data_6M20 # _model_server_result.job_id 63OsqvhKOJg8_YM87ue5qQ _model_server_result.datetime_utc '2024-11-16 13:35:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":601}' # _entry.id 6M20 # _exptl.entry_id 6M20 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.3 _cell.angle_gamma 90 _cell.entry_id 6M20 _cell.length_a 120 _cell.length_b 68.3 _cell.length_c 175.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,V 1 1 B,J,K,L,W 2 1 C,M,N,O,P,Q,X 3 1 D,R,S,T,U,Y 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 J N N ? 2 M N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 61 A CYS 61 1_555 A SG CYS 70 A CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 61 B CYS 61 1_555 B SG CYS 70 B CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 61 C CYS 61 1_555 C SG CYS 70 C CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 61 D CYS 61 1_555 D SG CYS 70 D CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 70 n n C2 C1 BGC sing 71 n n C2 O2 BGC sing 72 n n C2 H2 BGC sing 73 n n C3 C4 BGC sing 74 n n C3 O3 BGC sing 75 n n C3 H3 BGC sing 76 n n C4 C5 BGC sing 77 n n C4 O4 BGC sing 78 n n C4 H4 BGC sing 79 n n C5 C6 BGC sing 80 n n C5 O5 BGC sing 81 n n C5 H5 BGC sing 82 n n C6 O6 BGC sing 83 n n C6 H61 BGC sing 84 n n C6 H62 BGC sing 85 n n C1 O1 BGC sing 86 n n C1 O5 BGC sing 87 n n C1 H1 BGC sing 88 n n O1 HO1 BGC sing 89 n n O2 HO2 BGC sing 90 n n O3 HO3 BGC sing 91 n n O4 HO4 BGC sing 92 n n O6 HO6 BGC sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6M20 _atom_sites.fract_transf_matrix[1][1] 0.008333 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00197 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BGC A 1 601 505 BGC BGC . F 3 BNG A 1 602 506 BNG BNG . G 3 BNG A 1 603 507 BNG BNG . H 3 BNG A 1 604 5 BNG BNG . I 3 BNG A 1 605 6 BNG BNG . J 2 BGC B 1 601 505 BGC BGC . K 3 BNG B 1 602 506 BNG BNG . L 3 BNG B 1 603 507 BNG BNG . M 2 BGC C 1 601 505 BGC BGC . N 3 BNG C 1 602 506 BNG BNG . O 3 BNG C 1 603 507 BNG BNG . P 3 BNG C 1 604 1 BNG BNG . Q 3 BNG C 1 605 3 BNG BNG . R 2 BGC D 1 601 505 BGC BGC . S 3 BNG D 1 602 506 BNG BNG . T 3 BNG D 1 603 507 BNG BNG . U 3 BNG D 1 604 4 BNG BNG . V 4 HOH A 1 701 516 HOH HOH . V 4 HOH A 2 702 517 HOH HOH . V 4 HOH A 3 703 512 HOH HOH . V 4 HOH A 4 704 518 HOH HOH . V 4 HOH A 5 705 513 HOH HOH . V 4 HOH A 6 706 514 HOH HOH . V 4 HOH A 7 707 514 HOH HOH . V 4 HOH A 8 708 515 HOH HOH . V 4 HOH A 9 709 509 HOH HOH . W 4 HOH B 1 701 516 HOH HOH . W 4 HOH B 2 702 513 HOH HOH . W 4 HOH B 3 703 533 HOH HOH . W 4 HOH B 4 704 531 HOH HOH . W 4 HOH B 5 705 517 HOH HOH . W 4 HOH B 6 706 528 HOH HOH . W 4 HOH B 7 707 532 HOH HOH . W 4 HOH B 8 708 529 HOH HOH . W 4 HOH B 9 709 515 HOH HOH . W 4 HOH B 10 710 524 HOH HOH . W 4 HOH B 11 711 512 HOH HOH . W 4 HOH B 12 712 508 HOH HOH . W 4 HOH B 13 713 526 HOH HOH . W 4 HOH B 14 714 511 HOH HOH . W 4 HOH B 15 715 509 HOH HOH . W 4 HOH B 16 716 525 HOH HOH . W 4 HOH B 17 717 510 HOH HOH . W 4 HOH B 18 718 519 HOH HOH . W 4 HOH B 19 719 511 HOH HOH . W 4 HOH B 20 720 520 HOH HOH . X 4 HOH C 1 701 514 HOH HOH . X 4 HOH C 2 702 515 HOH HOH . X 4 HOH C 3 703 516 HOH HOH . X 4 HOH C 4 704 510 HOH HOH . X 4 HOH C 5 705 508 HOH HOH . X 4 HOH C 6 706 511 HOH HOH . X 4 HOH C 7 707 512 HOH HOH . X 4 HOH C 8 708 509 HOH HOH . Y 4 HOH D 1 701 514 HOH HOH . Y 4 HOH D 2 702 512 HOH HOH . Y 4 HOH D 3 703 515 HOH HOH . Y 4 HOH D 4 704 510 HOH HOH . Y 4 HOH D 5 705 513 HOH HOH . Y 4 HOH D 6 706 511 HOH HOH . Y 4 HOH D 7 707 508 HOH HOH . Y 4 HOH D 8 708 509 HOH HOH . Y 4 HOH D 9 709 513 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . B . R 2 -57.588 18.811 -64.57 1 61.16 ? C2 BGC 601 D 1 HETATM 2 C C3 BGC . B . R 2 -56.399 17.87 -64.349 1 63.97 ? C3 BGC 601 D 1 HETATM 3 C C4 BGC . B . R 2 -55.428 18.092 -65.53 1 64.38 ? C4 BGC 601 D 1 HETATM 4 C C5 BGC . B . R 2 -54.943 19.567 -65.474 1 64.84 ? C5 BGC 601 D 1 HETATM 5 C C6 BGC . B . R 2 -54.012 19.74 -66.687 1 66.44 ? C6 BGC 601 D 1 HETATM 6 C C1 BGC . B . R 2 -56.966 20.229 -64.527 1 65.07 ? C1 BGC 601 D 1 HETATM 7 O O1 BGC . B . R 2 -58.06 21.034 -64.791 1 76.11 ? O1 BGC 601 D 1 HETATM 8 O O2 BGC . B . R 2 -58.446 18.659 -63.487 1 62.59 ? O2 BGC 601 D 1 HETATM 9 O O3 BGC . B . R 2 -56.778 16.535 -64.415 1 60.02 ? O3 BGC 601 D 1 HETATM 10 O O4 BGC . B . R 2 -54.296 17.309 -65.333 1 68.25 ? O4 BGC 601 D 1 HETATM 11 O O5 BGC . B . R 2 -56.061 20.42 -65.593 1 67.26 ? O5 BGC 601 D 1 HETATM 12 O O6 BGC . B . R 2 -53.642 21.084 -66.743 1 73.53 ? O6 BGC 601 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #