B49 sing 239 n n C42 H27 B49 sing 240 n n # _atom_sites.entry_id 6M11 _atom_sites.fract_transf_matrix[1][1] 0.01688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 25A a 1 1000 1000 25A 25A . D 3 B49 a 1 1001 1001 B49 B49 . E 2 25A b 1 801 1000 25A 25A . F 3 B49 b 1 802 1001 B49 B49 . G 4 PO4 b 1 803 1 PO4 PO4 . H 5 HOH a 1 1101 1 HOH HOH . H 5 HOH a 2 1102 99 HOH HOH . H 5 HOH a 3 1103 374 HOH HOH . H 5 HOH a 4 1104 26 HOH HOH . H 5 HOH a 5 1105 32 HOH HOH . H 5 HOH a 6 1106 23 HOH HOH . H 5 HOH a 7 1107 13 HOH HOH . H 5 HOH a 8 1108 61 HOH HOH . H 5 HOH a 9 1109 21 HOH HOH . H 5 HOH a 10 1110 94 HOH HOH . H 5 HOH a 11 1111 55 HOH HOH . H 5 HOH a 12 1112 179 HOH HOH . H 5 HOH a 13 1113 11 HOH HOH . H 5 HOH a 14 1114 42 HOH HOH . H 5 HOH a 15 1115 67 HOH HOH . H 5 HOH a 16 1116 57 HOH HOH . H 5 HOH a 17 1117 104 HOH HOH . H 5 HOH a 18 1118 4 HOH HOH . H 5 HOH a 19 1119 20 HOH HOH . H 5 HOH a 20 1120 314 HOH HOH . H 5 HOH a 21 1121 111 HOH HOH . H 5 HOH a 22 1122 27 HOH HOH . H 5 HOH a 23 1123 8 HOH HOH . H 5 HOH a 24 1124 1 HOH HOH . H 5 HOH a 25 1125 294 HOH HOH . H 5 HOH a 26 1126 193 HOH HOH . H 5 HOH a 27 1127 376 HOH HOH . H 5 HOH a 28 1128 69 HOH HOH . H 5 HOH a 29 1129 87 HOH HOH . H 5 HOH a 30 1130 107 HOH HOH . H 5 HOH a 31 1131 229 HOH HOH . H 5 HOH a 32 1132 159 HOH HOH . H 5 HOH a 33 1133 434 HOH HOH . H 5 HOH a 34 1134 42 HOH HOH . H 5 HOH a 35 1135 5 HOH HOH . H 5 HOH a 36 1136 195 HOH HOH . H 5 HOH a 37 1137 53 HOH HOH . H 5 HOH a 38 1138 43 HOH HOH . H 5 HOH a 39 1139 180 HOH HOH . H 5 HOH a 40 1140 376 HOH HOH . H 5 HOH a 41 1141 19 HOH HOH . H 5 HOH a 42 1142 160 HOH HOH . H 5 HOH a 43 1143 36 HOH HOH . H 5 HOH a 44 1144 93 HOH HOH . H 5 HOH a 45 1145 134 HOH HOH . H 5 HOH a 46 1146 50 HOH HOH . H 5 HOH a 47 1147 128 HOH HOH . H 5 HOH a 48 1148 54 HOH HOH . H 5 HOH a 49 1149 96 HOH HOH . H 5 HOH a 50 1150 47 HOH HOH . H 5 HOH a 51 1151 33 HOH HOH . H 5 HOH a 52 1152 325 HOH HOH . H 5 HOH a 53 1153 550 HOH HOH . H 5 HOH a 54 1154 36 HOH HOH . H 5 HOH a 55 1155 74 HOH HOH . H 5 HOH a 56 1156 28 HOH HOH . H 5 HOH a 57 1157 321 HOH HOH . H 5 HOH a 58 1158 123 HOH HOH . H 5 HOH a 59 1159 56 HOH HOH . H 5 HOH a 60 1160 217 HOH HOH . H 5 HOH a 61 1161 212 HOH HOH . H 5 HOH a 62 1162 24 HOH HOH . H 5 HOH a 63 1163 532 HOH HOH . H 5 HOH a 64 1164 337 HOH HOH . H 5 HOH a 65 1165 96 HOH HOH . H 5 HOH a 66 1166 14 HOH HOH . H 5 HOH a 67 1167 319 HOH HOH . H 5 HOH a 68 1168 18 HOH HOH . H 5 HOH a 69 1169 522 HOH HOH . H 5 HOH a 70 1170 78 HOH HOH . H 5 HOH a 71 1171 496 HOH HOH . H 5 HOH a 72 1172 549 HOH HOH . H 5 HOH a 73 1173 512 HOH HOH . H 5 HOH a 74 1174 329 HOH HOH . H 5 HOH a 75 1175 489 HOH HOH . H 5 HOH a 76 1176 506 HOH HOH . H 5 HOH a 77 1177 508 HOH HOH . H 5 HOH a 78 1178 552 HOH HOH . H 5 HOH a 79 1179 14 HOH HOH . H 5 HOH a 80 1180 553 HOH HOH . H 5 HOH a 81 1181 485 HOH HOH . I 5 HOH b 1 901 125 HOH HOH . I 5 HOH b 2 902 6 HOH HOH . I 5 HOH b 3 903 27 HOH HOH . I 5 HOH b 4 904 124 HOH HOH . I 5 HOH b 5 905 5 HOH HOH . I 5 HOH b 6 906 355 HOH HOH . I 5 HOH b 7 907 10 HOH HOH . I 5 HOH b 8 908 209 HOH HOH . I 5 HOH b 9 909 48 HOH HOH . I 5 HOH b 10 910 78 HOH HOH . I 5 HOH b 11 911 153 HOH HOH . I 5 HOH b 12 912 462 HOH HOH . I 5 HOH b 13 913 43 HOH HOH . I 5 HOH b 14 914 12 HOH HOH . I 5 HOH b 15 915 113 HOH HOH . I 5 HOH b 16 916 39 HOH HOH . I 5 HOH b 17 917 262 HOH HOH . I 5 HOH b 18 918 86 HOH HOH . I 5 HOH b 19 919 66 HOH HOH . I 5 HOH b 20 920 92 HOH HOH . I 5 HOH b 21 921 81 HOH HOH . I 5 HOH b 22 922 144 HOH HOH . I 5 HOH b 23 923 246 HOH HOH . I 5 HOH b 24 924 77 HOH HOH . I 5 HOH b 25 925 163 HOH HOH . I 5 HOH b 26 926 310 HOH HOH . I 5 HOH b 27 927 96 HOH HOH . I 5 HOH b 28 928 49 HOH HOH . I 5 HOH b 29 929 33 HOH HOH . I 5 HOH b 30 930 54 HOH HOH . I 5 HOH b 31 931 215 HOH HOH . I 5 HOH b 32 932 109 HOH HOH . I 5 HOH b 33 933 22 HOH HOH . I 5 HOH b 34 934 264 HOH HOH . I 5 HOH b 35 935 92 HOH HOH . I 5 HOH b 36 936 160 HOH HOH . I 5 HOH b 37 937 83 HOH HOH . I 5 HOH b 38 938 73 HOH HOH . I 5 HOH b 39 939 11 HOH HOH . I 5 HOH b 40 940 29 HOH HOH . I 5 HOH b 41 941 35 HOH HOH . I 5 HOH b 42 942 116 HOH HOH . I 5 HOH b 43 943 113 HOH HOH . I 5 HOH b 44 944 496 HOH HOH . I 5 HOH b 45 945 15 HOH HOH . I 5 HOH b 46 946 115 HOH HOH . I 5 HOH b 47 947 155 HOH HOH . I 5 HOH b 48 948 31 HOH HOH . I 5 HOH b 49 949 198 HOH HOH . I 5 HOH b 50 950 283 HOH HOH . I 5 HOH b 51 951 7 HOH HOH . I 5 HOH b 52 952 260 HOH HOH . I 5 HOH b 53 953 58 HOH HOH . I 5 HOH b 54 954 83 HOH HOH . I 5 HOH b 55 955 60 HOH HOH . I 5 HOH b 56 956 164 HOH HOH . I 5 HOH b 57 957 117 HOH HOH . I 5 HOH b 58 958 16 HOH HOH . I 5 HOH b 59 959 21 HOH HOH . I 5 HOH b 60 960 38 HOH HOH . I 5 HOH b 61 961 79 HOH HOH . I 5 HOH b 62 962 82 HOH HOH . I 5 HOH b 63 963 110 HOH HOH . I 5 HOH b 64 964 166 HOH HOH . I 5 HOH b 65 965 253 HOH HOH . I 5 HOH b 66 966 400 HOH HOH . I 5 HOH b 67 967 505 HOH HOH . I 5 HOH b 68 968 536 HOH HOH . I 5 HOH b 69 969 197 HOH HOH . I 5 HOH b 70 970 551 HOH HOH . I 5 HOH b 71 971 548 HOH HOH . I 5 HOH b 72 972 520 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 B49 . . . D 3 15.067 -46.946 -51.407 1 78.95 ? C4 B49 1001 a 1 HETATM 2 C C5 B49 . . . D 3 10.644 -39.183 -47.573 1 68.36 ? C5 B49 1001 a 1 HETATM 3 C C6 B49 . . . D 3 11.945 -39.295 -48.085 1 70.43 ? C6 B49 1001 a 1 HETATM 4 C C7 B49 . . . D 3 10.097 -41.542 -48.039 1 69.29 ? C7 B49 1001 a 1 HETATM 5 C C13 B49 . . . D 3 11.421 -46.664 -50.077 1 76.09 ? C13 B49 1001 a 1 HETATM 6 C C15 B49 . . . D 3 9.747 -40.263 -47.545 1 72 ? C15 B49 1001 a 1 HETATM 7 C C17 B49 . . . D 3 11.377 -41.671 -48.587 1 66.93 ? C17 B49 1001 a 1 HETATM 8 C C20 B49 . . . D 3 12.121 -42.807 -49.164 1 65.59 ? C20 B49 1001 a 1 HETATM 9 C C21 B49 . . . D 3 13.439 -42.209 -49.562 1 80.53 ? C21 B49 1001 a 1 HETATM 10 C C22 B49 . . . D 3 12.369 -48.887 -51.136 1 99.11 ? C22 B49 1001 a 1 HETATM 11 C C3 B49 . . . D 3 10.008 -47.073 -49.737 1 77.08 ? C3 B49 1001 a 1 HETATM 12 C C12 B49 . . . D 3 11.475 -44.136 -49.305 1 63.91 ? C12 B49 1001 a 1 HETATM 13 C C14 B49 . . . D 3 13.716 -46.573 -50.83 1 75.12 ? C14 B49 1001 a 1 HETATM 14 C C16 B49 . . . D 3 12.362 -40.511 -48.635 1 70.72 ? C16 B49 1001 a 1 HETATM 15 C C18 B49 . . . D 3 12.098 -45.348 -49.9 1 70.28 ? C18 B49 1001 a 1 HETATM 16 C C19 B49 . . . D 3 12.511 -47.464 -50.69 1 79.96 ? C19 B49 1001 a 1 HETATM 17 N N23 B49 . . . D 3 13.394 -45.344 -50.33 1 69.96 ? N23 B49 1001 a 1 HETATM 18 N N24 B49 . . . D 3 13.539 -40.889 -49.224 1 74.85 ? N24 B49 1001 a 1 HETATM 19 N N25 B49 . . . D 3 12.03 -49.864 -50.275 1 114.45 ? N25 B49 1001 a 1 HETATM 20 O O27 B49 . . . D 3 14.409 -42.86 -50.138 1 84.76 ? O27 B49 1001 a 1 HETATM 21 O O28 B49 . . . D 3 12.542 -49.093 -52.337 1 104.64 ? O28 B49 1001 a 1 HETATM 22 F F29 B49 . . . D 3 8.531 -40.045 -47.001 1 87.62 ? F29 B49 1001 a 1 HETATM 23 C C37 B49 . . . D 3 11.12 -50.954 -50.629 1 125.58 ? C37 B49 1001 a 1 HETATM 24 C C38 B49 . . . D 3 11.801 -52.139 -51.328 1 136.19 ? C38 B49 1001 a 1 HETATM 25 N N4 B49 . . . D 3 11.644 -52.086 -52.8 1 143.21 ? N4 B49 1001 a 1 HETATM 26 C C39 B49 . . . D 3 12.899 -52.53 -53.445 1 135.43 ? C39 B49 1001 a 1 HETATM 27 C C40 B49 . . . D 3 10.534 -52.966 -53.22 1 146.6 ? C40 B49 1001 a 1 HETATM 28 C C41 B49 . . . D 3 9.407 -52.149 -53.816 1 141.54 ? C41 B49 1001 a 1 HETATM 29 C C42 B49 . . . D 3 13.308 -51.644 -54.61 1 127.53 ? C42 B49 1001 a 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 438 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #