data_6M2W
#
_model_server_result.job_id            l601VFL0W03VGqyBZbd_5w 
_model_server_result.datetime_utc      '2024-11-13 06:17:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6m2w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":5103}' 
#
_entry.id    6M2W 
#
_exptl.entry_id    6M2W 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6M2W 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6M2W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 O N N 
? 6 T N N 
? 6 Y N N 
? 6 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 3893 A GLU 3893 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
metalc ? metalc2 A OE2 GLU 3967 A GLU 3967 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc3 A OE1 GLN 3970 A GLN 3970 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc4 A SG CYS 4958 A CYS 4958 1_555 P ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc5 A SG CYS 4961 A CYS 4961 1_555 P ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc6 A NE2 HIS 4978 A HIS 4978 1_555 P ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc7 A ND1 HIS 4983 A HIS 4983 1_555 P ZN ZN . A ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc8 A O THR 5001 A THR 5001 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc9 A O HIS 5003 A HIS 5003 1_555 N CA CA . A CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? 
metalc ? metalc10 D OE1 GLU 3893 D GLU 3893 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
metalc ? metalc11 D OE2 GLU 3967 D GLU 3967 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc12 D OE1 GLN 3970 D GLN 3970 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc13 D SG CYS 4958 D CYS 4958 1_555 U ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc14 D SG CYS 4961 D CYS 4961 1_555 U ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc15 D NE2 HIS 4978 D HIS 4978 1_555 U ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc16 D ND1 HIS 4983 D HIS 4983 1_555 U ZN ZN . D ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc17 D O THR 5001 D THR 5001 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc18 D O HIS 5003 D HIS 5003 1_555 S CA CA . D CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? 
metalc ? metalc19 G OE1 GLU 3893 G GLU 3893 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
metalc ? metalc20 G OE2 GLU 3967 G GLU 3967 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc21 G OE1 GLN 3970 G GLN 3970 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc22 G SG CYS 4958 G CYS 4958 1_555 Z ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc23 G SG CYS 4961 G CYS 4961 1_555 Z ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc24 G NE2 HIS 4978 G HIS 4978 1_555 Z ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc25 G ND1 HIS 4983 G HIS 4983 1_555 Z ZN ZN . G ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc26 G O THR 5001 G THR 5001 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc27 G O HIS 5003 G HIS 5003 1_555 X CA CA . G CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? 
metalc ? metalc28 J OE1 GLU 3893 J GLU 3893 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
metalc ? metalc29 J OE2 GLU 3967 J GLU 3967 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc30 J OE1 GLN 3970 J GLN 3970 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc31 J SG CYS 4958 J CYS 4958 1_555 EA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc32 J SG CYS 4961 J CYS 4961 1_555 EA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? 
metalc ? metalc33 J NE2 HIS 4978 J HIS 4978 1_555 EA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc34 J ND1 HIS 4983 J HIS 4983 1_555 EA ZN ZN . J ZN 5104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc35 J O THR 5001 J THR 5001 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc36 J O HIS 5003 J HIS 5003 1_555 CA CA CA . J CA 5102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6M2W 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 4 CFF A 1 5101 5101 CFF CFF . 
N 5 CA A 1 5102 5201 CA CA . 
O 6 ATP A 1 5103 5301 ATP ATP . 
P 7 ZN A 1 5104 5401 ZN ZN . 
Q 8 F0U A 1 5105 5501 F0U DRG . 
R 4 CFF D 1 5101 5101 CFF CFF . 
S 5 CA D 1 5102 5201 CA CA . 
T 6 ATP D 1 5103 5301 ATP ATP . 
U 7 ZN D 1 5104 5401 ZN ZN . 
V 8 F0U D 1 5105 5501 F0U DRG . 
W 4 CFF G 1 5101 5101 CFF CFF . 
X 5 CA G 1 5102 5201 CA CA . 
Y 6 ATP G 1 5103 5301 ATP ATP . 
Z 7 ZN G 1 5104 5401 ZN ZN . 
AA 8 F0U G 1 5105 5501 F0U DRG . 
BA 4 CFF J 1 5101 5101 CFF CFF . 
CA 5 CA J 1 5102 5201 CA CA . 
DA 6 ATP J 1 5103 5301 ATP ATP . 
EA 7 ZN J 1 5104 5401 ZN ZN . 
FA 8 F0U J 1 5105 5501 F0U DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . DA 6 211.825 244.798 279.87 1 119.79 ? PG ATP 5103 J 1 
HETATM 2 O O1G ATP . . . DA 6 211.271 244.58 281.257 1 119.79 ? O1G ATP 5103 J 1 
HETATM 3 O O2G ATP . . . DA 6 212.617 246.076 279.753 1 119.79 ? O2G ATP 5103 J 1 
HETATM 4 O O3G ATP . . . DA 6 210.773 244.664 278.796 1 119.79 ? O3G ATP 5103 J 1 
HETATM 5 P PB ATP . . . DA 6 214.473 243.598 279.462 1 119.79 ? PB ATP 5103 J 1 
HETATM 6 O O1B ATP . . . DA 6 215.067 244.391 280.578 1 119.79 ? O1B ATP 5103 J 1 
HETATM 7 O O2B ATP . . . DA 6 214.809 243.946 278.05 1 119.79 ? O2B ATP 5103 J 1 
HETATM 8 O O3B ATP . . . DA 6 212.88 243.601 279.624 1 119.79 ? O3B ATP 5103 J 1 
HETATM 9 P PA ATP . . . DA 6 214.946 240.824 278.674 1 119.79 ? PA ATP 5103 J 1 
HETATM 10 O O1A ATP . . . DA 6 215.607 239.688 279.38 1 119.79 ? O1A ATP 5103 J 1 
HETATM 11 O O2A ATP . . . DA 6 213.619 240.587 278.035 1 119.79 ? O2A ATP 5103 J 1 
HETATM 12 O O3A ATP . . . DA 6 214.808 242.051 279.695 1 119.79 ? O3A ATP 5103 J 1 
HETATM 13 O O5' ATP . . . DA 6 215.958 241.431 277.588 1 119.79 ? O5' ATP 5103 J 1 
HETATM 14 C C5' ATP . . . DA 6 216.851 240.52 276.903 1 119.79 ? C5' ATP 5103 J 1 
HETATM 15 C C4' ATP . . . DA 6 217.945 241.306 276.225 1 119.79 ? C4' ATP 5103 J 1 
HETATM 16 O O4' ATP . . . DA 6 218.928 240.386 275.686 1 119.79 ? O4' ATP 5103 J 1 
HETATM 17 C C3' ATP . . . DA 6 217.512 242.175 275.039 1 119.79 ? C3' ATP 5103 J 1 
HETATM 18 O O3' ATP . . . DA 6 217.196 243.494 275.465 1 119.79 ? O3' ATP 5103 J 1 
HETATM 19 C C2' ATP . . . DA 6 218.759 242.154 274.155 1 119.79 ? C2' ATP 5103 J 1 
HETATM 20 O O2' ATP . . . DA 6 219.735 243.077 274.583 1 119.79 ? O2' ATP 5103 J 1 
HETATM 21 C C1' ATP . . . DA 6 219.226 240.716 274.349 1 119.79 ? C1' ATP 5103 J 1 
HETATM 22 N N9 ATP . . . DA 6 218.537 239.771 273.485 1 119.79 ? N9 ATP 5103 J 1 
HETATM 23 C C8 ATP . . . DA 6 217.211 239.423 273.512 1 119.79 ? C8 ATP 5103 J 1 
HETATM 24 N N7 ATP . . . DA 6 216.9 238.544 272.588 1 119.79 ? N7 ATP 5103 J 1 
HETATM 25 C C5 ATP . . . DA 6 218.093 238.305 271.919 1 119.79 ? C5 ATP 5103 J 1 
HETATM 26 C C6 ATP . . . DA 6 218.425 237.471 270.837 1 119.79 ? C6 ATP 5103 J 1 
HETATM 27 N N6 ATP . . . DA 6 217.552 236.69 270.208 1 119.79 ? N6 ATP 5103 J 1 
HETATM 28 N N1 ATP . . . DA 6 219.714 237.477 270.421 1 119.79 ? N1 ATP 5103 J 1 
HETATM 29 C C2 ATP . . . DA 6 220.589 238.266 271.057 1 119.79 ? C2 ATP 5103 J 1 
HETATM 30 N N3 ATP . . . DA 6 220.39 239.089 272.082 1 119.79 ? N3 ATP 5103 J 1 
HETATM 31 C C4 ATP . . . DA 6 219.106 239.059 272.467 1 119.79 ? C4 ATP 5103 J 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    439 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           31 
#