data_6M2N
#
_model_server_result.job_id            nyrbIfuyLD38evCCyWKuPw 
_model_server_result.datetime_utc      '2024-11-04 23:09:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6m2n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    6M2N 
#
_exptl.entry_id    6M2N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              270.237 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5,6,7-trihydroxy-2-phenyl-4H-chromen-4-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         74.09 
_cell.angle_beta          78.27 
_cell.angle_gamma         66.1 
_cell.entry_id            6M2N 
_cell.length_a            63.957 
_cell.length_b            67.942 
_cell.length_c            95.046 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6M2N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I,K 1 1 
B,D,F,H,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C15 H10 O5' 
_chem_comp.formula_weight    270.237 
_chem_comp.id                3WL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5,6,7-trihydroxy-2-phenyl-4H-chromen-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Baicalein 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 C 3WL doub 1 n y 
C5 C4 3WL sing 2 n y 
C C1 3WL sing 3 n y 
C4 C3 3WL doub 4 n y 
C1 C2 3WL doub 5 n y 
C3 C2 3WL sing 6 n y 
C3 C6 3WL sing 7 n n 
C7 C6 3WL doub 8 n n 
C7 C8 3WL sing 9 n n 
O C8 3WL doub 10 n n 
C6 O1 3WL sing 11 n n 
C8 C9 3WL sing 12 n n 
O1 C14 3WL sing 13 n n 
C9 C14 3WL doub 14 n y 
C9 C10 3WL sing 15 n y 
O4 C10 3WL sing 16 n n 
C14 C13 3WL sing 17 n y 
C10 C11 3WL doub 18 n y 
C13 C12 3WL doub 19 n y 
C11 C12 3WL sing 20 n y 
C11 O3 3WL sing 21 n n 
C12 O2 3WL sing 22 n n 
C4 H1 3WL sing 23 n n 
C5 H2 3WL sing 24 n n 
C7 H3 3WL sing 25 n n 
C13 H4 3WL sing 26 n n 
O2 H5 3WL sing 27 n n 
O3 H6 3WL sing 28 n n 
O4 H7 3WL sing 29 n n 
C2 H8 3WL sing 30 n n 
C1 H9 3WL sing 31 n n 
C H10 3WL sing 32 n n 
#
_atom_sites.entry_id                     6M2N 
_atom_sites.fract_transf_matrix[1][1]    0.015636 
_atom_sites.fract_transf_matrix[1][2]    -0.006929 
_atom_sites.fract_transf_matrix[1][3]    -0.001804 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016099 
_atom_sites.fract_transf_matrix[2][3]    -0.003531 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011001 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 3WL A 1 401 1 3WL LIG . 
F 2 3WL B 1 401 2 3WL LIG . 
G 2 3WL C 1 401 3 3WL LIG . 
H 2 3WL D 1 401 4 3WL LIG . 
I 3 HOH A 1 501 167 HOH HOH . 
I 3 HOH A 2 502 72 HOH HOH . 
I 3 HOH A 3 503 161 HOH HOH . 
I 3 HOH A 4 504 65 HOH HOH . 
I 3 HOH A 5 505 107 HOH HOH . 
I 3 HOH A 6 506 57 HOH HOH . 
I 3 HOH A 7 507 37 HOH HOH . 
I 3 HOH A 8 508 38 HOH HOH . 
I 3 HOH A 9 509 84 HOH HOH . 
I 3 HOH A 10 510 61 HOH HOH . 
I 3 HOH A 11 511 18 HOH HOH . 
I 3 HOH A 12 512 71 HOH HOH . 
I 3 HOH A 13 513 2 HOH HOH . 
I 3 HOH A 14 514 19 HOH HOH . 
I 3 HOH A 15 515 109 HOH HOH . 
I 3 HOH A 16 516 13 HOH HOH . 
I 3 HOH A 17 517 104 HOH HOH . 
I 3 HOH A 18 518 120 HOH HOH . 
I 3 HOH A 19 519 74 HOH HOH . 
I 3 HOH A 20 520 147 HOH HOH . 
I 3 HOH A 21 521 101 HOH HOH . 
I 3 HOH A 22 522 106 HOH HOH . 
I 3 HOH A 23 523 168 HOH HOH . 
I 3 HOH A 24 524 4 HOH HOH . 
I 3 HOH A 25 525 144 HOH HOH . 
I 3 HOH A 26 526 7 HOH HOH . 
I 3 HOH A 27 527 49 HOH HOH . 
I 3 HOH A 28 528 166 HOH HOH . 
I 3 HOH A 29 529 55 HOH HOH . 
I 3 HOH A 30 530 59 HOH HOH . 
I 3 HOH A 31 531 9 HOH HOH . 
I 3 HOH A 32 532 1 HOH HOH . 
I 3 HOH A 33 533 56 HOH HOH . 
I 3 HOH A 34 534 119 HOH HOH . 
I 3 HOH A 35 535 22 HOH HOH . 
I 3 HOH A 36 536 118 HOH HOH . 
I 3 HOH A 37 537 128 HOH HOH . 
I 3 HOH A 38 538 163 HOH HOH . 
I 3 HOH A 39 539 108 HOH HOH . 
I 3 HOH A 40 540 96 HOH HOH . 
I 3 HOH A 41 541 36 HOH HOH . 
I 3 HOH A 42 542 138 HOH HOH . 
I 3 HOH A 43 543 23 HOH HOH . 
I 3 HOH A 44 544 143 HOH HOH . 
I 3 HOH A 45 545 132 HOH HOH . 
I 3 HOH A 46 546 139 HOH HOH . 
I 3 HOH A 47 547 103 HOH HOH . 
I 3 HOH A 48 548 171 HOH HOH . 
I 3 HOH A 49 549 142 HOH HOH . 
I 3 HOH A 50 550 117 HOH HOH . 
I 3 HOH A 51 551 50 HOH HOH . 
I 3 HOH A 52 552 91 HOH HOH . 
I 3 HOH A 53 553 137 HOH HOH . 
J 3 HOH B 1 501 5 HOH HOH . 
J 3 HOH B 2 502 150 HOH HOH . 
J 3 HOH B 3 503 78 HOH HOH . 
J 3 HOH B 4 504 124 HOH HOH . 
J 3 HOH B 5 505 155 HOH HOH . 
J 3 HOH B 6 506 114 HOH HOH . 
J 3 HOH B 7 507 33 HOH HOH . 
J 3 HOH B 8 508 34 HOH HOH . 
J 3 HOH B 9 509 26 HOH HOH . 
J 3 HOH B 10 510 12 HOH HOH . 
J 3 HOH B 11 511 125 HOH HOH . 
J 3 HOH B 12 512 20 HOH HOH . 
J 3 HOH B 13 513 136 HOH HOH . 
J 3 HOH B 14 514 14 HOH HOH . 
J 3 HOH B 15 515 11 HOH HOH . 
J 3 HOH B 16 516 165 HOH HOH . 
J 3 HOH B 17 517 88 HOH HOH . 
J 3 HOH B 18 518 17 HOH HOH . 
J 3 HOH B 19 519 39 HOH HOH . 
J 3 HOH B 20 520 28 HOH HOH . 
J 3 HOH B 21 521 146 HOH HOH . 
J 3 HOH B 22 522 54 HOH HOH . 
J 3 HOH B 23 523 6 HOH HOH . 
J 3 HOH B 24 524 159 HOH HOH . 
J 3 HOH B 25 525 32 HOH HOH . 
J 3 HOH B 26 526 40 HOH HOH . 
J 3 HOH B 27 527 130 HOH HOH . 
J 3 HOH B 28 528 170 HOH HOH . 
J 3 HOH B 29 529 62 HOH HOH . 
J 3 HOH B 30 530 102 HOH HOH . 
J 3 HOH B 31 531 60 HOH HOH . 
J 3 HOH B 32 532 160 HOH HOH . 
J 3 HOH B 33 533 123 HOH HOH . 
J 3 HOH B 34 534 127 HOH HOH . 
J 3 HOH B 35 535 99 HOH HOH . 
J 3 HOH B 36 536 113 HOH HOH . 
J 3 HOH B 37 537 105 HOH HOH . 
J 3 HOH B 38 538 53 HOH HOH . 
J 3 HOH B 39 539 87 HOH HOH . 
J 3 HOH B 40 540 172 HOH HOH . 
J 3 HOH B 41 541 85 HOH HOH . 
J 3 HOH B 42 542 83 HOH HOH . 
J 3 HOH B 43 543 141 HOH HOH . 
J 3 HOH B 44 544 81 HOH HOH . 
J 3 HOH B 45 545 98 HOH HOH . 
J 3 HOH B 46 546 154 HOH HOH . 
J 3 HOH B 47 547 75 HOH HOH . 
J 3 HOH B 48 548 73 HOH HOH . 
J 3 HOH B 49 549 100 HOH HOH . 
J 3 HOH B 50 550 152 HOH HOH . 
J 3 HOH B 51 551 169 HOH HOH . 
J 3 HOH B 52 552 64 HOH HOH . 
J 3 HOH B 53 553 90 HOH HOH . 
K 3 HOH C 1 501 79 HOH HOH . 
K 3 HOH C 2 502 121 HOH HOH . 
K 3 HOH C 3 503 63 HOH HOH . 
K 3 HOH C 4 504 43 HOH HOH . 
K 3 HOH C 5 505 44 HOH HOH . 
K 3 HOH C 6 506 31 HOH HOH . 
K 3 HOH C 7 507 30 HOH HOH . 
K 3 HOH C 8 508 70 HOH HOH . 
K 3 HOH C 9 509 8 HOH HOH . 
K 3 HOH C 10 510 145 HOH HOH . 
K 3 HOH C 11 511 25 HOH HOH . 
K 3 HOH C 12 512 69 HOH HOH . 
K 3 HOH C 13 513 94 HOH HOH . 
K 3 HOH C 14 514 134 HOH HOH . 
K 3 HOH C 15 515 41 HOH HOH . 
K 3 HOH C 16 516 153 HOH HOH . 
K 3 HOH C 17 517 122 HOH HOH . 
K 3 HOH C 18 518 158 HOH HOH . 
K 3 HOH C 19 519 48 HOH HOH . 
K 3 HOH C 20 520 42 HOH HOH . 
K 3 HOH C 21 521 27 HOH HOH . 
K 3 HOH C 22 522 135 HOH HOH . 
K 3 HOH C 23 523 24 HOH HOH . 
K 3 HOH C 24 524 157 HOH HOH . 
K 3 HOH C 25 525 35 HOH HOH . 
K 3 HOH C 26 526 129 HOH HOH . 
K 3 HOH C 27 527 149 HOH HOH . 
K 3 HOH C 28 528 51 HOH HOH . 
K 3 HOH C 29 529 95 HOH HOH . 
K 3 HOH C 30 530 162 HOH HOH . 
K 3 HOH C 31 531 131 HOH HOH . 
K 3 HOH C 32 532 115 HOH HOH . 
K 3 HOH C 33 533 140 HOH HOH . 
K 3 HOH C 34 534 45 HOH HOH . 
K 3 HOH C 35 535 89 HOH HOH . 
K 3 HOH C 36 536 148 HOH HOH . 
K 3 HOH C 37 537 97 HOH HOH . 
K 3 HOH C 38 538 68 HOH HOH . 
K 3 HOH C 39 539 16 HOH HOH . 
L 3 HOH D 1 501 112 HOH HOH . 
L 3 HOH D 2 502 3 HOH HOH . 
L 3 HOH D 3 503 111 HOH HOH . 
L 3 HOH D 4 504 67 HOH HOH . 
L 3 HOH D 5 505 151 HOH HOH . 
L 3 HOH D 6 506 29 HOH HOH . 
L 3 HOH D 7 507 80 HOH HOH . 
L 3 HOH D 8 508 82 HOH HOH . 
L 3 HOH D 9 509 110 HOH HOH . 
L 3 HOH D 10 510 76 HOH HOH . 
L 3 HOH D 11 511 58 HOH HOH . 
L 3 HOH D 12 512 66 HOH HOH . 
L 3 HOH D 13 513 93 HOH HOH . 
L 3 HOH D 14 514 15 HOH HOH . 
L 3 HOH D 15 515 10 HOH HOH . 
L 3 HOH D 16 516 46 HOH HOH . 
L 3 HOH D 17 517 21 HOH HOH . 
L 3 HOH D 18 518 156 HOH HOH . 
L 3 HOH D 19 519 47 HOH HOH . 
L 3 HOH D 20 520 133 HOH HOH . 
L 3 HOH D 21 521 116 HOH HOH . 
L 3 HOH D 22 522 86 HOH HOH . 
L 3 HOH D 23 523 92 HOH HOH . 
L 3 HOH D 24 524 52 HOH HOH . 
L 3 HOH D 25 525 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 3WL . . . E 2 -32.824 -67.07 38.188 1 44.3 ? C4 3WL 401 A 1 
HETATM 2 C C5 3WL . . . E 2 -33.117 -68.16 37.392 1 43.67 ? C5 3WL 401 A 1 
HETATM 3 C C6 3WL . . . E 2 -32.957 -65.868 40.363 1 51.12 ? C6 3WL 401 A 1 
HETATM 4 C C7 3WL . . . E 2 -31.993 -64.965 40.1 1 46.5 ? C7 3WL 401 A 1 
HETATM 5 C C8 3WL . . . E 2 -31.732 -63.85 40.962 1 43.21 ? C8 3WL 401 A 1 
HETATM 6 C C10 3WL . . . E 2 -32.487 -62.72 43.083 1 43.77 ? C10 3WL 401 A 1 
HETATM 7 C C13 3WL . . . E 2 -34.439 -64.702 43.421 1 45.28 ? C13 3WL 401 A 1 
HETATM 8 O O 3WL . . . E 2 -30.831 -63.018 40.722 1 40.86 ? O 3WL 401 A 1 
HETATM 9 C C9 3WL . . . E 2 -32.594 -63.754 42.129 1 51.53 ? C9 3WL 401 A 1 
HETATM 10 C C14 3WL . . . E 2 -33.582 -64.722 42.34 1 48.53 ? C14 3WL 401 A 1 
HETATM 11 C C12 3WL . . . E 2 -34.313 -63.674 44.339 1 45.59 ? C12 3WL 401 A 1 
HETATM 12 O O2 3WL . . . E 2 -35.131 -63.608 45.416 1 45.68 ? O2 3WL 401 A 1 
HETATM 13 C C11 3WL . . . E 2 -33.336 -62.682 44.166 1 46.82 ? C11 3WL 401 A 1 
HETATM 14 O O3 3WL . . . E 2 -33.203 -61.662 45.063 1 48.65 ? O3 3WL 401 A 1 
HETATM 15 O O4 3WL . . . E 2 -31.553 -61.754 42.93 1 44.52 ? O4 3WL 401 A 1 
HETATM 16 O O1 3WL . . . E 2 -33.755 -65.764 41.461 1 43.75 ? O1 3WL 401 A 1 
HETATM 17 C C3 3WL . . . E 2 -33.259 -67.025 39.511 1 46.15 ? C3 3WL 401 A 1 
HETATM 18 C C2 3WL . . . E 2 -34.008 -68.094 40.004 1 51.7 ? C2 3WL 401 A 1 
HETATM 19 C C1 3WL . . . E 2 -34.291 -69.18 39.199 1 51.92 ? C1 3WL 401 A 1 
HETATM 20 C C 3WL . . . E 2 -33.848 -69.211 37.897 1 48.3 ? C 3WL 401 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#