data_6M1T # _model_server_result.job_id hdRpLEeBbqyJTX_6rin6Nw _model_server_result.datetime_utc '2024-10-10 06:26:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m1t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":304}' # _entry.id 6M1T # _exptl.entry_id 6M1T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M1T _cell.length_a 45.634 _cell.length_b 95.447 _cell.length_c 99.567 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 182 A CYS 182 1_555 D SG CYS . A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf2 B SG CYS 182 B CYS 182 1_555 H SG CYS . B CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 6M1T _atom_sites.fract_transf_matrix[1][1] 0.021913 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GSH A 1 301 1 GSH GSH . D 3 CYS A 1 302 1 CYS CYS . E 4 SO4 A 1 303 1 SO4 SO4 . F 5 1PE A 1 304 101 1PE 1PE . G 2 GSH B 1 301 2 GSH GSH . H 3 CYS B 1 302 2 CYS CYS . I 4 SO4 B 1 303 2 SO4 SO4 . J 6 HOH A 1 401 18 HOH HOH . J 6 HOH A 2 402 126 HOH HOH . J 6 HOH A 3 403 90 HOH HOH . J 6 HOH A 4 404 92 HOH HOH . J 6 HOH A 5 405 12 HOH HOH . J 6 HOH A 6 406 67 HOH HOH . J 6 HOH A 7 407 107 HOH HOH . J 6 HOH A 8 408 1 HOH HOH . J 6 HOH A 9 409 14 HOH HOH . J 6 HOH A 10 410 15 HOH HOH . J 6 HOH A 11 411 30 HOH HOH . J 6 HOH A 12 412 60 HOH HOH . J 6 HOH A 13 413 52 HOH HOH . J 6 HOH A 14 414 16 HOH HOH . J 6 HOH A 15 415 94 HOH HOH . J 6 HOH A 16 416 4 HOH HOH . J 6 HOH A 17 417 6 HOH HOH . J 6 HOH A 18 418 40 HOH HOH . J 6 HOH A 19 419 112 HOH HOH . J 6 HOH A 20 420 63 HOH HOH . J 6 HOH A 21 421 100 HOH HOH . J 6 HOH A 22 422 39 HOH HOH . J 6 HOH A 23 423 5 HOH HOH . J 6 HOH A 24 424 110 HOH HOH . J 6 HOH A 25 425 7 HOH HOH . J 6 HOH A 26 426 47 HOH HOH . J 6 HOH A 27 427 10 HOH HOH . J 6 HOH A 28 428 89 HOH HOH . J 6 HOH A 29 429 28 HOH HOH . J 6 HOH A 30 430 103 HOH HOH . J 6 HOH A 31 431 96 HOH HOH . J 6 HOH A 32 432 81 HOH HOH . J 6 HOH A 33 433 61 HOH HOH . J 6 HOH A 34 434 79 HOH HOH . J 6 HOH A 35 435 35 HOH HOH . J 6 HOH A 36 436 41 HOH HOH . J 6 HOH A 37 437 86 HOH HOH . J 6 HOH A 38 438 25 HOH HOH . J 6 HOH A 39 439 42 HOH HOH . J 6 HOH A 40 440 72 HOH HOH . J 6 HOH A 41 441 101 HOH HOH . J 6 HOH A 42 442 3 HOH HOH . J 6 HOH A 43 443 98 HOH HOH . J 6 HOH A 44 444 62 HOH HOH . J 6 HOH A 45 445 83 HOH HOH . J 6 HOH A 46 446 29 HOH HOH . J 6 HOH A 47 447 33 HOH HOH . J 6 HOH A 48 448 55 HOH HOH . J 6 HOH A 49 449 104 HOH HOH . J 6 HOH A 50 450 74 HOH HOH . J 6 HOH A 51 451 73 HOH HOH . J 6 HOH A 52 452 68 HOH HOH . J 6 HOH A 53 453 102 HOH HOH . K 6 HOH B 1 401 56 HOH HOH . K 6 HOH B 2 402 64 HOH HOH . K 6 HOH B 3 403 59 HOH HOH . K 6 HOH B 4 404 122 HOH HOH . K 6 HOH B 5 405 49 HOH HOH . K 6 HOH B 6 406 85 HOH HOH . K 6 HOH B 7 407 57 HOH HOH . K 6 HOH B 8 408 19 HOH HOH . K 6 HOH B 9 409 20 HOH HOH . K 6 HOH B 10 410 48 HOH HOH . K 6 HOH B 11 411 13 HOH HOH . K 6 HOH B 12 412 34 HOH HOH . K 6 HOH B 13 413 127 HOH HOH . K 6 HOH B 14 414 2 HOH HOH . K 6 HOH B 15 415 113 HOH HOH . K 6 HOH B 16 416 37 HOH HOH . K 6 HOH B 17 417 22 HOH HOH . K 6 HOH B 18 418 51 HOH HOH . K 6 HOH B 19 419 38 HOH HOH . K 6 HOH B 20 420 32 HOH HOH . K 6 HOH B 21 421 43 HOH HOH . K 6 HOH B 22 422 120 HOH HOH . K 6 HOH B 23 423 9 HOH HOH . K 6 HOH B 24 424 27 HOH HOH . K 6 HOH B 25 425 11 HOH HOH . K 6 HOH B 26 426 58 HOH HOH . K 6 HOH B 27 427 50 HOH HOH . K 6 HOH B 28 428 45 HOH HOH . K 6 HOH B 29 429 21 HOH HOH . K 6 HOH B 30 430 24 HOH HOH . K 6 HOH B 31 431 91 HOH HOH . K 6 HOH B 32 432 17 HOH HOH . K 6 HOH B 33 433 105 HOH HOH . K 6 HOH B 34 434 44 HOH HOH . K 6 HOH B 35 435 26 HOH HOH . K 6 HOH B 36 436 23 HOH HOH . K 6 HOH B 37 437 77 HOH HOH . K 6 HOH B 38 438 121 HOH HOH . K 6 HOH B 39 439 53 HOH HOH . K 6 HOH B 40 440 93 HOH HOH . K 6 HOH B 41 441 46 HOH HOH . K 6 HOH B 42 442 8 HOH HOH . K 6 HOH B 43 443 54 HOH HOH . K 6 HOH B 44 444 65 HOH HOH . K 6 HOH B 45 445 31 HOH HOH . K 6 HOH B 46 446 36 HOH HOH . K 6 HOH B 47 447 117 HOH HOH . K 6 HOH B 48 448 88 HOH HOH . K 6 HOH B 49 449 69 HOH HOH . K 6 HOH B 50 450 106 HOH HOH . K 6 HOH B 51 451 76 HOH HOH . K 6 HOH B 52 452 124 HOH HOH . K 6 HOH B 53 453 75 HOH HOH . K 6 HOH B 54 454 82 HOH HOH . K 6 HOH B 55 455 84 HOH HOH . K 6 HOH B 56 456 66 HOH HOH . K 6 HOH B 57 457 87 HOH HOH . K 6 HOH B 58 458 80 HOH HOH . K 6 HOH B 59 459 70 HOH HOH . K 6 HOH B 60 460 128 HOH HOH . K 6 HOH B 61 461 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . F 5 16.661 5.609 -39.39 1 40.84 ? OH2 1PE 304 A 1 HETATM 2 C C12 1PE . . . F 5 15.399 5.089 -39.808 1 40.99 ? C12 1PE 304 A 1 HETATM 3 C C22 1PE . . . F 5 14.202 5.913 -39.355 1 41.7 ? C22 1PE 304 A 1 HETATM 4 O OH3 1PE . . . F 5 14.458 7.304 -39.238 1 42.27 ? OH3 1PE 304 A 1 HETATM 5 C C13 1PE . . . F 5 13.712 9.456 -38.065 1 40.71 ? C13 1PE 304 A 1 HETATM 6 C C23 1PE . . . F 5 13.385 8.031 -38.57 1 42.3 ? C23 1PE 304 A 1 HETATM 7 O OH4 1PE . . . F 5 13.969 9.682 -36.64 1 45.42 ? OH4 1PE 304 A 1 HETATM 8 C C14 1PE . . . F 5 13.437 9.679 -34.203 1 37.99 ? C14 1PE 304 A 1 HETATM 9 C C24 1PE . . . F 5 12.886 9.741 -35.655 1 38.91 ? C24 1PE 304 A 1 HETATM 10 O OH5 1PE . . . F 5 12.503 9.208 -33.169 1 41.27 ? OH5 1PE 304 A 1 HETATM 11 C C15 1PE . . . F 5 10.122 9.206 -32.434 1 36.47 ? C15 1PE 304 A 1 HETATM 12 C C25 1PE . . . F 5 11.197 9.741 -33.343 1 34.28 ? C25 1PE 304 A 1 HETATM 13 O OH6 1PE . . . F 5 8.901 9.881 -32.8 1 36.22 ? OH6 1PE 304 A 1 HETATM 14 C C16 1PE . . . F 5 7.162 10.367 -34.42 1 31.23 ? C16 1PE 304 A 1 HETATM 15 C C26 1PE . . . F 5 8.62 10.13 -34.176 1 27.52 ? C26 1PE 304 A 1 HETATM 16 O OH7 1PE . . . F 5 6.905 10.379 -35.872 1 36.68 ? OH7 1PE 304 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #