data_6M2B # _model_server_result.job_id 48gNo9znzVYdpGk2MrnnCw _model_server_result.datetime_utc '2025-03-09 02:13:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m2b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6M2B # _exptl.entry_id 6M2B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6M2B _cell.length_a 91.04 _cell.length_b 91.04 _cell.length_c 122.18 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M2B _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 111 n n N1 C10 FMN doub 112 n n C2 O2 FMN doub 113 n n C2 N3 FMN sing 114 n n N3 C4 FMN sing 115 n n N3 HN3 FMN sing 116 n n C4 O4 FMN doub 117 n n C4 C4A FMN sing 118 n n C4A N5 FMN doub 119 n n C4A C10 FMN sing 120 n n N5 C5A FMN sing 121 n n C5A C6 FMN doub 122 n y C5A C9A FMN sing 123 n y C6 C7 FMN sing 124 n y C6 H6 FMN sing 125 n n C7 C7M FMN sing 126 n n C7 C8 FMN doub 127 n y C7M HM71 FMN sing 128 n n C7M HM72 FMN sing 129 n n C7M HM73 FMN sing 130 n n C8 C8M FMN sing 131 n n C8 C9 FMN sing 132 n y C8M HM81 FMN sing 133 n n C8M HM82 FMN sing 134 n n C8M HM83 FMN sing 135 n n C9 C9A FMN doub 136 n y C9 H9 FMN sing 137 n n C9A N10 FMN sing 138 n n N10 C10 FMN sing 139 n n N10 C1' FMN sing 140 n n C1' C2' FMN sing 141 n n C1' "H1'1" FMN sing 142 n n C1' "H1'2" FMN sing 143 n n C2' O2' FMN sing 144 n n C2' C3' FMN sing 145 n n C2' H2' FMN sing 146 n n O2' HO2' FMN sing 147 n n C3' O3' FMN sing 148 n n C3' C4' FMN sing 149 n n C3' H3' FMN sing 150 n n O3' HO3' FMN sing 151 n n C4' O4' FMN sing 152 n n C4' C5' FMN sing 153 n n C4' H4' FMN sing 154 n n O4' HO4' FMN sing 155 n n C5' O5' FMN sing 156 n n C5' "H5'1" FMN sing 157 n n C5' "H5'2" FMN sing 158 n n O5' P FMN sing 159 n n P O1P FMN doub 160 n n P O2P FMN sing 161 n n P O3P FMN sing 162 n n O2P HOP2 FMN sing 163 n n O3P HOP3 FMN sing 164 n n # _atom_sites.entry_id 6M2B _atom_sites.fract_transf_matrix[1][1] 0.010984 _atom_sites.fract_transf_matrix[1][2] 0.006342 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 398 FMN FMN . C 3 ORO A 1 402 399 ORO ORO . D 4 EZO A 1 403 1 EZO 416 . E 5 HOH A 1 501 78 HOH HOH . E 5 HOH A 2 502 90 HOH HOH . E 5 HOH A 3 503 15 HOH HOH . E 5 HOH A 4 504 76 HOH HOH . E 5 HOH A 5 505 99 HOH HOH . E 5 HOH A 6 506 92 HOH HOH . E 5 HOH A 7 507 117 HOH HOH . E 5 HOH A 8 508 83 HOH HOH . E 5 HOH A 9 509 24 HOH HOH . E 5 HOH A 10 510 95 HOH HOH . E 5 HOH A 11 511 25 HOH HOH . E 5 HOH A 12 512 84 HOH HOH . E 5 HOH A 13 513 130 HOH HOH . E 5 HOH A 14 514 66 HOH HOH . E 5 HOH A 15 515 88 HOH HOH . E 5 HOH A 16 516 7 HOH HOH . E 5 HOH A 17 517 75 HOH HOH . E 5 HOH A 18 518 138 HOH HOH . E 5 HOH A 19 519 6 HOH HOH . E 5 HOH A 20 520 135 HOH HOH . E 5 HOH A 21 521 3 HOH HOH . E 5 HOH A 22 522 33 HOH HOH . E 5 HOH A 23 523 42 HOH HOH . E 5 HOH A 24 524 94 HOH HOH . E 5 HOH A 25 525 13 HOH HOH . E 5 HOH A 26 526 5 HOH HOH . E 5 HOH A 27 527 19 HOH HOH . E 5 HOH A 28 528 101 HOH HOH . E 5 HOH A 29 529 110 HOH HOH . E 5 HOH A 30 530 106 HOH HOH . E 5 HOH A 31 531 59 HOH HOH . E 5 HOH A 32 532 93 HOH HOH . E 5 HOH A 33 533 113 HOH HOH . E 5 HOH A 34 534 35 HOH HOH . E 5 HOH A 35 535 45 HOH HOH . E 5 HOH A 36 536 26 HOH HOH . E 5 HOH A 37 537 31 HOH HOH . E 5 HOH A 38 538 68 HOH HOH . E 5 HOH A 39 539 100 HOH HOH . E 5 HOH A 40 540 2 HOH HOH . E 5 HOH A 41 541 105 HOH HOH . E 5 HOH A 42 542 96 HOH HOH . E 5 HOH A 43 543 1 HOH HOH . E 5 HOH A 44 544 144 HOH HOH . E 5 HOH A 45 545 39 HOH HOH . E 5 HOH A 46 546 21 HOH HOH . E 5 HOH A 47 547 14 HOH HOH . E 5 HOH A 48 548 72 HOH HOH . E 5 HOH A 49 549 91 HOH HOH . E 5 HOH A 50 550 140 HOH HOH . E 5 HOH A 51 551 41 HOH HOH . E 5 HOH A 52 552 87 HOH HOH . E 5 HOH A 53 553 128 HOH HOH . E 5 HOH A 54 554 17 HOH HOH . E 5 HOH A 55 555 67 HOH HOH . E 5 HOH A 56 556 37 HOH HOH . E 5 HOH A 57 557 71 HOH HOH . E 5 HOH A 58 558 98 HOH HOH . E 5 HOH A 59 559 57 HOH HOH . E 5 HOH A 60 560 43 HOH HOH . E 5 HOH A 61 561 55 HOH HOH . E 5 HOH A 62 562 52 HOH HOH . E 5 HOH A 63 563 22 HOH HOH . E 5 HOH A 64 564 77 HOH HOH . E 5 HOH A 65 565 28 HOH HOH . E 5 HOH A 66 566 18 HOH HOH . E 5 HOH A 67 567 124 HOH HOH . E 5 HOH A 68 568 127 HOH HOH . E 5 HOH A 69 569 119 HOH HOH . E 5 HOH A 70 570 54 HOH HOH . E 5 HOH A 71 571 143 HOH HOH . E 5 HOH A 72 572 38 HOH HOH . E 5 HOH A 73 573 49 HOH HOH . E 5 HOH A 74 574 73 HOH HOH . E 5 HOH A 75 575 97 HOH HOH . E 5 HOH A 76 576 58 HOH HOH . E 5 HOH A 77 577 146 HOH HOH . E 5 HOH A 78 578 82 HOH HOH . E 5 HOH A 79 579 126 HOH HOH . E 5 HOH A 80 580 102 HOH HOH . E 5 HOH A 81 581 122 HOH HOH . E 5 HOH A 82 582 62 HOH HOH . E 5 HOH A 83 583 10 HOH HOH . E 5 HOH A 84 584 11 HOH HOH . E 5 HOH A 85 585 50 HOH HOH . E 5 HOH A 86 586 40 HOH HOH . E 5 HOH A 87 587 47 HOH HOH . E 5 HOH A 88 588 111 HOH HOH . E 5 HOH A 89 589 48 HOH HOH . E 5 HOH A 90 590 61 HOH HOH . E 5 HOH A 91 591 81 HOH HOH . E 5 HOH A 92 592 23 HOH HOH . E 5 HOH A 93 593 44 HOH HOH . E 5 HOH A 94 594 129 HOH HOH . E 5 HOH A 95 595 109 HOH HOH . E 5 HOH A 96 596 16 HOH HOH . E 5 HOH A 97 597 9 HOH HOH . E 5 HOH A 98 598 85 HOH HOH . E 5 HOH A 99 599 65 HOH HOH . E 5 HOH A 100 600 139 HOH HOH . E 5 HOH A 101 601 51 HOH HOH . E 5 HOH A 102 602 12 HOH HOH . E 5 HOH A 103 603 112 HOH HOH . E 5 HOH A 104 604 20 HOH HOH . E 5 HOH A 105 605 8 HOH HOH . E 5 HOH A 106 606 74 HOH HOH . E 5 HOH A 107 607 131 HOH HOH . E 5 HOH A 108 608 104 HOH HOH . E 5 HOH A 109 609 123 HOH HOH . E 5 HOH A 110 610 120 HOH HOH . E 5 HOH A 111 611 29 HOH HOH . E 5 HOH A 112 612 56 HOH HOH . E 5 HOH A 113 613 70 HOH HOH . E 5 HOH A 114 614 64 HOH HOH . E 5 HOH A 115 615 27 HOH HOH . E 5 HOH A 116 616 46 HOH HOH . E 5 HOH A 117 617 116 HOH HOH . E 5 HOH A 118 618 53 HOH HOH . E 5 HOH A 119 619 145 HOH HOH . E 5 HOH A 120 620 115 HOH HOH . E 5 HOH A 121 621 60 HOH HOH . E 5 HOH A 122 622 32 HOH HOH . E 5 HOH A 123 623 132 HOH HOH . E 5 HOH A 124 624 34 HOH HOH . E 5 HOH A 125 625 4 HOH HOH . E 5 HOH A 126 626 125 HOH HOH . E 5 HOH A 127 627 80 HOH HOH . E 5 HOH A 128 628 118 HOH HOH . E 5 HOH A 129 629 89 HOH HOH . E 5 HOH A 130 630 69 HOH HOH . E 5 HOH A 131 631 136 HOH HOH . E 5 HOH A 132 632 30 HOH HOH . E 5 HOH A 133 633 142 HOH HOH . E 5 HOH A 134 634 79 HOH HOH . E 5 HOH A 135 635 108 HOH HOH . E 5 HOH A 136 636 121 HOH HOH . E 5 HOH A 137 637 63 HOH HOH . E 5 HOH A 138 638 134 HOH HOH . E 5 HOH A 139 639 107 HOH HOH . E 5 HOH A 140 640 86 HOH HOH . E 5 HOH A 141 641 141 HOH HOH . E 5 HOH A 142 642 36 HOH HOH . E 5 HOH A 143 643 114 HOH HOH . E 5 HOH A 144 644 103 HOH HOH . E 5 HOH A 145 645 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 38.402 -18.222 11.93 1 9.68 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 38.785 -18.962 10.854 1 10.78 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 38.969 -18.375 9.778 1 10.76 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 38.928 -20.335 10.925 1 11.01 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 38.779 -21.05 12.045 1 11.66 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 38.852 -22.326 12.059 1 11.09 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 38.342 -20.331 13.258 1 9.85 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 38.209 -20.946 14.458 1 10.21 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 37.696 -20.273 15.553 1 9.48 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 37.402 -20.895 16.774 1 9.39 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 36.961 -20.187 17.865 1 9.76 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 36.618 -20.901 19.161 1 10.21 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 36.73 -18.758 17.714 1 10.09 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 36.19 -17.95 18.872 1 10.67 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 36.992 -18.13 16.517 1 9.62 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 37.482 -18.825 15.423 1 9.77 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 37.782 -18.168 14.212 1 9.56 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 38.175 -18.864 13.103 1 10.05 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 37.587 -16.71 14.065 1 9.19 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 36.178 -16.252 13.838 1 9.18 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 35.788 -16.709 12.547 1 8.86 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 36.082 -14.709 13.867 1 8.64 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 36.906 -14.158 12.816 1 8.87 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 36.533 -14.11 15.196 1 8.63 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 36.213 -14.972 16.282 1 9.15 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 35.894 -12.726 15.422 1 8.52 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 34.492 -12.794 15.536 1 8.55 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 33.698 -12.765 16.922 1 9.47 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 33.911 -14.157 17.516 1 10.15 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 32.258 -12.508 16.551 1 9.8 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 34.329 -11.697 17.786 1 8.99 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #