data_6M2L # _model_server_result.job_id H05Z9dafx3SMPip1zp-2jw _model_server_result.datetime_utc '2024-11-16 11:36:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m2l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 6M2L # _exptl.entry_id 6M2L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.432 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3R,4S,5R,6R)-6-(hydroxymethyl)-4-undec-10-enoxy-oxane-2,3,5-triol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M2L _cell.length_a 102.432 _cell.length_b 102.432 _cell.length_c 248.305 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M2L _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 61 A CYS 61 1_555 A SG CYS 70 A CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 61 B CYS 61 1_555 B SG CYS 70 B CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C17 H32 O6' _chem_comp.formula_weight 332.432 _chem_comp.id F00 _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3R,4S,5R,6R)-6-(hydroxymethyl)-4-undec-10-enoxy-oxane-2,3,5-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F00 sing 83 n n C1 C2 F00 sing 84 n n C1 O5 F00 sing 85 n n O2 C2 F00 sing 86 n n C2 C3 F00 sing 87 n n O5 C5 F00 sing 88 n n O6 C6 F00 sing 89 n n C3 O3 F00 sing 90 n n C3 C4 F00 sing 91 n n C5 C6 F00 sing 92 n n C5 C4 F00 sing 93 n n O3 CAM F00 sing 94 n n C4 O4 F00 sing 95 n n CAM CAN F00 sing 96 n n CAN CAO F00 sing 97 n n CAO CAP F00 sing 98 n n CAP CAQ F00 sing 99 n n CAQ CAR F00 sing 100 n n CAR CAS F00 sing 101 n n CAS CAT F00 sing 102 n n CAT CAU F00 sing 103 n n CAV CAU F00 sing 104 n n CAV CAW F00 doub 105 n n C4 H1 F00 sing 106 n n C5 H2 F00 sing 107 n n C6 H3 F00 sing 108 n n C6 H4 F00 sing 109 n n C3 H5 F00 sing 110 n n CAM H6 F00 sing 111 n n CAM H7 F00 sing 112 n n CAN H8 F00 sing 113 n n CAN H9 F00 sing 114 n n CAO H10 F00 sing 115 n n CAO H11 F00 sing 116 n n CAP H12 F00 sing 117 n n CAP H13 F00 sing 118 n n CAQ H14 F00 sing 119 n n CAQ H15 F00 sing 120 n n CAR H16 F00 sing 121 n n CAR H17 F00 sing 122 n n CAS H18 F00 sing 123 n n CAS H19 F00 sing 124 n n CAT H20 F00 sing 125 n n CAT H21 F00 sing 126 n n CAU H22 F00 sing 127 n n CAU H23 F00 sing 128 n n CAV H24 F00 sing 129 n n CAW H25 F00 sing 130 n n CAW H26 F00 sing 131 n n C1 H27 F00 sing 132 n n O1 H28 F00 sing 133 n n C2 H29 F00 sing 134 n n O2 H30 F00 sing 135 n n O4 H31 F00 sing 136 n n O6 H32 F00 sing 137 n n # _atom_sites.entry_id 6M2L _atom_sites.fract_transf_matrix[1][1] 0.009763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F00 A 1 601 506 F00 DRG . D 2 F00 B 1 601 506 F00 DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 F00 . . . C 2 -26.423 -45.771 -0.702 1 83.25 ? C4 F00 601 A 1 HETATM 2 C C5 F00 . . . C 2 -27.63 -46.464 -1.318 1 83.55 ? C5 F00 601 A 1 HETATM 3 C C6 F00 . . . C 2 -28.906 -45.947 -0.721 1 83.25 ? C6 F00 601 A 1 HETATM 4 C C3 F00 . . . C 2 -25.241 -46.485 -1.326 1 82.96 ? C3 F00 601 A 1 HETATM 5 C CAM F00 . . . C 2 -23.821 -46.489 0.691 1 82.26 ? CAM F00 601 A 1 HETATM 6 C CAN F00 . . . C 2 -22.386 -47.044 1.007 1 83.46 ? CAN F00 601 A 1 HETATM 7 C CAO F00 . . . C 2 -22.318 -47.57 2.453 1 82.42 ? CAO F00 601 A 1 HETATM 8 C CAP F00 . . . C 2 -20.961 -47.209 3.131 1 82.79 ? CAP F00 601 A 1 HETATM 9 C CAQ F00 . . . C 2 -20.706 -48.117 4.337 1 83.38 ? CAQ F00 601 A 1 HETATM 10 C CAR F00 . . . C 2 -20.658 -47.321 5.635 1 83.67 ? CAR F00 601 A 1 HETATM 11 C CAS F00 . . . C 2 -22.074 -47.189 6.17 1 84.16 ? CAS F00 601 A 1 HETATM 12 C CAT F00 . . . C 2 -22.05 -46.492 7.519 1 86.17 ? CAT F00 601 A 1 HETATM 13 C CAU F00 . . . C 2 -23.27 -46.899 8.326 1 86.27 ? CAU F00 601 A 1 HETATM 14 C CAV F00 . . . C 2 -24.571 -46.264 7.7 1 88.13 ? CAV F00 601 A 1 HETATM 15 C CAW F00 . . . C 2 -25.565 -45.784 8.464 1 87.56 ? CAW F00 601 A 1 HETATM 16 C C1 F00 . . . C 2 -26.506 -46.324 -3.49 1 81.3 ? C1 F00 601 A 1 HETATM 17 O O1 F00 . . . C 2 -26.519 -47.575 -4.05 1 80.69 ? O1 F00 601 A 1 HETATM 18 C C2 F00 . . . C 2 -25.208 -46.054 -2.754 1 81.83 ? C2 F00 601 A 1 HETATM 19 O O2 F00 . . . C 2 -24.15 -46.766 -3.383 1 82.72 ? O2 F00 601 A 1 HETATM 20 O O3 F00 . . . C 2 -23.973 -46.235 -0.723 1 82.77 ? O3 F00 601 A 1 HETATM 21 O O4 F00 . . . C 2 -26.463 -45.94 0.645 1 84.9 ? O4 F00 601 A 1 HETATM 22 O O5 F00 . . . C 2 -27.685 -46.188 -2.698 1 82.71 ? O5 F00 601 A 1 HETATM 23 O O6 F00 . . . C 2 -29.981 -46.394 -1.512 1 83.21 ? O6 F00 601 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #