data_6M2R # _model_server_result.job_id OkrzA47dMxfc7tJmtR6IEw _model_server_result.datetime_utc '2024-10-14 03:13:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 6M2R # _exptl.entry_id 6M2R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.562 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DECYL-BETA-D-MALTOPYRANOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M2R _cell.length_a 96.8 _cell.length_b 141.27 _cell.length_c 167.711 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A O GLY 18 A GLY 42 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc7 A OD1 ASN 287 A ASN 352 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc8 A O LEU 352 A LEU 417 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc9 A OG SER 356 A SER 421 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc10 I NA NA . A NA 706 1_555 P O HOH . A HOH 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc11 B O THR 22 L THR 22 1_555 O NA NA . L NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc12 B OG SER 101 L SER 101 1_555 N NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc13 B O GLY 102 L GLY 102 1_555 N NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? metalc ? metalc14 B OG1 THR 103 L THR 103 1_555 O NA NA . L NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? # _chem_comp.formula 'C22 H42 O11' _chem_comp.formula_weight 482.562 _chem_comp.id DMU _chem_comp.mon_nstd_flag . _chem_comp.name DECYL-BETA-D-MALTOPYRANOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DECYLMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 C37 DMU sing 191 n n C40 C43 DMU sing 192 n n C37 C34 DMU sing 193 n n C34 C31 DMU sing 194 n n C31 C28 DMU sing 195 n n C28 C25 DMU sing 196 n n C22 C25 DMU sing 197 n n C22 C19 DMU sing 198 n n O61 C57 DMU sing 199 n n O4 C7 DMU sing 200 n n C18 C19 DMU sing 201 n n C18 O16 DMU sing 202 n n O5 C6 DMU sing 203 n n O5 C4 DMU sing 204 n n C57 C4 DMU sing 205 n n C6 O16 DMU sing 206 n n C6 C1 DMU sing 207 n n C7 C5 DMU sing 208 n n C7 C8 DMU sing 209 n n C4 C3 DMU sing 210 n n O1 C10 DMU sing 211 n n O1 C9 DMU sing 212 n n C10 C5 DMU sing 213 n n C10 O7 DMU sing 214 n n C5 O3 DMU sing 215 n n O49 C1 DMU sing 216 n n C8 C9 DMU sing 217 n n C8 O2 DMU sing 218 n n C1 C2 DMU sing 219 n n C11 C9 DMU sing 220 n n C11 O6 DMU sing 221 n n C3 O7 DMU sing 222 n n C3 C2 DMU sing 223 n n C2 O55 DMU sing 224 n n C1 H1 DMU sing 225 n n C2 H2 DMU sing 226 n n C3 H3 DMU sing 227 n n C4 H4 DMU sing 228 n n C6 H5 DMU sing 229 n n C18 H6 DMU sing 230 n n C18 H7 DMU sing 231 n n C19 H8 DMU sing 232 n n C19 H9 DMU sing 233 n n C22 H10 DMU sing 234 n n C22 H11 DMU sing 235 n n C25 H12 DMU sing 236 n n C25 H13 DMU sing 237 n n C28 H14 DMU sing 238 n n C28 H15 DMU sing 239 n n C31 H16 DMU sing 240 n n C31 H17 DMU sing 241 n n C34 H18 DMU sing 242 n n C34 H19 DMU sing 243 n n C37 H20 DMU sing 244 n n C37 H21 DMU sing 245 n n C40 H22 DMU sing 246 n n C40 H23 DMU sing 247 n n C43 H24 DMU sing 248 n n C43 H25 DMU sing 249 n n C43 H26 DMU sing 250 n n O49 H27 DMU sing 251 n n O55 H28 DMU sing 252 n n C57 H29 DMU sing 253 n n C57 H30 DMU sing 254 n n O61 H31 DMU sing 255 n n C5 H32 DMU sing 256 n n C7 H33 DMU sing 257 n n C8 H34 DMU sing 258 n n C9 H35 DMU sing 259 n n C10 H36 DMU sing 260 n n O2 H37 DMU sing 261 n n O3 H38 DMU sing 262 n n O4 H39 DMU sing 263 n n C11 H40 DMU sing 264 n n C11 H41 DMU sing 265 n n O6 H42 DMU sing 266 n n # _atom_sites.entry_id 6M2R _atom_sites.fract_transf_matrix[1][1] 0.010331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DMU A 1 701 1 DMU DMU . E 5 Y01 A 1 702 1 Y01 Y01 . F 6 CLR A 1 703 1 CLR CLR . G 7 LNR A 1 704 1 LNR LNR . H 8 CL A 1 705 5 CL CL . I 9 NA A 1 706 1 NA NA . J 9 NA A 1 707 2 NA NA . K 10 D10 A 1 708 1 D10 D10 . L 10 D10 A 1 709 2 D10 D10 . M 10 D10 A 1 710 3 D10 D10 . N 9 NA L 1 301 3 NA NA . O 9 NA L 1 302 4 NA NA . P 11 HOH A 1 801 8 HOH HOH . P 11 HOH A 2 802 22 HOH HOH . P 11 HOH A 3 803 3 HOH HOH . P 11 HOH A 4 804 7 HOH HOH . P 11 HOH A 5 805 13 HOH HOH . P 11 HOH A 6 806 12 HOH HOH . P 11 HOH A 7 807 5 HOH HOH . P 11 HOH A 8 808 1 HOH HOH . P 11 HOH A 9 809 20 HOH HOH . P 11 HOH A 10 810 87 HOH HOH . P 11 HOH A 11 811 15 HOH HOH . P 11 HOH A 12 812 9 HOH HOH . P 11 HOH A 13 813 6 HOH HOH . P 11 HOH A 14 814 90 HOH HOH . P 11 HOH A 15 815 4 HOH HOH . P 11 HOH A 16 816 99 HOH HOH . P 11 HOH A 17 817 2 HOH HOH . P 11 HOH A 18 818 11 HOH HOH . P 11 HOH A 19 819 17 HOH HOH . P 11 HOH A 20 820 88 HOH HOH . P 11 HOH A 21 821 10 HOH HOH . P 11 HOH A 22 822 19 HOH HOH . P 11 HOH A 23 823 23 HOH HOH . P 11 HOH A 24 824 18 HOH HOH . P 11 HOH A 25 825 14 HOH HOH . P 11 HOH A 26 826 21 HOH HOH . P 11 HOH A 27 827 16 HOH HOH . Q 11 HOH L 1 401 31 HOH HOH . Q 11 HOH L 2 402 92 HOH HOH . Q 11 HOH L 3 403 49 HOH HOH . Q 11 HOH L 4 404 62 HOH HOH . Q 11 HOH L 5 405 72 HOH HOH . Q 11 HOH L 6 406 51 HOH HOH . Q 11 HOH L 7 407 91 HOH HOH . Q 11 HOH L 8 408 73 HOH HOH . Q 11 HOH L 9 409 26 HOH HOH . Q 11 HOH L 10 410 24 HOH HOH . Q 11 HOH L 11 411 74 HOH HOH . Q 11 HOH L 12 412 52 HOH HOH . Q 11 HOH L 13 413 50 HOH HOH . Q 11 HOH L 14 414 60 HOH HOH . Q 11 HOH L 15 415 67 HOH HOH . Q 11 HOH L 16 416 27 HOH HOH . Q 11 HOH L 17 417 29 HOH HOH . Q 11 HOH L 18 418 61 HOH HOH . Q 11 HOH L 19 419 84 HOH HOH . Q 11 HOH L 20 420 82 HOH HOH . Q 11 HOH L 21 421 69 HOH HOH . Q 11 HOH L 22 422 30 HOH HOH . Q 11 HOH L 23 423 48 HOH HOH . Q 11 HOH L 24 424 58 HOH HOH . Q 11 HOH L 25 425 25 HOH HOH . Q 11 HOH L 26 426 55 HOH HOH . Q 11 HOH L 27 427 81 HOH HOH . Q 11 HOH L 28 428 53 HOH HOH . Q 11 HOH L 29 429 47 HOH HOH . Q 11 HOH L 30 430 80 HOH HOH . Q 11 HOH L 31 431 59 HOH HOH . Q 11 HOH L 32 432 28 HOH HOH . Q 11 HOH L 33 433 46 HOH HOH . Q 11 HOH L 34 434 56 HOH HOH . Q 11 HOH L 35 435 71 HOH HOH . Q 11 HOH L 36 436 83 HOH HOH . Q 11 HOH L 37 437 63 HOH HOH . Q 11 HOH L 38 438 57 HOH HOH . R 11 HOH H 1 301 93 HOH HOH . R 11 HOH H 2 302 89 HOH HOH . R 11 HOH H 3 303 76 HOH HOH . R 11 HOH H 4 304 32 HOH HOH . R 11 HOH H 5 305 66 HOH HOH . R 11 HOH H 6 306 40 HOH HOH . R 11 HOH H 7 307 35 HOH HOH . R 11 HOH H 8 308 42 HOH HOH . R 11 HOH H 9 309 98 HOH HOH . R 11 HOH H 10 310 36 HOH HOH . R 11 HOH H 11 311 65 HOH HOH . R 11 HOH H 12 312 38 HOH HOH . R 11 HOH H 13 313 39 HOH HOH . R 11 HOH H 14 314 45 HOH HOH . R 11 HOH H 15 315 44 HOH HOH . R 11 HOH H 16 316 64 HOH HOH . R 11 HOH H 17 317 41 HOH HOH . R 11 HOH H 18 318 77 HOH HOH . R 11 HOH H 19 319 95 HOH HOH . R 11 HOH H 20 320 43 HOH HOH . R 11 HOH H 21 321 78 HOH HOH . R 11 HOH H 22 322 54 HOH HOH . R 11 HOH H 23 323 85 HOH HOH . R 11 HOH H 24 324 96 HOH HOH . R 11 HOH H 25 325 75 HOH HOH . R 11 HOH H 26 326 86 HOH HOH . R 11 HOH H 27 327 37 HOH HOH . R 11 HOH H 28 328 94 HOH HOH . R 11 HOH H 29 329 97 HOH HOH . R 11 HOH H 30 330 34 HOH HOH . R 11 HOH H 31 331 68 HOH HOH . R 11 HOH H 32 332 33 HOH HOH . R 11 HOH H 33 333 70 HOH HOH . R 11 HOH H 34 334 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMU . . . D 4 -0.779 1.488 1.509 1 82.03 ? C1 DMU 701 A 1 HETATM 2 C C2 DMU . . . D 4 0.592 1.256 2.013 1 82.67 ? C2 DMU 701 A 1 HETATM 3 C C3 DMU . . . D 4 1.542 0.991 0.89 1 80.84 ? C3 DMU 701 A 1 HETATM 4 C C4 DMU . . . D 4 1.495 2.052 -0.221 1 84.55 ? C4 DMU 701 A 1 HETATM 5 O O5 DMU . . . D 4 0.122 2.382 -0.636 1 78.56 ? O5 DMU 701 A 1 HETATM 6 C C6 DMU . . . D 4 -0.763 2.659 0.535 1 78.16 ? C6 DMU 701 A 1 HETATM 7 O O7 DMU . . . D 4 2.872 0.993 1.454 1 82.29 ? O7 DMU 701 A 1 HETATM 8 O O16 DMU . . . D 4 -2.03 2.895 0.042 1 81.43 ? O16 DMU 701 A 1 HETATM 9 C C18 DMU . . . D 4 -2.067 4.011 -0.858 1 73.92 ? C18 DMU 701 A 1 HETATM 10 C C19 DMU . . . D 4 -2.817 3.575 -2.172 1 75.46 ? C19 DMU 701 A 1 HETATM 11 C C22 DMU . . . D 4 -2.392 4.437 -3.381 1 74.13 ? C22 DMU 701 A 1 HETATM 12 C C25 DMU . . . D 4 -3.012 5.849 -3.343 1 74.21 ? C25 DMU 701 A 1 HETATM 13 C C28 DMU . . . D 4 -1.993 6.924 -3.769 1 78.9 ? C28 DMU 701 A 1 HETATM 14 C C31 DMU . . . D 4 -2.654 8.269 -4.118 1 86.46 ? C31 DMU 701 A 1 HETATM 15 C C34 DMU . . . D 4 -2.021 9.488 -3.361 1 85.54 ? C34 DMU 701 A 1 HETATM 16 C C37 DMU . . . D 4 -2.675 10.823 -3.78 1 82.85 ? C37 DMU 701 A 1 HETATM 17 C C40 DMU . . . D 4 -1.639 11.943 -4.014 1 88.3 ? C40 DMU 701 A 1 HETATM 18 C C43 DMU . . . D 4 -1.441 12.277 -5.497 1 77.27 ? C43 DMU 701 A 1 HETATM 19 O O49 DMU . . . D 4 -1.693 1.769 2.593 1 78.52 ? O49 DMU 701 A 1 HETATM 20 O O55 DMU . . . D 4 0.64 0.123 2.938 1 83.76 ? O55 DMU 701 A 1 HETATM 21 C C57 DMU . . . D 4 2.322 1.626 -1.417 1 79.87 ? C57 DMU 701 A 1 HETATM 22 O O61 DMU . . . D 4 1.675 0.604 -2.15 1 77.39 ? O61 DMU 701 A 1 HETATM 23 C C5 DMU . . . D 4 4.162 -0.44 2.835 1 86.23 ? C5 DMU 701 A 1 HETATM 24 C C7 DMU . . . D 4 5.287 0.527 2.834 1 75.76 ? C7 DMU 701 A 1 HETATM 25 C C8 DMU . . . D 4 6.112 0.441 1.592 1 81.78 ? C8 DMU 701 A 1 HETATM 26 C C9 DMU . . . D 4 5.298 0.394 0.305 1 84.93 ? C9 DMU 701 A 1 HETATM 27 O O1 DMU . . . D 4 4.184 -0.57 0.363 1 86.77 ? O1 DMU 701 A 1 HETATM 28 C C10 DMU . . . D 4 3.342 -0.313 1.562 1 86.8 ? C10 DMU 701 A 1 HETATM 29 O O2 DMU . . . D 4 6.975 1.593 1.523 1 84.48 ? O2 DMU 701 A 1 HETATM 30 O O3 DMU . . . D 4 3.313 -0.236 3.992 1 86.18 ? O3 DMU 701 A 1 HETATM 31 O O4 DMU . . . D 4 6.157 0.228 3.957 1 73.49 ? O4 DMU 701 A 1 HETATM 32 C C11 DMU . . . D 4 6.232 0.027 -0.833 1 80.54 ? C11 DMU 701 A 1 HETATM 33 O O6 DMU . . . D 4 5.514 0.075 -2.055 1 79.32 ? O6 DMU 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 33 #