data_6M38
#
_model_server_result.job_id            Up2QtmqgiVytUFWpOBhIvg 
_model_server_result.datetime_utc      '2024-11-24 21:35:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6m38 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    6M38 
#
_exptl.entry_id    6M38 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              297.415 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S)-N-methyl-3-(naphthalen-1-yloxy)-3-(thiophen-2-yl)propan-1-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6M38 
_cell.length_a            97.288 
_cell.length_b            140.641 
_cell.length_c            167.818 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6M38 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc1 A O GLY 18 A GLY 42 1_555 H NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc2 A O ALA 20 A ALA 44 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc3 A O VAL 21 A VAL 45 1_555 H NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc5 A O SER 255 A SER 320 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc6 A OG SER 255 A SER 320 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc7 A OD1 ASN 287 A ASN 352 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.18 ? 
metalc ? metalc8 A O LEU 352 A LEU 417 1_555 H NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc9 A OD1 ASP 355 A ASP 420 1_555 H NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc10 A OG SER 356 A SER 421 1_555 H NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
#
_chem_comp.formula           'C18 H19 N O S' 
_chem_comp.formula_weight    297.415 
_chem_comp.id                29E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S)-N-methyl-3-(naphthalen-1-yloxy)-3-(thiophen-2-yl)propan-1-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Duloxetine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C7 C6 29E doub 1 n y 
C7 C8 29E sing 2 n y 
C6 C5 29E sing 3 n y 
S C17 29E sing 4 n y 
S C14 29E sing 5 n y 
C9 C8 29E doub 6 n y 
C9 C10 29E sing 7 n y 
C17 C16 29E doub 8 n y 
C8 C13 29E sing 9 n y 
C5 C4 29E doub 10 n y 
C10 C11 29E doub 11 n y 
C13 C4 29E sing 12 n y 
C13 C12 29E doub 13 n y 
C4 O 29E sing 14 n n 
C16 C15 29E sing 15 n y 
C14 C3 29E sing 16 n n 
C14 C15 29E doub 17 n y 
C11 C12 29E sing 18 n y 
C3 O 29E sing 19 n n 
C3 C2 29E sing 20 n n 
C2 C1 29E sing 21 n n 
C1 N 29E sing 22 n n 
C N 29E sing 23 n n 
C H1 29E sing 24 n n 
C H2 29E sing 25 n n 
C H3 29E sing 26 n n 
N H4 29E sing 27 n n 
C1 H6 29E sing 28 n n 
C1 H7 29E sing 29 n n 
C2 H8 29E sing 30 n n 
C2 H9 29E sing 31 n n 
C3 H10 29E sing 32 n n 
C17 H11 29E sing 33 n n 
C16 H12 29E sing 34 n n 
C15 H13 29E sing 35 n n 
C12 H14 29E sing 36 n n 
C11 H15 29E sing 37 n n 
C10 H16 29E sing 38 n n 
C9 H17 29E sing 39 n n 
C7 H18 29E sing 40 n n 
C6 H19 29E sing 41 n n 
C5 H20 29E sing 42 n n 
#
_atom_sites.entry_id                     6M38 
_atom_sites.fract_transf_matrix[1][1]    0.010279 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00711 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005959 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 29E A 1 601 1 29E 29E . 
E 5 Y01 A 1 602 1 Y01 Y01 . 
F 6 NA A 1 603 101 NA NA . 
G 7 CL A 1 604 102 CL CL . 
H 6 NA A 1 605 103 NA NA . 
I 8 DMU A 1 606 1 DMU DMU . 
J 9 CLR A 1 607 1 CLR CLR . 
K 10 HOH A 1 701 2 HOH HOH . 
K 10 HOH A 2 702 13 HOH HOH . 
K 10 HOH A 3 703 5 HOH HOH . 
K 10 HOH A 4 704 14 HOH HOH . 
K 10 HOH A 5 705 15 HOH HOH . 
K 10 HOH A 6 706 1 HOH HOH . 
K 10 HOH A 7 707 12 HOH HOH . 
K 10 HOH A 8 708 21 HOH HOH . 
K 10 HOH A 9 709 3 HOH HOH . 
K 10 HOH A 10 710 4 HOH HOH . 
K 10 HOH A 11 711 6 HOH HOH . 
L 10 HOH L 1 301 17 HOH HOH . 
L 10 HOH L 2 302 9 HOH HOH . 
L 10 HOH L 3 303 8 HOH HOH . 
L 10 HOH L 4 304 7 HOH HOH . 
L 10 HOH L 5 305 18 HOH HOH . 
L 10 HOH L 6 306 16 HOH HOH . 
M 10 HOH H 1 301 24 HOH HOH . 
M 10 HOH H 2 302 19 HOH HOH . 
M 10 HOH H 3 303 11 HOH HOH . 
M 10 HOH H 4 304 22 HOH HOH . 
M 10 HOH H 5 305 10 HOH HOH . 
M 10 HOH H 6 306 23 HOH HOH . 
M 10 HOH H 7 307 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 29E . . . D 4 199.206 282.991 30.064 1 79.21 ? C 29E 601 A 1 
HETATM 2 N N 29E . . . D 4 200.215 283.814 30.709 1 73.55 ? N 29E 601 A 1 
HETATM 3 C C1 29E . . . D 4 201.215 284.213 29.735 1 74.15 ? C1 29E 601 A 1 
HETATM 4 C C2 29E . . . D 4 201.727 283.027 28.908 1 71.31 ? C2 29E 601 A 1 
HETATM 5 C C3 29E . . . D 4 203.256 283.128 28.813 1 75.1 ? C3 29E 601 A 1 
HETATM 6 C C14 29E . . . D 4 203.897 281.767 28.483 1 81.61 ? C14 29E 601 A 1 
HETATM 7 S S 29E . . . D 4 204.037 281.134 27.066 1 87.52 ? S 29E 601 A 1 
HETATM 8 C C17 29E . . . D 4 204.749 279.763 27.228 1 74.94 ? C17 29E 601 A 1 
HETATM 9 C C16 29E . . . D 4 205.034 279.567 28.634 1 63.64 ? C16 29E 601 A 1 
HETATM 10 C C15 29E . . . D 4 204.493 280.839 29.432 1 72.94 ? C15 29E 601 A 1 
HETATM 11 O O 29E . . . D 4 203.601 284.092 27.846 1 72.53 ? O 29E 601 A 1 
HETATM 12 C C4 29E . . . D 4 204.955 284.44 27.869 1 66.76 ? C4 29E 601 A 1 
HETATM 13 C C13 29E . . . D 4 205.328 284.909 26.591 1 63.61 ? C13 29E 601 A 1 
HETATM 14 C C12 29E . . . D 4 204.389 284.977 25.544 1 63.71 ? C12 29E 601 A 1 
HETATM 15 C C11 29E . . . D 4 204.771 285.442 24.291 1 67.17 ? C11 29E 601 A 1 
HETATM 16 C C10 29E . . . D 4 206.08 285.846 24.054 1 70.79 ? C10 29E 601 A 1 
HETATM 17 C C9 29E . . . D 4 207.008 285.779 25.085 1 71.16 ? C9 29E 601 A 1 
HETATM 18 C C8 29E . . . D 4 206.623 285.307 26.357 1 65.55 ? C8 29E 601 A 1 
HETATM 19 C C7 29E . . . D 4 207.575 285.244 27.387 1 65.75 ? C7 29E 601 A 1 
HETATM 20 C C6 29E . . . D 4 207.2 284.779 28.639 1 70.96 ? C6 29E 601 A 1 
HETATM 21 C C5 29E . . . D 4 205.892 284.371 28.886 1 68.82 ? C5 29E 601 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#