data_6M2W
#
_model_server_result.job_id            q_MQI2hyy01uJSD83EYDsw 
_model_server_result.datetime_utc      '2025-03-05 03:35:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6m2w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":5101}' 
#
_entry.id    6M2W 
#
_exptl.entry_id    6M2W 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              194.191 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CAFFEINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6M2W 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6M2W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 R N N 
? 4 W N N 
? 4 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 3893 A GLU 3893 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
metalc ? metalc2 A OE2 GLU 3967 A GLU 3967 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc3 A OE1 GLN 3970 A GLN 3970 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc4 A SG CYS 4958 A CYS 4958 1_555 P ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc5 A SG CYS 4961 A CYS 4961 1_555 P ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc6 A NE2 HIS 4978 A HIS 4978 1_555 P ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc7 A ND1 HIS 4983 A HIS 4983 1_555 P ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc8 A O THR 5001 A THR 5001 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc9 A O HIS 5003 A HIS 5003 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? 
metalc ? metalc10 D OE1 GLU 3893 D GLU 3893 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
metalc ? metalc11 D OE2 GLU 3967 D GLU 3967 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc12 D OE1 GLN 3970 D GLN 3970 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc13 D SG CYS 4958 D CYS 4958 1_555 U ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc14 D SG CYS 4961 D CYS 4961 1_555 U ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc15 D NE2 HIS 4978 D HIS 4978 1_555 U ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc16 D ND1 HIS 4983 D HIS 4983 1_555 U ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc17 D O THR 5001 D THR 5001 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc18 D O HIS 5003 D HIS 5003 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? 
metalc ? metalc19 G OE1 GLU 3893 G GLU 3893 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
metalc ? metalc20 G OE2 GLU 3967 G GLU 3967 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc21 G OE1 GLN 3970 G GLN 3970 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc22 G SG CYS 4958 G CYS 4958 1_555 Z ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc23 G SG CYS 4961 G CYS 4961 1_555 Z ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc24 G NE2 HIS 4978 G HIS 4978 1_555 Z ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc25 G ND1 HIS 4983 G HIS 4983 1_555 Z ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc26 G O THR 5001 G THR 5001 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc27 G O HIS 5003 G HIS 5003 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? 
metalc ? metalc28 J OE1 GLU 3893 J GLU 3893 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
metalc ? metalc29 J OE2 GLU 3967 J GLU 3967 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc30 J OE1 GLN 3970 J GLN 3970 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc31 J SG CYS 4958 J CYS 4958 1_555 EA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc32 J SG CYS 4961 J CYS 4961 1_555 EA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc33 J NE2 HIS 4978 J HIS 4978 1_555 EA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc34 J ND1 HIS 4983 J HIS 4983 1_555 EA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc35 J O THR 5001 J THR 5001 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc36 J O HIS 5003 J HIS 5003 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? 
#
_chem_comp.formula           'C8 H10 N4 O2' 
_chem_comp.formula_weight    194.191 
_chem_comp.id                CFF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CAFFEINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3,7-DIHYDRO-1,3,7-TRIMETHYL-1H-PURINE-2,6-DIONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 CFF sing 119 n y 
N1 C10 CFF sing 120 n n 
N1 C6 CFF sing 121 n y 
C2 N3 CFF sing 122 n y 
C2 O11 CFF doub 123 n n 
C10 H101 CFF sing 124 n n 
C10 H102 CFF sing 125 n n 
C10 H103 CFF sing 126 n n 
C6 C5 CFF sing 127 n y 
C6 O13 CFF doub 128 n n 
N3 C12 CFF sing 129 n n 
N3 C4 CFF sing 130 n y 
C12 H121 CFF sing 131 n n 
C12 H122 CFF sing 132 n n 
C12 H123 CFF sing 133 n n 
C4 C5 CFF doub 134 n y 
C4 N9 CFF sing 135 n y 
C5 N7 CFF sing 136 n y 
N9 C8 CFF doub 137 n y 
N7 C8 CFF sing 138 n y 
N7 C14 CFF sing 139 n n 
C8 H81 CFF sing 140 n n 
C14 H141 CFF sing 141 n n 
C14 H142 CFF sing 142 n n 
C14 H143 CFF sing 143 n n 
#
_atom_sites.entry_id                     6M2W 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 CFF A 1 5101 5101 CFF CFF . 
N 5 CA A 1 5102 5201 CA CA . 
O 6 ATP A 1 5103 5301 ATP ATP . 
P 7 ZN A 1 5104 5401 ZN ZN . 
Q 8 F0U A 1 5105 5501 F0U DRG . 
R 4 CFF D 1 5101 5101 CFF CFF . 
S 5 CA D 1 5102 5201 CA CA . 
T 6 ATP D 1 5103 5301 ATP ATP . 
U 7 ZN D 1 5104 5401 ZN ZN . 
V 8 F0U D 1 5105 5501 F0U DRG . 
W 4 CFF G 1 5101 5101 CFF CFF . 
X 5 CA G 1 5102 5201 CA CA . 
Y 6 ATP G 1 5103 5301 ATP ATP . 
Z 7 ZN G 1 5104 5401 ZN ZN . 
AA 8 F0U G 1 5105 5501 F0U DRG . 
BA 4 CFF J 1 5101 5101 CFF CFF . 
CA 5 CA J 1 5102 5201 CA CA . 
DA 6 ATP J 1 5103 5301 ATP ATP . 
EA 7 ZN J 1 5104 5401 ZN ZN . 
FA 8 F0U J 1 5105 5501 F0U DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CFF . . . M 4 265.295 202.748 270.645 1 69.43 ? N1 CFF 5101 A 1 
HETATM 2 C C2 CFF . . . M 4 265.798 203.16 269.305 1 69.43 ? C2 CFF 5101 A 1 
HETATM 3 C C10 CFF . . . M 4 265.242 201.343 271.001 1 69.43 ? C10 CFF 5101 A 1 
HETATM 4 C C6 CFF . . . M 4 264.863 203.754 271.59 1 69.43 ? C6 CFF 5101 A 1 
HETATM 5 N N3 CFF . . . M 4 265.843 204.608 268.954 1 69.43 ? N3 CFF 5101 A 1 
HETATM 6 O O11 CFF . . . M 4 266.214 202.197 268.382 1 69.43 ? O11 CFF 5101 A 1 
HETATM 7 C C12 CFF . . . M 4 266.33 205.027 267.653 1 69.43 ? C12 CFF 5101 A 1 
HETATM 8 C C4 CFF . . . M 4 265.4 205.59 269.93 1 69.43 ? C4 CFF 5101 A 1 
HETATM 9 C C5 CFF . . . M 4 264.925 205.197 271.204 1 69.43 ? C5 CFF 5101 A 1 
HETATM 10 N N9 CFF . . . M 4 265.348 207.103 269.825 1 69.43 ? N9 CFF 5101 A 1 
HETATM 11 O O13 CFF . . . M 4 264.402 203.309 272.837 1 69.43 ? O13 CFF 5101 A 1 
HETATM 12 N N7 CFF . . . M 4 264.652 206.351 271.72 1 69.43 ? N7 CFF 5101 A 1 
HETATM 13 C C8 CFF . . . M 4 264.852 207.415 271.041 1 69.43 ? C8 CFF 5101 A 1 
HETATM 14 C C14 CFF . . . M 4 264.116 206.507 273.061 1 69.43 ? C14 CFF 5101 A 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    161 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           14 
#