data_6M1B # _model_server_result.job_id YlPdC_CA32VaMpQUpWYKqw _model_server_result.datetime_utc '2024-12-22 01:52:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 6M1B # _exptl.entry_id 6M1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.68 _cell.angle_gamma 90 _cell.entry_id 6M1B _cell.length_a 77.26 _cell.length_b 28.9 _cell.length_c 54.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 125.687913 0 46.719597 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 25 1_555 A SG CYS 81 A CYS 80 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2 ? disulf ? disulf2 A SG CYS 26 A CYS 25 1_555 A SG CYS 81 A CYS 80 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.062 ? metalc ? metalc1 A O HIS 85 A HIS 84 1_555 D MG MG . A MG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc2 A O LEU 88 A LEU 87 1_555 D MG MG . A MG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc3 C O1 GOL . A GOL 102 1_555 D MG MG . A MG 103 4_746 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc4 D MG MG . A MG 103 1_555 G O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc5 D MG MG . A MG 103 1_555 G O HOH . A HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc6 E CA CA . A CA 104 1_555 G O HOH . A HOH 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc7 E CA CA . A CA 104 1_555 G O HOH . A HOH 221 2_756 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6M1B _atom_sites.fract_transf_matrix[1][1] 0.012943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007988 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 101 101 GOL GOL . C 2 GOL A 1 102 102 GOL GOL . D 3 MG A 1 103 103 MG MG . E 4 CA A 1 104 104 CA CA . F 5 PO4 A 1 105 105 PO4 PO4 . G 6 HOH A 1 201 201 HOH HOH . G 6 HOH A 2 202 202 HOH HOH . G 6 HOH A 3 203 203 HOH HOH . G 6 HOH A 4 204 204 HOH HOH . G 6 HOH A 5 205 205 HOH HOH . G 6 HOH A 6 206 206 HOH HOH . G 6 HOH A 7 207 207 HOH HOH . G 6 HOH A 8 208 208 HOH HOH . G 6 HOH A 9 209 209 HOH HOH . G 6 HOH A 10 210 210 HOH HOH . G 6 HOH A 11 211 211 HOH HOH . G 6 HOH A 12 212 212 HOH HOH . G 6 HOH A 13 213 213 HOH HOH . G 6 HOH A 14 214 214 HOH HOH . G 6 HOH A 15 215 215 HOH HOH . G 6 HOH A 16 216 216 HOH HOH . G 6 HOH A 17 217 217 HOH HOH . G 6 HOH A 18 218 218 HOH HOH . G 6 HOH A 19 219 219 HOH HOH . G 6 HOH A 20 220 220 HOH HOH . G 6 HOH A 21 221 221 HOH HOH . G 6 HOH A 22 222 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 87.475 -19.462 25.474 1 51.98 ? C1 GOL 101 A 1 HETATM 2 O O1 GOL . . . B 2 86.725 -20.618 25.801 1 38.87 ? O1 GOL 101 A 1 HETATM 3 C C2 GOL . . . B 2 88.367 -19.82 24.3 1 44.21 ? C2 GOL 101 A 1 HETATM 4 O O2 GOL . . . B 2 88.999 -18.652 23.853 1 55.21 ? O2 GOL 101 A 1 HETATM 5 C C3 GOL . . . B 2 89.376 -20.856 24.767 1 51.32 ? C3 GOL 101 A 1 HETATM 6 O O3 GOL . . . B 2 89.536 -20.753 26.165 1 53.43 ? O3 GOL 101 A 1 HETATM 7 H H11 GOL . . . B 2 88.081 -19.153 26.326 1 62.38 ? H11 GOL 101 A 1 HETATM 8 H H12 GOL . . . B 2 86.808 -18.643 25.205 1 62.38 ? H12 GOL 101 A 1 HETATM 9 H HO1 GOL . . . B 2 86.185 -20.442 26.599 1 46.65 ? HO1 GOL 101 A 1 HETATM 10 H H2 GOL . . . B 2 87.757 -20.248 23.505 1 53.05 ? H2 GOL 101 A 1 HETATM 11 H HO2 GOL . . . B 2 89.534 -18.271 24.581 1 66.25 ? HO2 GOL 101 A 1 HETATM 12 H H31 GOL . . . B 2 90.333 -20.689 24.272 1 61.59 ? H31 GOL 101 A 1 HETATM 13 H H32 GOL . . . B 2 89.027 -21.855 24.507 1 61.59 ? H32 GOL 101 A 1 HETATM 14 H HO3 GOL . . . B 2 88.886 -21.335 26.612 1 64.12 ? HO3 GOL 101 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #