data_6M32 # _model_server_result.job_id v6qxD74UCFZjSXuXmU6QNg _model_server_result.datetime_utc '2025-09-04 06:09:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YA","auth_seq_id":820}' # _entry.id 6M32 # _exptl.entry_id 6M32 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M32 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M32 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 YA N N ? 12 VB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 111 E HIS 111 1_555 H MG BCL . E BCL 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc2 A O TYR 124 E TYR 124 1_555 N MG BCL . E BCL 378 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.904 ? metalc ? metalc3 A NE2 HIS 146 E HIS 146 1_555 L MG BCL . E BCL 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc4 A O LEU 242 E LEU 242 1_555 K MG BCL . E BCL 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc5 A NE2 HIS 290 E HIS 290 1_555 J MG BCL . E BCL 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc6 A ND1 HIS 297 E HIS 297 1_555 M MG BCL . E BCL 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc7 A NE2 HIS 298 E HIS 298 1_555 I MG BCL . E BCL 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc8 B NE2 HIS 111 F HIS 111 1_555 Q MG BCL . F BCL 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc9 B O TYR 124 F TYR 124 1_555 W MG BCL . F BCL 378 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.904 ? metalc ? metalc10 B NE2 HIS 146 F HIS 146 1_555 U MG BCL . F BCL 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc11 B O LEU 242 F LEU 242 1_555 T MG BCL . F BCL 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc12 B NE2 HIS 290 F HIS 290 1_555 S MG BCL . F BCL 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc13 B ND1 HIS 297 F HIS 297 1_555 V MG BCL . F BCL 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc14 B NE2 HIS 298 F HIS 298 1_555 R MG BCL . F BCL 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc15 C NE2 HIS 111 G HIS 111 1_555 Z MG BCL . G BCL 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc16 C O TYR 124 G TYR 124 1_555 X MG BCL . G BCL 378 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.904 ? metalc ? metalc17 C NE2 HIS 146 G HIS 146 1_555 DA MG BCL . G BCL 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc18 C O LEU 242 G LEU 242 1_555 CA MG BCL . G BCL 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc19 C NE2 HIS 290 G HIS 290 1_555 BA MG BCL . G BCL 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc20 C ND1 HIS 297 G HIS 297 1_555 EA MG BCL . G BCL 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc21 C NE2 HIS 298 G HIS 298 1_555 AA MG BCL . G BCL 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc22 E SG CYS 140 B CYS 140 1_555 FA FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc23 E SG CYS 143 B CYS 143 1_555 FA FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc24 E SG CYS 146 B CYS 146 1_555 FA FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc25 E SG CYS 150 B CYS 150 1_555 GA FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc26 E SG CYS 179 B CYS 179 1_555 GA FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc27 E N CYS 182 B CYS 182 1_555 GA FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc28 E SG CYS 182 B CYS 182 1_555 GA FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc29 E SG CYS 185 B CYS 185 1_555 GA FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc30 E SG CYS 191 B CYS 191 1_555 FA FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc31 F NE2 HIS 79 A HIS 79 1_555 IA MG BCL . A BCL 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc32 F NE2 HIS 150 A HIS 150 1_555 KA MG BCL . A BCL 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc33 F NE2 HIS 209 A HIS 209 1_555 MA MG BCL . A BCL 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc34 F OE2 GLU 242 A GLU 242 1_555 NA MG BCL . A BCL 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc35 F NE2 HIS 282 A HIS 282 1_555 OA MG BCL . A BCL 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc36 F OD1 ASN 375 A ASN 375 1_555 PA MG BCL . A BCL 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc37 F NE2 HIS 376 A HIS 376 1_555 QA MG BCL . A BCL 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc38 F NE2 HIS 487 A HIS 487 1_555 SA MG BCL . A BCL 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc39 F SG CYS 527 A CYS 527 1_555 ZA FE3 SF4 . A SF4 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc40 F SG CYS 536 A CYS 536 1_555 ZA FE2 SF4 . A SF4 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc41 F OD2 ASP 563 A ASP 563 1_555 YA CA CA . A CA 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc42 F OE2 GLU 603 A GLU 603 1_555 YA CA CA . A CA 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc43 F NE2 HIS 621 A HIS 621 1_555 HA MG GS0 . A GS0 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc44 F O PHE 692 A PHE 692 1_555 YA CA CA . A CA 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc45 F OD1 ASN 695 A ASN 695 1_555 YA CA CA . A CA 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc46 F O GLY 696 A GLY 696 1_555 YA CA CA . A CA 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc47 ZA FE4 SF4 . A SF4 821 1_555 G SG CYS 527 a CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc48 ZA FE1 SF4 . A SF4 821 1_555 G SG CYS 536 a CYS 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc49 G NE2 HIS 79 a HIS 79 1_555 FB MG BCL . a BCL 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc50 G NE2 HIS 150 a HIS 150 1_555 HB MG BCL . a BCL 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc51 G NE2 HIS 209 a HIS 209 1_555 JB MG BCL . a BCL 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc52 G OE2 GLU 242 a GLU 242 1_555 KB MG BCL . a BCL 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc53 G NE2 HIS 282 a HIS 282 1_555 LB MG BCL . a BCL 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc54 G OD1 ASN 375 a ASN 375 1_555 MB MG BCL . a BCL 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc55 G NE2 HIS 376 a HIS 376 1_555 NB MG BCL . a BCL 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc56 G NE2 HIS 487 a HIS 487 1_555 PB MG BCL . a BCL 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc57 G OD2 ASP 563 a ASP 563 1_555 VB CA CA . a CA 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc58 G OE2 GLU 603 a GLU 603 1_555 VB CA CA . a CA 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc59 G NE2 HIS 621 a HIS 621 1_555 EB MG GS0 . a GS0 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc60 G O PHE 692 a PHE 692 1_555 VB CA CA . a CA 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc61 G OD1 ASN 695 a ASN 695 1_555 VB CA CA . a CA 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc62 G O GLY 696 a GLY 696 1_555 VB CA CA . a CA 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6M32 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 BCL E 1 371 371 BCL BCL . I 5 BCL E 1 373 373 BCL BCL . J 5 BCL E 1 374 374 BCL BCL . K 5 BCL E 1 375 375 BCL BCL . L 5 BCL E 1 376 376 BCL BCL . M 5 BCL E 1 377 377 BCL BCL . N 5 BCL E 1 378 378 BCL BCL . O 5 BCL E 1 372 372 BCL BCL . P 5 BCL F 1 372 372 BCL BCL . Q 5 BCL F 1 371 371 BCL BCL . R 5 BCL F 1 373 373 BCL BCL . S 5 BCL F 1 374 374 BCL BCL . T 5 BCL F 1 375 375 BCL BCL . U 5 BCL F 1 376 376 BCL BCL . V 5 BCL F 1 377 377 BCL BCL . W 5 BCL F 1 378 378 BCL BCL . X 5 BCL G 1 378 378 BCL BCL . Y 5 BCL G 1 372 372 BCL BCL . Z 5 BCL G 1 371 371 BCL BCL . AA 5 BCL G 1 373 373 BCL BCL . BA 5 BCL G 1 374 374 BCL BCL . CA 5 BCL G 1 375 375 BCL BCL . DA 5 BCL G 1 376 376 BCL BCL . EA 5 BCL G 1 377 377 BCL BCL . FA 6 SF4 B 1 301 301 SF4 SF4 . GA 6 SF4 B 1 302 302 SF4 SF4 . HA 7 GS0 A 1 801 801 GS0 GS0 . IA 5 BCL A 1 804 804 BCL BCL . JA 5 BCL A 1 805 805 BCL BCL . KA 5 BCL A 1 806 806 BCL BCL . LA 5 BCL A 1 807 807 BCL BCL . MA 5 BCL A 1 808 808 BCL BCL . NA 5 BCL A 1 809 809 BCL BCL . OA 5 BCL A 1 810 810 BCL BCL . PA 5 BCL A 1 811 811 BCL BCL . QA 5 BCL A 1 812 812 BCL BCL . RA 5 BCL A 1 813 813 BCL BCL . SA 5 BCL A 1 814 814 BCL BCL . TA 5 BCL A 1 815 815 BCL BCL . UA 8 F26 A 1 816 816 F26 F26 . VA 9 F39 A 1 817 817 F39 F39 . WA 10 LHG A 1 818 818 LHG LHG . XA 11 LMG A 1 819 819 LMG LMG . YA 12 CA A 1 820 820 CA CA . ZA 6 SF4 A 1 821 821 SF4 SF4 . AB 13 G2O A 1 802 802 G2O G2O . BB 13 G2O A 1 803 803 G2O G2O . CB 13 G2O a 1 802 802 G2O G2O . DB 13 G2O a 1 803 803 G2O G2O . EB 7 GS0 a 1 801 801 GS0 GS0 . FB 5 BCL a 1 804 804 BCL BCL . GB 5 BCL a 1 805 805 BCL BCL . HB 5 BCL a 1 806 806 BCL BCL . IB 5 BCL a 1 807 807 BCL BCL . JB 5 BCL a 1 808 808 BCL BCL . KB 5 BCL a 1 809 809 BCL BCL . LB 5 BCL a 1 810 810 BCL BCL . MB 5 BCL a 1 811 811 BCL BCL . NB 5 BCL a 1 812 812 BCL BCL . OB 5 BCL a 1 813 813 BCL BCL . PB 5 BCL a 1 814 814 BCL BCL . QB 5 BCL a 1 815 815 BCL BCL . RB 8 F26 a 1 816 816 F26 F26 . SB 9 F39 a 1 817 817 F39 F39 . TB 10 LHG a 1 818 818 LHG LHG . UB 11 LMG a 1 819 819 LMG LMG . VB 12 CA a 1 820 820 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id YA _atom_site.label_entity_id 12 _atom_site.Cartn_x 206.08 _atom_site.Cartn_y 236.243 _atom_site.Cartn_z 239.416 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 820 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #