data_6M2W # _model_server_result.job_id oG7ZZYCsA3aGG2sr-RW_UA _model_server_result.datetime_utc '2024-11-13 06:22:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":5102}' # _entry.id 6M2W # _exptl.entry_id 6M2W _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M2W _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 S N N ? 5 X N N ? 5 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 3893 A GLU 3893 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc2 A OE2 GLU 3967 A GLU 3967 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc3 A OE1 GLN 3970 A GLN 3970 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc4 A SG CYS 4958 A CYS 4958 1_555 P ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc5 A SG CYS 4961 A CYS 4961 1_555 P ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc6 A NE2 HIS 4978 A HIS 4978 1_555 P ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc7 A ND1 HIS 4983 A HIS 4983 1_555 P ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc8 A O THR 5001 A THR 5001 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc9 A O HIS 5003 A HIS 5003 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc10 D OE1 GLU 3893 D GLU 3893 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc11 D OE2 GLU 3967 D GLU 3967 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc12 D OE1 GLN 3970 D GLN 3970 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc13 D SG CYS 4958 D CYS 4958 1_555 U ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc14 D SG CYS 4961 D CYS 4961 1_555 U ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc15 D NE2 HIS 4978 D HIS 4978 1_555 U ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc16 D ND1 HIS 4983 D HIS 4983 1_555 U ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc17 D O THR 5001 D THR 5001 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc18 D O HIS 5003 D HIS 5003 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc19 G OE1 GLU 3893 G GLU 3893 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc20 G OE2 GLU 3967 G GLU 3967 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc21 G OE1 GLN 3970 G GLN 3970 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc22 G SG CYS 4958 G CYS 4958 1_555 Z ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc23 G SG CYS 4961 G CYS 4961 1_555 Z ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc24 G NE2 HIS 4978 G HIS 4978 1_555 Z ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc25 G ND1 HIS 4983 G HIS 4983 1_555 Z ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc26 G O THR 5001 G THR 5001 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc27 G O HIS 5003 G HIS 5003 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc28 J OE1 GLU 3893 J GLU 3893 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc29 J OE2 GLU 3967 J GLU 3967 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc30 J OE1 GLN 3970 J GLN 3970 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc31 J SG CYS 4958 J CYS 4958 1_555 EA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc32 J SG CYS 4961 J CYS 4961 1_555 EA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc33 J NE2 HIS 4978 J HIS 4978 1_555 EA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc34 J ND1 HIS 4983 J HIS 4983 1_555 EA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc35 J O THR 5001 J THR 5001 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc36 J O HIS 5003 J HIS 5003 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6M2W _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 CFF A 1 5101 5101 CFF CFF . N 5 CA A 1 5102 5201 CA CA . O 6 ATP A 1 5103 5301 ATP ATP . P 7 ZN A 1 5104 5401 ZN ZN . Q 8 F0U A 1 5105 5501 F0U DRG . R 4 CFF D 1 5101 5101 CFF CFF . S 5 CA D 1 5102 5201 CA CA . T 6 ATP D 1 5103 5301 ATP ATP . U 7 ZN D 1 5104 5401 ZN ZN . V 8 F0U D 1 5105 5501 F0U DRG . W 4 CFF G 1 5101 5101 CFF CFF . X 5 CA G 1 5102 5201 CA CA . Y 6 ATP G 1 5103 5301 ATP ATP . Z 7 ZN G 1 5104 5401 ZN ZN . AA 8 F0U G 1 5105 5501 F0U DRG . BA 4 CFF J 1 5101 5101 CFF CFF . CA 5 CA J 1 5102 5201 CA CA . DA 6 ATP J 1 5103 5301 ATP ATP . EA 7 ZN J 1 5104 5401 ZN ZN . FA 8 F0U J 1 5105 5501 F0U DRG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id X _atom_site.label_entity_id 5 _atom_site.Cartn_x 221.699 _atom_site.Cartn_y 282.535 _atom_site.Cartn_z 251.618 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 5102 _atom_site.auth_asym_id G _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 496 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #