data_6M20
#
_model_server_result.job_id            Yf2chZz5KMJ3BHuolx4wYw 
_model_server_result.datetime_utc      '2024-11-16 13:39:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6m20 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":605}' 
#
_entry.id    6M20 
#
_exptl.entry_id    6M20 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.395 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'nonyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.3 
_cell.angle_gamma         90 
_cell.entry_id            6M20 
_cell.length_a            120 
_cell.length_b            68.3 
_cell.length_c            175.3 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6M20 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,V 1 1 
B,J,K,L,W 2 1 
C,M,N,O,P,Q,X 3 1 
D,R,S,T,U,Y 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 K N N 
? 3 L N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 61 A CYS 61 1_555 A SG CYS 70 A CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 61 B CYS 61 1_555 B SG CYS 70 B CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 C SG CYS 61 C CYS 61 1_555 C SG CYS 70 C CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 D SG CYS 61 D CYS 61 1_555 D SG CYS 70 D CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C15 H30 O6' 
_chem_comp.formula_weight    306.395 
_chem_comp.id                BNG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'nonyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BNG sing 94 n n 
C1 O1 BNG sing 95 n n 
C1 O5 BNG sing 96 n n 
C1 H1 BNG sing 97 n n 
C2 C3 BNG sing 98 n n 
C2 O2 BNG sing 99 n n 
C2 H2 BNG sing 100 n n 
C3 C4 BNG sing 101 n n 
C3 O3 BNG sing 102 n n 
C3 H3 BNG sing 103 n n 
C4 C5 BNG sing 104 n n 
C4 O4 BNG sing 105 n n 
C4 H4 BNG sing 106 n n 
C5 C6 BNG sing 107 n n 
C5 O5 BNG sing 108 n n 
C5 H5 BNG sing 109 n n 
C6 O6 BNG sing 110 n n 
C6 H61 BNG sing 111 n n 
C6 H62 BNG sing 112 n n 
C1' C2' BNG sing 113 n n 
C1' O1 BNG sing 114 n n 
C1' "H1'1" BNG sing 115 n n 
C1' "H1'2" BNG sing 116 n n 
C2' C3' BNG sing 117 n n 
C2' "H2'1" BNG sing 118 n n 
C2' "H2'2" BNG sing 119 n n 
C3' C4' BNG sing 120 n n 
C3' "H3'1" BNG sing 121 n n 
C3' "H3'2" BNG sing 122 n n 
C4' C5' BNG sing 123 n n 
C4' "H4'1" BNG sing 124 n n 
C4' "H4'2" BNG sing 125 n n 
C5' C6' BNG sing 126 n n 
C5' "H5'1" BNG sing 127 n n 
C5' "H5'2" BNG sing 128 n n 
C6' C7' BNG sing 129 n n 
C6' "H6'1" BNG sing 130 n n 
C6' "H6'2" BNG sing 131 n n 
C7' C8' BNG sing 132 n n 
C7' "H7'1" BNG sing 133 n n 
C7' "H7'2" BNG sing 134 n n 
C8' C9' BNG sing 135 n n 
C8' "H8'1" BNG sing 136 n n 
C8' "H8'2" BNG sing 137 n n 
C9' "H9'1" BNG sing 138 n n 
C9' "H9'2" BNG sing 139 n n 
C9' "H9'3" BNG sing 140 n n 
O2 HO2 BNG sing 141 n n 
O3 HO3 BNG sing 142 n n 
O4 HO4 BNG sing 143 n n 
O6 HO6 BNG sing 144 n n 
#
_pdbx_chem_comp_identifier.comp_id            BNG 
_pdbx_chem_comp_identifier.identifier         b-nonylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     6M20 
_atom_sites.fract_transf_matrix[1][1]    0.008333 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00197 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014641 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005862 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 BGC A 1 601 505 BGC BGC . 
F 3 BNG A 1 602 506 BNG BNG . 
G 3 BNG A 1 603 507 BNG BNG . 
H 3 BNG A 1 604 5 BNG BNG . 
I 3 BNG A 1 605 6 BNG BNG . 
J 2 BGC B 1 601 505 BGC BGC . 
K 3 BNG B 1 602 506 BNG BNG . 
L 3 BNG B 1 603 507 BNG BNG . 
M 2 BGC C 1 601 505 BGC BGC . 
N 3 BNG C 1 602 506 BNG BNG . 
O 3 BNG C 1 603 507 BNG BNG . 
P 3 BNG C 1 604 1 BNG BNG . 
Q 3 BNG C 1 605 3 BNG BNG . 
R 2 BGC D 1 601 505 BGC BGC . 
S 3 BNG D 1 602 506 BNG BNG . 
T 3 BNG D 1 603 507 BNG BNG . 
U 3 BNG D 1 604 4 BNG BNG . 
V 4 HOH A 1 701 516 HOH HOH . 
V 4 HOH A 2 702 517 HOH HOH . 
V 4 HOH A 3 703 512 HOH HOH . 
V 4 HOH A 4 704 518 HOH HOH . 
V 4 HOH A 5 705 513 HOH HOH . 
V 4 HOH A 6 706 514 HOH HOH . 
V 4 HOH A 7 707 514 HOH HOH . 
V 4 HOH A 8 708 515 HOH HOH . 
V 4 HOH A 9 709 509 HOH HOH . 
W 4 HOH B 1 701 516 HOH HOH . 
W 4 HOH B 2 702 513 HOH HOH . 
W 4 HOH B 3 703 533 HOH HOH . 
W 4 HOH B 4 704 531 HOH HOH . 
W 4 HOH B 5 705 517 HOH HOH . 
W 4 HOH B 6 706 528 HOH HOH . 
W 4 HOH B 7 707 532 HOH HOH . 
W 4 HOH B 8 708 529 HOH HOH . 
W 4 HOH B 9 709 515 HOH HOH . 
W 4 HOH B 10 710 524 HOH HOH . 
W 4 HOH B 11 711 512 HOH HOH . 
W 4 HOH B 12 712 508 HOH HOH . 
W 4 HOH B 13 713 526 HOH HOH . 
W 4 HOH B 14 714 511 HOH HOH . 
W 4 HOH B 15 715 509 HOH HOH . 
W 4 HOH B 16 716 525 HOH HOH . 
W 4 HOH B 17 717 510 HOH HOH . 
W 4 HOH B 18 718 519 HOH HOH . 
W 4 HOH B 19 719 511 HOH HOH . 
W 4 HOH B 20 720 520 HOH HOH . 
X 4 HOH C 1 701 514 HOH HOH . 
X 4 HOH C 2 702 515 HOH HOH . 
X 4 HOH C 3 703 516 HOH HOH . 
X 4 HOH C 4 704 510 HOH HOH . 
X 4 HOH C 5 705 508 HOH HOH . 
X 4 HOH C 6 706 511 HOH HOH . 
X 4 HOH C 7 707 512 HOH HOH . 
X 4 HOH C 8 708 509 HOH HOH . 
Y 4 HOH D 1 701 514 HOH HOH . 
Y 4 HOH D 2 702 512 HOH HOH . 
Y 4 HOH D 3 703 515 HOH HOH . 
Y 4 HOH D 4 704 510 HOH HOH . 
Y 4 HOH D 5 705 513 HOH HOH . 
Y 4 HOH D 6 706 511 HOH HOH . 
Y 4 HOH D 7 707 508 HOH HOH . 
Y 4 HOH D 8 708 509 HOH HOH . 
Y 4 HOH D 9 709 513 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BNG . . . I 3 25.913 -35.089 -49.306 1 94.66 ? C1 BNG 605 A 1 
HETATM 2 C C2 BNG . . . I 3 24.842 -35.164 -50.378 1 80.66 ? C2 BNG 605 A 1 
HETATM 3 C C3 BNG . . . I 3 24.458 -36.611 -50.628 1 84.8 ? C3 BNG 605 A 1 
HETATM 4 C C4 BNG . . . I 3 25.7 -37.439 -50.852 1 99.16 ? C4 BNG 605 A 1 
HETATM 5 C C5 BNG . . . I 3 26.659 -37.176 -49.718 1 99.21 ? C5 BNG 605 A 1 
HETATM 6 C C6 BNG . . . I 3 27.875 -38.062 -49.869 1 114.44 ? C6 BNG 605 A 1 
HETATM 7 C C1' BNG . . . I 3 27.145 -33.638 -47.944 1 87.89 ? C1' BNG 605 A 1 
HETATM 8 C C2' BNG . . . I 3 27.641 -32.218 -47.798 1 85.87 ? C2' BNG 605 A 1 
HETATM 9 C C3' BNG . . . I 3 26.47 -31.301 -47.535 1 88.81 ? C3' BNG 605 A 1 
HETATM 10 C C4' BNG . . . I 3 25.775 -31.71 -46.255 1 82.7 ? C4' BNG 605 A 1 
HETATM 11 C C5' BNG . . . I 3 24.674 -30.709 -45.989 1 80.49 ? C5' BNG 605 A 1 
HETATM 12 C C6' BNG . . . I 3 23.813 -31.185 -44.841 1 75.88 ? C6' BNG 605 A 1 
HETATM 13 C C7' BNG . . . I 3 22.743 -30.149 -44.582 1 76.23 ? C7' BNG 605 A 1 
HETATM 14 C C8' BNG . . . I 3 21.848 -30.625 -43.461 1 78.75 ? C8' BNG 605 A 1 
HETATM 15 C C9' BNG . . . I 3 20.964 -29.479 -43.024 1 75.3 ? C9' BNG 605 A 1 
HETATM 16 O O1 BNG . . . I 3 26.288 -33.753 -49.058 1 96.06 ? O1 BNG 605 A 1 
HETATM 17 O O2 BNG . . . I 3 23.7 -34.45 -49.963 1 78.13 ? O2 BNG 605 A 1 
HETATM 18 O O3 BNG . . . I 3 23.629 -36.705 -51.764 1 87.55 ? O3 BNG 605 A 1 
HETATM 19 O O4 BNG . . . I 3 25.359 -38.804 -50.846 1 110 ? O4 BNG 605 A 1 
HETATM 20 O O5 BNG . . . I 3 27.037 -35.825 -49.718 1 96.42 ? O5 BNG 605 A 1 
HETATM 21 O O6 BNG . . . I 3 27.882 -38.976 -48.784 1 127.6 ? O6 BNG 605 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#