data_6M2I # _model_server_result.job_id NNdhclvnh2WrJ7JYG-seUg _model_server_result.datetime_utc '2024-10-10 03:25:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":409}' # _entry.id 6M2I # _exptl.entry_id 6M2I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 17 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M2I _cell.length_a 123.751 _cell.length_b 206.684 _cell.length_c 91.489 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 45.7445 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N ? 5 Y N N ? 5 Z N N ? 5 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 129 A GLU 129 1_555 A N MSE 130 A MSE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 130 A MSE 130 1_555 A N ALA 131 A ALA 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 A C PHE 276 A PHE 276 1_555 A N MSE 277 A MSE 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 277 A MSE 277 1_555 A N TRP 278 A TRP 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale5 A C ARG 333 A ARG 333 1_555 A N MSE 334 A MSE 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 334 A MSE 334 1_555 A N LEU 335 A LEU 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C GLN 66 B GLN 66 1_555 B N MSE 67 B MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C MSE 67 B MSE 67 1_555 B N TYR 68 B TYR 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale9 B C ALA 71 B ALA 71 1_555 B N MSE 72 B MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 B C ARG 148 B ARG 148 1_555 B N MSE 149 B MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 B C MSE 149 B MSE 149 1_555 B N ARG 150 B ARG 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 B C VAL 261 B VAL 261 1_555 B N MSE 262 B MSE 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 B C MSE 262 B MSE 262 1_555 B N PHE 263 B PHE 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 B C ARG 277 B ARG 277 1_555 B N MSE 278 B MSE 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale15 B C MSE 278 B MSE 278 1_555 B N ASP 279 B ASP 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale16 B C GLY 367 B GLY 367 1_555 B N MSE 368 B MSE 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale17 B C MSE 368 B MSE 368 1_555 B N ARG 369 B ARG 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 A OD2 ASP 36 A ASP 36 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc2 A NE2 HIS 38 A HIS 38 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc3 A NE2 HIS 213 A HIS 213 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc4 A OE2 GLU 267 A GLU 267 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc5 A OD1 ASP 340 A ASP 340 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc6 B OD2 ASP 25 B ASP 25 1_555 S FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc7 B NE2 HIS 27 B HIS 27 1_555 S FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc8 B NE2 HIS 211 B HIS 211 1_555 S FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc9 B OE2 GLU 265 B GLU 265 1_555 R FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc10 B OE1 GLU 265 B GLU 265 1_555 S FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc11 B OD2 ASP 337 B ASP 337 1_555 R FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc12 B OD1 ASP 337 B ASP 337 1_555 S FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc13 B ND1 HIS 340 B HIS 340 1_555 R FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc14 R FE FE . B FE 401 1_555 Z O2 EDO . B EDO 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc15 R FE FE . B FE 401 1_555 Z O1 EDO . B EDO 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc16 R FE FE . B FE 401 1_555 CA O HOH . B HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc17 S FE FE . B FE 402 1_555 CA O HOH . B HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6M2I _atom_sites.fract_transf_matrix[1][1] 0.008081 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004838 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 1 ZN ZN . D 4 SO4 A 1 402 1 SO4 SO4 . E 4 SO4 A 1 403 2 SO4 SO4 . F 4 SO4 A 1 404 3 SO4 SO4 . G 4 SO4 A 1 405 5 SO4 SO4 . H 5 EDO A 1 406 4 EDO EDO . I 5 EDO A 1 407 5 EDO EDO . J 5 EDO A 1 408 6 EDO EDO . K 5 EDO A 1 409 7 EDO EDO . L 5 EDO A 1 410 10 EDO EDO . M 5 EDO A 1 411 11 EDO EDO . N 5 EDO A 1 412 12 EDO EDO . O 5 EDO A 1 413 14 EDO EDO . P 5 EDO A 1 414 15 EDO EDO . Q 5 EDO A 1 415 16 EDO EDO . R 6 FE B 1 401 2 FE FE . S 6 FE B 1 402 3 FE FE . T 4 SO4 B 1 403 4 SO4 SO4 . U 5 EDO B 1 404 1 EDO EDO . V 5 EDO B 1 405 2 EDO EDO . W 5 EDO B 1 406 3 EDO EDO . X 5 EDO B 1 407 8 EDO EDO . Y 5 EDO B 1 408 9 EDO EDO . Z 5 EDO B 1 409 13 EDO EDO . AA 5 EDO B 1 410 17 EDO EDO . BA 7 HOH A 1 501 79 HOH HOH . BA 7 HOH A 2 502 118 HOH HOH . BA 7 HOH A 3 503 78 HOH HOH . BA 7 HOH A 4 504 41 HOH HOH . BA 7 HOH A 5 505 2 HOH HOH . BA 7 HOH A 6 506 123 HOH HOH . BA 7 HOH A 7 507 105 HOH HOH . BA 7 HOH A 8 508 53 HOH HOH . BA 7 HOH A 9 509 117 HOH HOH . BA 7 HOH A 10 510 38 HOH HOH . BA 7 HOH A 11 511 89 HOH HOH . BA 7 HOH A 12 512 46 HOH HOH . BA 7 HOH A 13 513 97 HOH HOH . BA 7 HOH A 14 514 15 HOH HOH . BA 7 HOH A 15 515 34 HOH HOH . BA 7 HOH A 16 516 115 HOH HOH . BA 7 HOH A 17 517 18 HOH HOH . BA 7 HOH A 18 518 121 HOH HOH . BA 7 HOH A 19 519 88 HOH HOH . BA 7 HOH A 20 520 72 HOH HOH . BA 7 HOH A 21 521 71 HOH HOH . BA 7 HOH A 22 522 13 HOH HOH . BA 7 HOH A 23 523 100 HOH HOH . BA 7 HOH A 24 524 25 HOH HOH . BA 7 HOH A 25 525 81 HOH HOH . BA 7 HOH A 26 526 44 HOH HOH . BA 7 HOH A 27 527 45 HOH HOH . BA 7 HOH A 28 528 16 HOH HOH . BA 7 HOH A 29 529 76 HOH HOH . BA 7 HOH A 30 530 4 HOH HOH . BA 7 HOH A 31 531 55 HOH HOH . BA 7 HOH A 32 532 9 HOH HOH . BA 7 HOH A 33 533 11 HOH HOH . BA 7 HOH A 34 534 110 HOH HOH . BA 7 HOH A 35 535 60 HOH HOH . BA 7 HOH A 36 536 106 HOH HOH . BA 7 HOH A 37 537 108 HOH HOH . BA 7 HOH A 38 538 57 HOH HOH . BA 7 HOH A 39 539 73 HOH HOH . BA 7 HOH A 40 540 101 HOH HOH . BA 7 HOH A 41 541 8 HOH HOH . BA 7 HOH A 42 542 85 HOH HOH . BA 7 HOH A 43 543 61 HOH HOH . BA 7 HOH A 44 544 26 HOH HOH . BA 7 HOH A 45 545 27 HOH HOH . BA 7 HOH A 46 546 54 HOH HOH . BA 7 HOH A 47 547 56 HOH HOH . BA 7 HOH A 48 548 69 HOH HOH . BA 7 HOH A 49 549 23 HOH HOH . BA 7 HOH A 50 550 95 HOH HOH . BA 7 HOH A 51 551 65 HOH HOH . BA 7 HOH A 52 552 1 HOH HOH . BA 7 HOH A 53 553 68 HOH HOH . BA 7 HOH A 54 554 80 HOH HOH . BA 7 HOH A 55 555 84 HOH HOH . BA 7 HOH A 56 556 14 HOH HOH . BA 7 HOH A 57 557 90 HOH HOH . BA 7 HOH A 58 558 70 HOH HOH . BA 7 HOH A 59 559 3 HOH HOH . BA 7 HOH A 60 560 24 HOH HOH . BA 7 HOH A 61 561 82 HOH HOH . BA 7 HOH A 62 562 21 HOH HOH . BA 7 HOH A 63 563 87 HOH HOH . BA 7 HOH A 64 564 49 HOH HOH . BA 7 HOH A 65 565 99 HOH HOH . BA 7 HOH A 66 566 6 HOH HOH . BA 7 HOH A 67 567 98 HOH HOH . BA 7 HOH A 68 568 116 HOH HOH . BA 7 HOH A 69 569 47 HOH HOH . CA 7 HOH B 1 501 112 HOH HOH . CA 7 HOH B 2 502 50 HOH HOH . CA 7 HOH B 3 503 111 HOH HOH . CA 7 HOH B 4 504 51 HOH HOH . CA 7 HOH B 5 505 32 HOH HOH . CA 7 HOH B 6 506 103 HOH HOH . CA 7 HOH B 7 507 63 HOH HOH . CA 7 HOH B 8 508 75 HOH HOH . CA 7 HOH B 9 509 40 HOH HOH . CA 7 HOH B 10 510 5 HOH HOH . CA 7 HOH B 11 511 122 HOH HOH . CA 7 HOH B 12 512 39 HOH HOH . CA 7 HOH B 13 513 107 HOH HOH . CA 7 HOH B 14 514 119 HOH HOH . CA 7 HOH B 15 515 42 HOH HOH . CA 7 HOH B 16 516 10 HOH HOH . CA 7 HOH B 17 517 62 HOH HOH . CA 7 HOH B 18 518 96 HOH HOH . CA 7 HOH B 19 519 58 HOH HOH . CA 7 HOH B 20 520 114 HOH HOH . CA 7 HOH B 21 521 28 HOH HOH . CA 7 HOH B 22 522 37 HOH HOH . CA 7 HOH B 23 523 43 HOH HOH . CA 7 HOH B 24 524 66 HOH HOH . CA 7 HOH B 25 525 64 HOH HOH . CA 7 HOH B 26 526 77 HOH HOH . CA 7 HOH B 27 527 12 HOH HOH . CA 7 HOH B 28 528 48 HOH HOH . CA 7 HOH B 29 529 113 HOH HOH . CA 7 HOH B 30 530 30 HOH HOH . CA 7 HOH B 31 531 91 HOH HOH . CA 7 HOH B 32 532 109 HOH HOH . CA 7 HOH B 33 533 29 HOH HOH . CA 7 HOH B 34 534 35 HOH HOH . CA 7 HOH B 35 535 31 HOH HOH . CA 7 HOH B 36 536 33 HOH HOH . CA 7 HOH B 37 537 120 HOH HOH . CA 7 HOH B 38 538 74 HOH HOH . CA 7 HOH B 39 539 124 HOH HOH . CA 7 HOH B 40 540 102 HOH HOH . CA 7 HOH B 41 541 36 HOH HOH . CA 7 HOH B 42 542 59 HOH HOH . CA 7 HOH B 43 543 83 HOH HOH . CA 7 HOH B 44 544 22 HOH HOH . CA 7 HOH B 45 545 17 HOH HOH . CA 7 HOH B 46 546 94 HOH HOH . CA 7 HOH B 47 547 7 HOH HOH . CA 7 HOH B 48 548 20 HOH HOH . CA 7 HOH B 49 549 93 HOH HOH . CA 7 HOH B 50 550 86 HOH HOH . CA 7 HOH B 51 551 67 HOH HOH . CA 7 HOH B 52 552 104 HOH HOH . CA 7 HOH B 53 553 52 HOH HOH . CA 7 HOH B 54 554 19 HOH HOH . CA 7 HOH B 55 555 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . Z 5 -8.238 31.694 0.587 1 47.8 ? C1 EDO 409 B 1 HETATM 2 O O1 EDO . . . Z 5 -8.738 30.466 1.127 1 51.39 ? O1 EDO 409 B 1 HETATM 3 C C2 EDO . . . Z 5 -8.863 31.914 -0.788 1 52.31 ? C2 EDO 409 B 1 HETATM 4 O O2 EDO . . . Z 5 -8.289 31.045 -1.778 1 42.52 ? O2 EDO 409 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #