data_6M17 # _model_server_result.job_id LY-dInc5JPSkx1JI-eGHHA _model_server_result.datetime_utc '2024-10-24 04:22:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":902}' # _entry.id 6M17 # _exptl.entry_id 6M17 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 65.409 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M17 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 CA N N ? 8 JA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 5 3 2 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 G 1 NAG A 703 NAG 4 n G NAG 2 G 2 NAG A 704 NAG 4 n H NAG 1 H 1 NAG B 901 NAG 4 n H NAG 2 H 2 NAG B 902 NAG 4 n I NAG 1 I 1 NAG B 903 NAG 4 n I NAG 2 I 2 NAG B 904 NAG 4 n J NAG 1 J 1 NAG B 905 NAG 4 n J NAG 2 J 2 NAG B 906 NAG 4 n K NAG 1 K 1 NAG B 908 NAG 4 n K NAG 2 K 2 NAG B 909 NAG 4 n L NAG 1 L 1 NAG B 910 NAG 4 n L NAG 2 L 2 NAG B 911 NAG 4 n M NAG 1 M 1 NAG B 912 NAG 4 n M NAG 2 M 2 NAG B 913 NAG 5 n N NAG 1 N 1 NAG E 1401 NAG 5 n N NAG 2 N 2 NAG E 1402 NAG 5 n N NAG 3 N 3 NAG E 1403 NAG 4 n O NAG 1 O 1 NAG C 703 NAG 4 n O NAG 2 O 2 NAG C 704 NAG 4 n P NAG 1 P 1 NAG D 901 NAG 4 n P NAG 2 P 2 NAG D 902 NAG 4 n Q NAG 1 Q 1 NAG D 903 NAG 4 n Q NAG 2 Q 2 NAG D 904 NAG 4 n R NAG 1 R 1 NAG D 905 NAG 4 n R NAG 2 R 2 NAG D 906 NAG 4 n S NAG 1 S 1 NAG D 908 NAG 4 n S NAG 2 S 2 NAG D 909 NAG 4 n T NAG 1 T 1 NAG D 910 NAG 4 n T NAG 2 T 2 NAG D 911 NAG 4 n U NAG 1 U 1 NAG D 912 NAG 4 n U NAG 2 U 2 NAG D 913 NAG 5 n V NAG 1 V 1 NAG F 1401 NAG 5 n V NAG 2 V 2 NAG F 1402 NAG 5 n V NAG 3 V 3 NAG F 1403 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 173 A CYS 153 1_555 A SG CYS 186 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 356 A CYS 336 1_555 A SG CYS 403 A CYS 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 142 B CYS 133 1_555 B SG CYS 150 B CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? disulf ? disulf4 B SG CYS 353 B CYS 344 1_555 B SG CYS 370 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? disulf ? disulf5 B SG CYS 539 B CYS 530 1_555 B SG CYS 551 B CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 C SG CYS 18 E CYS 336 1_555 C SG CYS 43 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? disulf ? disulf7 C SG CYS 61 E CYS 379 1_555 C SG CYS 114 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 C SG CYS 162 E CYS 480 1_555 C SG CYS 170 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? disulf ? disulf9 D SG CYS 173 C CYS 153 1_555 D SG CYS 186 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 D SG CYS 356 C CYS 336 1_555 D SG CYS 403 C CYS 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 E SG CYS 142 D CYS 133 1_555 E SG CYS 150 D CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? disulf ? disulf12 E SG CYS 353 D CYS 344 1_555 E SG CYS 370 D CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? disulf ? disulf13 E SG CYS 539 D CYS 530 1_555 E SG CYS 551 D CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 F SG CYS 18 F CYS 336 1_555 F SG CYS 43 F CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? disulf ? disulf15 F SG CYS 61 F CYS 379 1_555 F SG CYS 114 F CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf16 F SG CYS 162 F CYS 480 1_555 F SG CYS 170 F CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? covale ? covale1 A ND2 ASN 178 A ASN 158 1_555 W C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale2 A ND2 ASN 202 A ASN 182 1_555 X C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 A ND2 ASN 278 A ASN 258 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 A ND2 ASN 374 A ASN 354 1_555 Y C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 A ND2 ASN 388 A ASN 368 1_555 Z C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 B ND2 ASN 62 B ASN 53 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 B ND2 ASN 99 B ASN 90 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale8 B ND2 ASN 112 B ASN 103 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale9 B ND2 ASN 331 B ASN 322 1_555 BA C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale10 B ND2 ASN 441 B ASN 432 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 B ND2 ASN 555 B ASN 546 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 B ND2 ASN 699 B ASN 690 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale13 C ND2 ASN 25 E ASN 343 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale14 D ND2 ASN 178 C ASN 158 1_555 DA C1 NAG . C NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale15 D ND2 ASN 202 C ASN 182 1_555 EA C1 NAG . C NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale16 D ND2 ASN 278 C ASN 258 1_555 O C1 NAG . O NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale17 D ND2 ASN 374 C ASN 354 1_555 FA C1 NAG . C NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale18 D ND2 ASN 388 C ASN 368 1_555 GA C1 NAG . C NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale19 E ND2 ASN 62 D ASN 53 1_555 P C1 NAG . P NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale20 E ND2 ASN 99 D ASN 90 1_555 Q C1 NAG . Q NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale21 E ND2 ASN 112 D ASN 103 1_555 R C1 NAG . R NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale22 E ND2 ASN 331 D ASN 322 1_555 IA C1 NAG . D NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale23 E ND2 ASN 441 D ASN 432 1_555 S C1 NAG . S NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale24 E ND2 ASN 555 D ASN 546 1_555 T C1 NAG . T NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale25 E ND2 ASN 699 D ASN 690 1_555 U C1 NAG . U NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale26 F ND2 ASN 25 F ASN 343 1_555 V C1 NAG . V NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale27 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale28 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale29 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale30 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.149 ? covale ? covale31 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale32 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale33 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale34 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale35 N O4 NAG . N NAG 2 1_555 N C1 NAG . N NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale36 O O4 NAG . O NAG 1 1_555 O C1 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale37 P O4 NAG . P NAG 1 1_555 P C1 NAG . P NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale38 Q O4 NAG . Q NAG 1 1_555 Q C1 NAG . Q NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale39 R O4 NAG . R NAG 1 1_555 R C1 NAG . R NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.149 ? covale ? covale40 S O4 NAG . S NAG 1 1_555 S C1 NAG . S NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale41 T O4 NAG . T NAG 1 1_555 T C1 NAG . T NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale42 U O4 NAG . U NAG 1 1_555 U C1 NAG . U NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale43 V O4 NAG . V NAG 1 1_555 V C1 NAG . V NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale44 V O4 NAG . V NAG 2 1_555 V C1 NAG . V NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? metalc ? metalc1 B NE2 HIS 383 B HIS 374 1_555 CA ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc2 B OE2 GLU 411 B GLU 402 1_555 CA ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc3 E NE2 HIS 383 D HIS 374 1_555 JA ZN ZN . D ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc4 E OE2 GLU 411 D GLU 402 1_555 JA ZN ZN . D ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6M17 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 6 NAG A 1 701 701 NAG NAG . X 6 NAG A 1 702 702 NAG NAG . Y 6 NAG A 1 703 705 NAG NAG . Z 6 NAG A 1 704 706 NAG NAG . AA 7 LEU A 1 705 801 LEU LEU . BA 6 NAG B 1 901 907 NAG NAG . CA 8 ZN B 1 902 1101 ZN ZN . DA 6 NAG C 1 701 701 NAG NAG . EA 6 NAG C 1 702 702 NAG NAG . FA 6 NAG C 1 703 705 NAG NAG . GA 6 NAG C 1 704 706 NAG NAG . HA 7 LEU C 1 705 801 LEU LEU . IA 6 NAG D 1 901 907 NAG NAG . JA 8 ZN D 1 902 1101 ZN ZN . KA 9 HOH B 1 1001 1002 HOH HOH . KA 9 HOH B 2 1002 1003 HOH HOH . KA 9 HOH B 3 1003 1001 HOH HOH . KA 9 HOH B 4 1004 1004 HOH HOH . LA 9 HOH D 1 1001 1002 HOH HOH . LA 9 HOH D 2 1002 1003 HOH HOH . LA 9 HOH D 3 1003 1001 HOH HOH . LA 9 HOH D 4 1004 1004 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id JA _atom_site.label_entity_id 8 _atom_site.Cartn_x 162.38 _atom_site.Cartn_y 187.844 _atom_site.Cartn_z 233.337 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 111.99 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 902 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 1 #