data_6M2R # _model_server_result.job_id 5ndPJi9iYBojsANRMPLM7g _model_server_result.datetime_utc '2024-11-21 13:54:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":703}' # _entry.id 6M2R # _exptl.entry_id 6M2R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M2R _cell.length_a 96.8 _cell.length_b 141.27 _cell.length_c 167.711 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A O GLY 18 A GLY 42 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc7 A OD1 ASN 287 A ASN 352 1_555 I NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc8 A O LEU 352 A LEU 417 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc9 A OG SER 356 A SER 421 1_555 J NA NA . A NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc10 I NA NA . A NA 706 1_555 P O HOH . A HOH 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc11 B O THR 22 L THR 22 1_555 O NA NA . L NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc12 B OG SER 101 L SER 101 1_555 N NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc13 B O GLY 102 L GLY 102 1_555 N NA NA . L NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? metalc ? metalc14 B OG1 THR 103 L THR 103 1_555 O NA NA . L NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 6M2R _atom_sites.fract_transf_matrix[1][1] 0.010331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005963 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DMU A 1 701 1 DMU DMU . E 5 Y01 A 1 702 1 Y01 Y01 . F 6 CLR A 1 703 1 CLR CLR . G 7 LNR A 1 704 1 LNR LNR . H 8 CL A 1 705 5 CL CL . I 9 NA A 1 706 1 NA NA . J 9 NA A 1 707 2 NA NA . K 10 D10 A 1 708 1 D10 D10 . L 10 D10 A 1 709 2 D10 D10 . M 10 D10 A 1 710 3 D10 D10 . N 9 NA L 1 301 3 NA NA . O 9 NA L 1 302 4 NA NA . P 11 HOH A 1 801 8 HOH HOH . P 11 HOH A 2 802 22 HOH HOH . P 11 HOH A 3 803 3 HOH HOH . P 11 HOH A 4 804 7 HOH HOH . P 11 HOH A 5 805 13 HOH HOH . P 11 HOH A 6 806 12 HOH HOH . P 11 HOH A 7 807 5 HOH HOH . P 11 HOH A 8 808 1 HOH HOH . P 11 HOH A 9 809 20 HOH HOH . P 11 HOH A 10 810 87 HOH HOH . P 11 HOH A 11 811 15 HOH HOH . P 11 HOH A 12 812 9 HOH HOH . P 11 HOH A 13 813 6 HOH HOH . P 11 HOH A 14 814 90 HOH HOH . P 11 HOH A 15 815 4 HOH HOH . P 11 HOH A 16 816 99 HOH HOH . P 11 HOH A 17 817 2 HOH HOH . P 11 HOH A 18 818 11 HOH HOH . P 11 HOH A 19 819 17 HOH HOH . P 11 HOH A 20 820 88 HOH HOH . P 11 HOH A 21 821 10 HOH HOH . P 11 HOH A 22 822 19 HOH HOH . P 11 HOH A 23 823 23 HOH HOH . P 11 HOH A 24 824 18 HOH HOH . P 11 HOH A 25 825 14 HOH HOH . P 11 HOH A 26 826 21 HOH HOH . P 11 HOH A 27 827 16 HOH HOH . Q 11 HOH L 1 401 31 HOH HOH . Q 11 HOH L 2 402 92 HOH HOH . Q 11 HOH L 3 403 49 HOH HOH . Q 11 HOH L 4 404 62 HOH HOH . Q 11 HOH L 5 405 72 HOH HOH . Q 11 HOH L 6 406 51 HOH HOH . Q 11 HOH L 7 407 91 HOH HOH . Q 11 HOH L 8 408 73 HOH HOH . Q 11 HOH L 9 409 26 HOH HOH . Q 11 HOH L 10 410 24 HOH HOH . Q 11 HOH L 11 411 74 HOH HOH . Q 11 HOH L 12 412 52 HOH HOH . Q 11 HOH L 13 413 50 HOH HOH . Q 11 HOH L 14 414 60 HOH HOH . Q 11 HOH L 15 415 67 HOH HOH . Q 11 HOH L 16 416 27 HOH HOH . Q 11 HOH L 17 417 29 HOH HOH . Q 11 HOH L 18 418 61 HOH HOH . Q 11 HOH L 19 419 84 HOH HOH . Q 11 HOH L 20 420 82 HOH HOH . Q 11 HOH L 21 421 69 HOH HOH . Q 11 HOH L 22 422 30 HOH HOH . Q 11 HOH L 23 423 48 HOH HOH . Q 11 HOH L 24 424 58 HOH HOH . Q 11 HOH L 25 425 25 HOH HOH . Q 11 HOH L 26 426 55 HOH HOH . Q 11 HOH L 27 427 81 HOH HOH . Q 11 HOH L 28 428 53 HOH HOH . Q 11 HOH L 29 429 47 HOH HOH . Q 11 HOH L 30 430 80 HOH HOH . Q 11 HOH L 31 431 59 HOH HOH . Q 11 HOH L 32 432 28 HOH HOH . Q 11 HOH L 33 433 46 HOH HOH . Q 11 HOH L 34 434 56 HOH HOH . Q 11 HOH L 35 435 71 HOH HOH . Q 11 HOH L 36 436 83 HOH HOH . Q 11 HOH L 37 437 63 HOH HOH . Q 11 HOH L 38 438 57 HOH HOH . R 11 HOH H 1 301 93 HOH HOH . R 11 HOH H 2 302 89 HOH HOH . R 11 HOH H 3 303 76 HOH HOH . R 11 HOH H 4 304 32 HOH HOH . R 11 HOH H 5 305 66 HOH HOH . R 11 HOH H 6 306 40 HOH HOH . R 11 HOH H 7 307 35 HOH HOH . R 11 HOH H 8 308 42 HOH HOH . R 11 HOH H 9 309 98 HOH HOH . R 11 HOH H 10 310 36 HOH HOH . R 11 HOH H 11 311 65 HOH HOH . R 11 HOH H 12 312 38 HOH HOH . R 11 HOH H 13 313 39 HOH HOH . R 11 HOH H 14 314 45 HOH HOH . R 11 HOH H 15 315 44 HOH HOH . R 11 HOH H 16 316 64 HOH HOH . R 11 HOH H 17 317 41 HOH HOH . R 11 HOH H 18 318 77 HOH HOH . R 11 HOH H 19 319 95 HOH HOH . R 11 HOH H 20 320 43 HOH HOH . R 11 HOH H 21 321 78 HOH HOH . R 11 HOH H 22 322 54 HOH HOH . R 11 HOH H 23 323 85 HOH HOH . R 11 HOH H 24 324 96 HOH HOH . R 11 HOH H 25 325 75 HOH HOH . R 11 HOH H 26 326 86 HOH HOH . R 11 HOH H 27 327 37 HOH HOH . R 11 HOH H 28 328 94 HOH HOH . R 11 HOH H 29 329 97 HOH HOH . R 11 HOH H 30 330 34 HOH HOH . R 11 HOH H 31 331 68 HOH HOH . R 11 HOH H 32 332 33 HOH HOH . R 11 HOH H 33 333 70 HOH HOH . R 11 HOH H 34 334 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . F 6 6.972 17.406 -34.904 1 77.59 ? C1 CLR 703 A 1 HETATM 2 C C2 CLR . . . F 6 6.031 18.474 -35.483 1 70.65 ? C2 CLR 703 A 1 HETATM 3 C C3 CLR . . . F 6 5.047 17.81 -36.438 1 76.83 ? C3 CLR 703 A 1 HETATM 4 C C4 CLR . . . F 6 4.135 16.944 -35.565 1 77.29 ? C4 CLR 703 A 1 HETATM 5 C C5 CLR . . . F 6 4.982 15.892 -34.857 1 70.69 ? C5 CLR 703 A 1 HETATM 6 C C6 CLR . . . F 6 4.518 14.68 -34.805 1 72.77 ? C6 CLR 703 A 1 HETATM 7 C C7 CLR . . . F 6 5.358 13.494 -34.442 1 71.73 ? C7 CLR 703 A 1 HETATM 8 C C8 CLR . . . F 6 6.424 13.884 -33.416 1 70.03 ? C8 CLR 703 A 1 HETATM 9 C C9 CLR . . . F 6 7.174 15.122 -33.902 1 73.69 ? C9 CLR 703 A 1 HETATM 10 C C10 CLR . . . F 6 6.234 16.295 -34.141 1 73.38 ? C10 CLR 703 A 1 HETATM 11 C C11 CLR . . . F 6 8.261 15.501 -32.906 1 71.04 ? C11 CLR 703 A 1 HETATM 12 C C12 CLR . . . F 6 9.274 14.356 -32.785 1 67.14 ? C12 CLR 703 A 1 HETATM 13 C C13 CLR . . . F 6 8.555 13.08 -32.348 1 68.35 ? C13 CLR 703 A 1 HETATM 14 C C14 CLR . . . F 6 7.427 12.75 -33.358 1 65.48 ? C14 CLR 703 A 1 HETATM 15 C C15 CLR . . . F 6 6.885 11.451 -32.75 1 63.02 ? C15 CLR 703 A 1 HETATM 16 C C16 CLR . . . F 6 8.174 10.705 -32.319 1 66.02 ? C16 CLR 703 A 1 HETATM 17 C C17 CLR . . . F 6 9.305 11.753 -32.416 1 67.32 ? C17 CLR 703 A 1 HETATM 18 C C18 CLR . . . F 6 7.9 13.28 -30.982 1 64.94 ? C18 CLR 703 A 1 HETATM 19 C C19 CLR . . . F 6 5.863 16.824 -32.754 1 66.99 ? C19 CLR 703 A 1 HETATM 20 C C20 CLR . . . F 6 10.276 11.52 -31.264 1 69.34 ? C20 CLR 703 A 1 HETATM 21 C C21 CLR . . . F 6 11.052 12.794 -30.927 1 70 ? C21 CLR 703 A 1 HETATM 22 C C22 CLR . . . F 6 11.252 10.43 -31.717 1 61.27 ? C22 CLR 703 A 1 HETATM 23 C C23 CLR . . . F 6 11.621 9.55 -30.527 1 59.87 ? C23 CLR 703 A 1 HETATM 24 C C24 CLR . . . F 6 12.803 8.664 -30.92 1 59.96 ? C24 CLR 703 A 1 HETATM 25 C C25 CLR . . . F 6 12.82 7.375 -30.092 1 59.58 ? C25 CLR 703 A 1 HETATM 26 C C26 CLR . . . F 6 14.193 6.728 -30.235 1 49.18 ? C26 CLR 703 A 1 HETATM 27 C C27 CLR . . . F 6 12.564 7.675 -28.608 1 59.33 ? C27 CLR 703 A 1 HETATM 28 O O1 CLR . . . F 6 4.289 18.791 -37.164 1 71.26 ? O1 CLR 703 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #