data_6M1K # _model_server_result.job_id qry-qh7emzlvGyF1Ue9-1A _model_server_result.datetime_utc '2024-10-18 04:33:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6M1K # _exptl.entry_id 6M1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 551.037 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 4-[[4-[[3-[4-(aminomethyl)phenyl]-2-methyl-7-oxidanylidene-pyrazolo[4,3-d]pyrimidin-6-yl]methyl]-4-oxidanyl-piperidin-1-yl]methyl]-3-chloranyl-benzoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.56 _cell.angle_gamma 90 _cell.entry_id 6M1K _cell.length_a 76.065 _cell.length_b 69.2 _cell.length_c 76.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C28 H31 Cl N6 O4' _chem_comp.formula_weight 551.037 _chem_comp.id EZF _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 4-[[4-[[3-[4-(aminomethyl)phenyl]-2-methyl-7-oxidanylidene-pyrazolo[4,3-d]pyrimidin-6-yl]methyl]-4-oxidanyl-piperidin-1-yl]methyl]-3-chloranyl-benzoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 O02 EZF sing 83 n n O02 C12 EZF sing 84 n n O03 C12 EZF doub 85 n n C12 C15 EZF sing 86 n n C15 C14 EZF doub 87 n y C15 C16 EZF sing 88 n y C14 C13 EZF sing 89 n y C16 C17 EZF doub 90 n y C13 C18 EZF doub 91 n y C17 C18 EZF sing 92 n y C17 CL1 EZF sing 93 n n C18 C19 EZF sing 94 n n C19 N22 EZF sing 95 n n N22 C21 EZF sing 96 n n N22 C23 EZF sing 97 n n C21 C20 EZF sing 98 n n C20 C26 EZF sing 99 n n C31 N39 EZF sing 100 n n C23 C24 EZF sing 101 n n N35 N39 EZF sing 102 n y N35 C36 EZF doub 103 n y O33 C34 EZF doub 104 n n N39 C38 EZF sing 105 n y C36 C34 EZF sing 106 n n C36 C37 EZF sing 107 n y C34 N29 EZF sing 108 n n C26 C24 EZF sing 109 n n C26 O25 EZF sing 110 n n C26 C27 EZF sing 111 n n C38 C37 EZF doub 112 n y C38 C28 EZF sing 113 n n C37 N32 EZF sing 114 n n N29 C27 EZF sing 115 n n N29 C30 EZF sing 116 n n C28 C10 EZF doub 117 n y C28 C06 EZF sing 118 n y C10 C09 EZF sing 119 n y N32 C30 EZF doub 120 n n C06 C07 EZF doub 121 n y C09 C08 EZF doub 122 n y C07 C08 EZF sing 123 n y C08 C05 EZF sing 124 n n C05 N04 EZF sing 125 n n C10 H1 EZF sing 126 n n C13 H2 EZF sing 127 n n C20 H3 EZF sing 128 n n C20 H4 EZF sing 129 n n C21 H5 EZF sing 130 n n C21 H6 EZF sing 131 n n C24 H7 EZF sing 132 n n C24 H8 EZF sing 133 n n C01 H9 EZF sing 134 n n C01 H10 EZF sing 135 n n C01 H11 EZF sing 136 n n C05 H12 EZF sing 137 n n C05 H13 EZF sing 138 n n C06 H14 EZF sing 139 n n C07 H15 EZF sing 140 n n C09 H16 EZF sing 141 n n C14 H17 EZF sing 142 n n C16 H18 EZF sing 143 n n C19 H19 EZF sing 144 n n C19 H20 EZF sing 145 n n C23 H21 EZF sing 146 n n C23 H22 EZF sing 147 n n C27 H23 EZF sing 148 n n C27 H24 EZF sing 149 n n C30 H25 EZF sing 150 n n C31 H26 EZF sing 151 n n C31 H27 EZF sing 152 n n C31 H28 EZF sing 153 n n N04 H29 EZF sing 154 n n N04 H30 EZF sing 155 n n O25 H33 EZF sing 156 n n # _atom_sites.entry_id 6M1K _atom_sites.fract_transf_matrix[1][1] 0.013147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001281 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EZF A 1 601 1 EZF LIG . D 2 EZF B 1 601 2 EZF LIG . E 3 HOH A 1 701 142 HOH HOH . E 3 HOH A 2 702 8 HOH HOH . E 3 HOH A 3 703 23 HOH HOH . E 3 HOH A 4 704 187 HOH HOH . E 3 HOH A 5 705 136 HOH HOH . E 3 HOH A 6 706 5 HOH HOH . E 3 HOH A 7 707 111 HOH HOH . E 3 HOH A 8 708 70 HOH HOH . E 3 HOH A 9 709 73 HOH HOH . E 3 HOH A 10 710 9 HOH HOH . E 3 HOH A 11 711 123 HOH HOH . E 3 HOH A 12 712 108 HOH HOH . E 3 HOH A 13 713 2 HOH HOH . E 3 HOH A 14 714 78 HOH HOH . E 3 HOH A 15 715 175 HOH HOH . E 3 HOH A 16 716 30 HOH HOH . E 3 HOH A 17 717 21 HOH HOH . E 3 HOH A 18 718 37 HOH HOH . E 3 HOH A 19 719 40 HOH HOH . E 3 HOH A 20 720 141 HOH HOH . E 3 HOH A 21 721 130 HOH HOH . E 3 HOH A 22 722 183 HOH HOH . E 3 HOH A 23 723 69 HOH HOH . E 3 HOH A 24 724 74 HOH HOH . E 3 HOH A 25 725 131 HOH HOH . E 3 HOH A 26 726 147 HOH HOH . E 3 HOH A 27 727 58 HOH HOH . E 3 HOH A 28 728 42 HOH HOH . E 3 HOH A 29 729 17 HOH HOH . E 3 HOH A 30 730 33 HOH HOH . E 3 HOH A 31 731 79 HOH HOH . E 3 HOH A 32 732 34 HOH HOH . E 3 HOH A 33 733 71 HOH HOH . E 3 HOH A 34 734 7 HOH HOH . E 3 HOH A 35 735 10 HOH HOH . E 3 HOH A 36 736 3 HOH HOH . E 3 HOH A 37 737 35 HOH HOH . E 3 HOH A 38 738 75 HOH HOH . E 3 HOH A 39 739 87 HOH HOH . E 3 HOH A 40 740 44 HOH HOH . E 3 HOH A 41 741 86 HOH HOH . E 3 HOH A 42 742 16 HOH HOH . E 3 HOH A 43 743 85 HOH HOH . E 3 HOH A 44 744 1 HOH HOH . E 3 HOH A 45 745 18 HOH HOH . E 3 HOH A 46 746 19 HOH HOH . E 3 HOH A 47 747 80 HOH HOH . E 3 HOH A 48 748 72 HOH HOH . E 3 HOH A 49 749 106 HOH HOH . E 3 HOH A 50 750 150 HOH HOH . E 3 HOH A 51 751 45 HOH HOH . E 3 HOH A 52 752 46 HOH HOH . E 3 HOH A 53 753 4 HOH HOH . E 3 HOH A 54 754 98 HOH HOH . E 3 HOH A 55 755 68 HOH HOH . E 3 HOH A 56 756 143 HOH HOH . E 3 HOH A 57 757 22 HOH HOH . E 3 HOH A 58 758 43 HOH HOH . E 3 HOH A 59 759 100 HOH HOH . E 3 HOH A 60 760 120 HOH HOH . E 3 HOH A 61 761 83 HOH HOH . E 3 HOH A 62 762 97 HOH HOH . E 3 HOH A 63 763 56 HOH HOH . E 3 HOH A 64 764 67 HOH HOH . E 3 HOH A 65 765 49 HOH HOH . E 3 HOH A 66 766 63 HOH HOH . E 3 HOH A 67 767 122 HOH HOH . E 3 HOH A 68 768 47 HOH HOH . E 3 HOH A 69 769 39 HOH HOH . E 3 HOH A 70 770 159 HOH HOH . E 3 HOH A 71 771 77 HOH HOH . E 3 HOH A 72 772 113 HOH HOH . E 3 HOH A 73 773 26 HOH HOH . E 3 HOH A 74 774 185 HOH HOH . E 3 HOH A 75 775 105 HOH HOH . E 3 HOH A 76 776 99 HOH HOH . E 3 HOH A 77 777 66 HOH HOH . E 3 HOH A 78 778 94 HOH HOH . E 3 HOH A 79 779 174 HOH HOH . E 3 HOH A 80 780 181 HOH HOH . E 3 HOH A 81 781 160 HOH HOH . E 3 HOH A 82 782 154 HOH HOH . E 3 HOH A 83 783 133 HOH HOH . E 3 HOH A 84 784 161 HOH HOH . E 3 HOH A 85 785 151 HOH HOH . E 3 HOH A 86 786 92 HOH HOH . E 3 HOH A 87 787 116 HOH HOH . E 3 HOH A 88 788 170 HOH HOH . E 3 HOH A 89 789 129 HOH HOH . E 3 HOH A 90 790 126 HOH HOH . E 3 HOH A 91 791 125 HOH HOH . E 3 HOH A 92 792 173 HOH HOH . E 3 HOH A 93 793 114 HOH HOH . E 3 HOH A 94 794 88 HOH HOH . E 3 HOH A 95 795 148 HOH HOH . E 3 HOH A 96 796 138 HOH HOH . E 3 HOH A 97 797 137 HOH HOH . E 3 HOH A 98 798 184 HOH HOH . F 3 HOH B 1 701 149 HOH HOH . F 3 HOH B 2 702 53 HOH HOH . F 3 HOH B 3 703 50 HOH HOH . F 3 HOH B 4 704 144 HOH HOH . F 3 HOH B 5 705 146 HOH HOH . F 3 HOH B 6 706 132 HOH HOH . F 3 HOH B 7 707 55 HOH HOH . F 3 HOH B 8 708 11 HOH HOH . F 3 HOH B 9 709 60 HOH HOH . F 3 HOH B 10 710 101 HOH HOH . F 3 HOH B 11 711 112 HOH HOH . F 3 HOH B 12 712 29 HOH HOH . F 3 HOH B 13 713 38 HOH HOH . F 3 HOH B 14 714 166 HOH HOH . F 3 HOH B 15 715 102 HOH HOH . F 3 HOH B 16 716 20 HOH HOH . F 3 HOH B 17 717 118 HOH HOH . F 3 HOH B 18 718 32 HOH HOH . F 3 HOH B 19 719 176 HOH HOH . F 3 HOH B 20 720 84 HOH HOH . F 3 HOH B 21 721 25 HOH HOH . F 3 HOH B 22 722 36 HOH HOH . F 3 HOH B 23 723 135 HOH HOH . F 3 HOH B 24 724 76 HOH HOH . F 3 HOH B 25 725 24 HOH HOH . F 3 HOH B 26 726 48 HOH HOH . F 3 HOH B 27 727 128 HOH HOH . F 3 HOH B 28 728 115 HOH HOH . F 3 HOH B 29 729 96 HOH HOH . F 3 HOH B 30 730 103 HOH HOH . F 3 HOH B 31 731 140 HOH HOH . F 3 HOH B 32 732 124 HOH HOH . F 3 HOH B 33 733 65 HOH HOH . F 3 HOH B 34 734 155 HOH HOH . F 3 HOH B 35 735 14 HOH HOH . F 3 HOH B 36 736 52 HOH HOH . F 3 HOH B 37 737 13 HOH HOH . F 3 HOH B 38 738 89 HOH HOH . F 3 HOH B 39 739 62 HOH HOH . F 3 HOH B 40 740 109 HOH HOH . F 3 HOH B 41 741 164 HOH HOH . F 3 HOH B 42 742 41 HOH HOH . F 3 HOH B 43 743 15 HOH HOH . F 3 HOH B 44 744 139 HOH HOH . F 3 HOH B 45 745 93 HOH HOH . F 3 HOH B 46 746 54 HOH HOH . F 3 HOH B 47 747 12 HOH HOH . F 3 HOH B 48 748 188 HOH HOH . F 3 HOH B 49 749 6 HOH HOH . F 3 HOH B 50 750 59 HOH HOH . F 3 HOH B 51 751 91 HOH HOH . F 3 HOH B 52 752 90 HOH HOH . F 3 HOH B 53 753 27 HOH HOH . F 3 HOH B 54 754 104 HOH HOH . F 3 HOH B 55 755 145 HOH HOH . F 3 HOH B 56 756 163 HOH HOH . F 3 HOH B 57 757 95 HOH HOH . F 3 HOH B 58 758 121 HOH HOH . F 3 HOH B 59 759 107 HOH HOH . F 3 HOH B 60 760 117 HOH HOH . F 3 HOH B 61 761 57 HOH HOH . F 3 HOH B 62 762 127 HOH HOH . F 3 HOH B 63 763 64 HOH HOH . F 3 HOH B 64 764 169 HOH HOH . F 3 HOH B 65 765 61 HOH HOH . F 3 HOH B 66 766 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 EZF . . . C 2 -1.682 -14.776 29.335 1 44.23 ? C10 EZF 601 A 1 HETATM 2 C C13 EZF . . . C 2 6.783 -10.622 22.822 1 56.44 ? C13 EZF 601 A 1 HETATM 3 C C15 EZF . . . C 2 5.184 -10.023 21.063 1 60.37 ? C15 EZF 601 A 1 HETATM 4 C C17 EZF . . . C 2 5.004 -9.031 23.294 1 56.14 ? C17 EZF 601 A 1 HETATM 5 C C20 EZF . . . C 2 4.467 -12.009 26.799 1 45.26 ? C20 EZF 601 A 1 HETATM 6 C C21 EZF . . . C 2 4.843 -10.799 25.928 1 45.69 ? C21 EZF 601 A 1 HETATM 7 C C24 EZF . . . C 2 6.424 -11.549 28.21 1 41.28 ? C24 EZF 601 A 1 HETATM 8 C C26 EZF . . . C 2 5.019 -11.921 28.172 1 44.08 ? C26 EZF 601 A 1 HETATM 9 C C28 EZF . . . C 2 -2.143 -13.498 29.304 1 45.49 ? C28 EZF 601 A 1 HETATM 10 C C01 EZF . . . C 2 4.661 -11.929 18.077 1 68.17 ? C01 EZF 601 A 1 HETATM 11 C C05 EZF . . . C 2 -4.498 -16.552 31.31 1 43.73 ? C05 EZF 601 A 1 HETATM 12 C C06 EZF . . . C 2 -3.383 -13.175 29.935 1 47.35 ? C06 EZF 601 A 1 HETATM 13 C C07 EZF . . . C 2 -4.138 -14.185 30.574 1 49.48 ? C07 EZF 601 A 1 HETATM 14 C C08 EZF . . . C 2 -3.673 -15.459 30.594 1 48.07 ? C08 EZF 601 A 1 HETATM 15 C C09 EZF . . . C 2 -2.42 -15.779 29.976 1 47.12 ? C09 EZF 601 A 1 HETATM 16 C C12 EZF . . . C 2 4.631 -10.131 19.628 1 64.73 ? C12 EZF 601 A 1 HETATM 17 C C14 EZF . . . C 2 6.297 -10.744 21.477 1 58.34 ? C14 EZF 601 A 1 HETATM 18 C C16 EZF . . . C 2 4.529 -9.157 21.978 1 61.36 ? C16 EZF 601 A 1 HETATM 19 C C18 EZF . . . C 2 6.133 -9.773 23.725 1 55.31 ? C18 EZF 601 A 1 HETATM 20 C C19 EZF . . . C 2 6.629 -9.617 25.21 1 52.97 ? C19 EZF 601 A 1 HETATM 21 C C23 EZF . . . C 2 6.761 -10.367 27.3 1 43.95 ? C23 EZF 601 A 1 HETATM 22 C C27 EZF . . . C 2 4.134 -10.833 29.031 1 42.84 ? C27 EZF 601 A 1 HETATM 23 C C30 EZF . . . C 2 2.32 -12.278 29.764 1 46.08 ? C30 EZF 601 A 1 HETATM 24 C C31 EZF . . . C 2 -2.975 -11.419 27.048 1 52.75 ? C31 EZF 601 A 1 HETATM 25 C C34 EZF . . . C 2 1.837 -10.706 28.114 1 48.73 ? C34 EZF 601 A 1 HETATM 26 C C36 EZF . . . C 2 0.499 -11.149 28.059 1 49.51 ? C36 EZF 601 A 1 HETATM 27 C C37 EZF . . . C 2 0.124 -12.187 28.894 1 49.62 ? C37 EZF 601 A 1 HETATM 28 C C38 EZF . . . C 2 -1.297 -12.415 28.601 1 48.96 ? C38 EZF 601 A 1 HETATM 29 N N04 EZF . . . C 2 -4.238 -16.466 32.727 1 46.37 ? N04 EZF 601 A 1 HETATM 30 N N22 EZF . . . C 2 6.277 -10.567 25.925 1 51.08 ? N22 EZF 601 A 1 HETATM 31 N N29 EZF . . . C 2 2.697 -11.295 28.976 1 45.09 ? N29 EZF 601 A 1 HETATM 32 N N32 EZF . . . C 2 1.053 -12.756 29.753 1 45.69 ? N32 EZF 601 A 1 HETATM 33 N N35 EZF . . . C 2 -0.593 -10.784 27.333 1 47.23 ? N35 EZF 601 A 1 HETATM 34 N N39 EZF . . . C 2 -1.637 -11.551 27.668 1 53.87 ? N39 EZF 601 A 1 HETATM 35 O O02 EZF . . . C 2 5.35 -10.827 18.622 1 62.39 ? O02 EZF 601 A 1 HETATM 36 O O03 EZF . . . C 2 3.575 -9.628 19.368 1 67.93 ? O03 EZF 601 A 1 HETATM 37 O O25 EZF . . . C 2 4.904 -13.171 28.775 1 44.68 ? O25 EZF 601 A 1 HETATM 38 O O33 EZF . . . C 2 2.188 -9.796 27.389 1 47.78 ? O33 EZF 601 A 1 HETATM 39 CL CL1 EZF . . . C 2 4.159 -7.928 24.45 1 59.61 ? CL1 EZF 601 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #