data_6M23 # _model_server_result.job_id l14p-27IY3G7UuK0YsFvRA _model_server_result.datetime_utc '2024-12-26 13:14:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1209}' # _entry.id 6M23 # _exptl.entry_id 6M23 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M23 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 N N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1401 NAG 2 n C NAG 2 C 2 NAG A 1402 NAG 2 n D NAG 1 D 1 NAG A 1403 NAG 2 n D NAG 2 D 2 NAG A 1404 NAG 2 n E NAG 1 E 1 NAG A 1405 NAG 2 n E NAG 2 E 2 NAG A 1406 NAG 2 n F NAG 1 F 1 NAG B 1401 NAG 2 n F NAG 2 F 2 NAG B 1402 NAG 2 n G NAG 1 G 1 NAG B 1403 NAG 2 n G NAG 2 G 2 NAG B 1404 NAG 2 n H NAG 1 H 1 NAG B 1405 NAG 2 n H NAG 2 H 2 NAG B 1406 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 335 A CYS 322 1_555 A SG CYS 344 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 335 B CYS 322 1_555 B SG CYS 344 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 304 A ASN 291 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A ND2 ASN 323 A ASN 310 1_555 K C1 NAG . A NAG 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 341 A ASN 328 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale4 A ND2 ASN 352 A ASN 339 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale5 A C LYS 918 A LYS 905 1_555 A N TPO 919 A TPO 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C TPO 919 A TPO 906 1_555 A N LEU 920 A LEU 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C LEU 1019 A LEU 1006 1_555 A N TPO 1020 A TPO 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C TPO 1020 A TPO 1007 1_555 A N TRP 1021 A TRP 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 B ND2 ASN 304 B ASN 291 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale10 B ND2 ASN 323 B ASN 310 1_555 N C1 NAG . B NAG 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 B ND2 ASN 341 B ASN 328 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale12 B ND2 ASN 352 B ASN 339 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale13 B C LYS 918 B LYS 905 1_555 B N TPO 919 B TPO 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C TPO 919 B TPO 906 1_555 B N LEU 920 B LEU 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale15 B C LEU 1019 B LEU 1006 1_555 B N TPO 1020 B TPO 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 B C TPO 1020 B TPO 1007 1_555 B N TRP 1021 B TRP 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale17 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale18 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale19 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale20 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale21 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale22 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 A O ILE 124 A ILE 111 1_555 I K K . A K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.467 ? metalc ? metalc2 A OG SER 423 A SER 410 1_555 I K K . A K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc3 A OH TYR 459 A TYR 446 1_555 I K K . A K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc4 B O ILE 124 B ILE 111 1_555 L K K . B K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.467 ? metalc ? metalc5 B OG SER 423 B SER 410 1_555 L K K . B K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc6 B OH TYR 459 B TYR 446 1_555 L K K . B K 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6M23 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 K A 1 1201 1201 K K . J 4 CL A 1 1202 1202 CL CL . K 5 NAG A 1 1209 1407 NAG NAG . L 3 K B 1 1201 1201 K K . M 4 CL B 1 1202 1202 CL CL . N 5 NAG B 1 1209 1407 NAG NAG . O 6 HOH A 1 1301 1301 HOH HOH . P 6 HOH B 1 1301 1301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 5 160.477 216.77 117.346 1 123.82 ? C1 NAG 1209 A 1 HETATM 2 C C2 NAG . . . K 5 161.104 218.107 116.936 1 123.82 ? C2 NAG 1209 A 1 HETATM 3 C C3 NAG . . . K 5 160.069 219.232 117.041 1 123.82 ? C3 NAG 1209 A 1 HETATM 4 C C4 NAG . . . K 5 158.791 218.881 116.288 1 123.82 ? C4 NAG 1209 A 1 HETATM 5 C C5 NAG . . . K 5 158.266 217.516 116.728 1 123.82 ? C5 NAG 1209 A 1 HETATM 6 C C6 NAG . . . K 5 157.08 217.05 115.917 1 123.82 ? C6 NAG 1209 A 1 HETATM 7 C C7 NAG . . . K 5 163.321 219.095 117.322 1 123.82 ? C7 NAG 1209 A 1 HETATM 8 C C8 NAG . . . K 5 164.424 219.309 118.315 1 123.82 ? C8 NAG 1209 A 1 HETATM 9 N N2 NAG . . . K 5 162.263 218.407 117.761 1 123.82 ? N2 NAG 1209 A 1 HETATM 10 O O3 NAG . . . K 5 160.615 220.433 116.507 1 123.82 ? O3 NAG 1209 A 1 HETATM 11 O O4 NAG . . . K 5 157.795 219.864 116.545 1 123.82 ? O4 NAG 1209 A 1 HETATM 12 O O5 NAG . . . K 5 159.295 216.529 116.562 1 123.82 ? O5 NAG 1209 A 1 HETATM 13 O O6 NAG . . . K 5 157.266 215.724 115.44 1 123.82 ? O6 NAG 1209 A 1 HETATM 14 O O7 NAG . . . K 5 163.383 219.529 116.176 1 123.82 ? O7 NAG 1209 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #