data_6M38 # _model_server_result.job_id JQIlMqeFgBQxh2tWDt6KzA _model_server_result.datetime_utc '2024-10-14 01:27:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 6M38 # _exptl.entry_id 6M38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M38 _cell.length_a 97.288 _cell.length_b 140.641 _cell.length_c 167.818 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A O GLY 18 A GLY 42 1_555 H NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 H NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc4 A OD1 ASN 25 A ASN 49 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc5 A O SER 255 A SER 320 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc6 A OG SER 255 A SER 320 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc7 A OD1 ASN 287 A ASN 352 1_555 F NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.18 ? metalc ? metalc8 A O LEU 352 A LEU 417 1_555 H NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc9 A OD1 ASP 355 A ASP 420 1_555 H NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc10 A OG SER 356 A SER 421 1_555 H NA NA . A NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 571 n n CBA CAB Y01 sing 572 n n CBA CAN Y01 sing 573 n n CAN CAJ Y01 sing 574 n n CAJ CAO Y01 sing 575 n n CAO CBB Y01 sing 576 n n CBB CAC Y01 sing 577 n n CBB CBE Y01 sing 578 n n CBE CAP Y01 sing 579 n n CBE CBI Y01 sing 580 n n CAP CAQ Y01 sing 581 n n CAQ CBG Y01 sing 582 n n CBG CBI Y01 sing 583 n n CBG CBD Y01 sing 584 n n CBI CAE Y01 sing 585 n n CBI CAU Y01 sing 586 n n CAU CAS Y01 sing 587 n n CAS CBF Y01 sing 588 n n CBF CBD Y01 sing 589 n n CBF CBH Y01 sing 590 n n CBD CAK Y01 sing 591 n n CAK CAI Y01 sing 592 n n CAI CAZ Y01 doub 593 n n CAZ CAV Y01 sing 594 n n CAZ CBH Y01 sing 595 n n CAV CBC Y01 sing 596 n n CBH CAD Y01 sing 597 n n CBH CAT Y01 sing 598 n n CAT CAR Y01 sing 599 n n CAR CBC Y01 sing 600 n n CBC OAW Y01 sing 601 n n OAW CAY Y01 sing 602 n n CAY OAG Y01 doub 603 n n CAY CAM Y01 sing 604 n n CAM CAL Y01 sing 605 n n CAL CAX Y01 sing 606 n n CAX OAH Y01 sing 607 n n CAX OAF Y01 doub 608 n n CAA HAA1 Y01 sing 609 n n CAA HAA2 Y01 sing 610 n n CAA HAA3 Y01 sing 611 n n CBA HBA Y01 sing 612 n n CAB HAB1 Y01 sing 613 n n CAB HAB2 Y01 sing 614 n n CAB HAB3 Y01 sing 615 n n CAN HAN1 Y01 sing 616 n n CAN HAN2 Y01 sing 617 n n CAJ HAJ1 Y01 sing 618 n n CAJ HAJ2 Y01 sing 619 n n CAO HAO1 Y01 sing 620 n n CAO HAO2 Y01 sing 621 n n CBB HBB Y01 sing 622 n n CAC HAC1 Y01 sing 623 n n CAC HAC2 Y01 sing 624 n n CAC HAC3 Y01 sing 625 n n CBE HBE Y01 sing 626 n n CAP HAP1 Y01 sing 627 n n CAP HAP2 Y01 sing 628 n n CAQ HAQ1 Y01 sing 629 n n CAQ HAQ2 Y01 sing 630 n n CBG HBG Y01 sing 631 n n CBD HBD Y01 sing 632 n n CAE HAE1 Y01 sing 633 n n CAE HAE2 Y01 sing 634 n n CAE HAE3 Y01 sing 635 n n CAU HAU1 Y01 sing 636 n n CAU HAU2 Y01 sing 637 n n CAS HAS1 Y01 sing 638 n n CAS HAS2 Y01 sing 639 n n CBF HBF Y01 sing 640 n n CAK HAK1 Y01 sing 641 n n CAK HAK2 Y01 sing 642 n n CAI HAI Y01 sing 643 n n CAV HAV1 Y01 sing 644 n n CAV HAV2 Y01 sing 645 n n CBC HBC Y01 sing 646 n n CAD HAD1 Y01 sing 647 n n CAD HAD2 Y01 sing 648 n n CAD HAD3 Y01 sing 649 n n CAT HAT1 Y01 sing 650 n n CAT HAT2 Y01 sing 651 n n CAR HAR1 Y01 sing 652 n n CAR HAR2 Y01 sing 653 n n CAM HAM1 Y01 sing 654 n n CAM HAM2 Y01 sing 655 n n CAL HAL1 Y01 sing 656 n n CAL HAL2 Y01 sing 657 n n OAH HAH Y01 sing 658 n n # _atom_sites.entry_id 6M38 _atom_sites.fract_transf_matrix[1][1] 0.010279 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 29E A 1 601 1 29E 29E . E 5 Y01 A 1 602 1 Y01 Y01 . F 6 NA A 1 603 101 NA NA . G 7 CL A 1 604 102 CL CL . H 6 NA A 1 605 103 NA NA . I 8 DMU A 1 606 1 DMU DMU . J 9 CLR A 1 607 1 CLR CLR . K 10 HOH A 1 701 2 HOH HOH . K 10 HOH A 2 702 13 HOH HOH . K 10 HOH A 3 703 5 HOH HOH . K 10 HOH A 4 704 14 HOH HOH . K 10 HOH A 5 705 15 HOH HOH . K 10 HOH A 6 706 1 HOH HOH . K 10 HOH A 7 707 12 HOH HOH . K 10 HOH A 8 708 21 HOH HOH . K 10 HOH A 9 709 3 HOH HOH . K 10 HOH A 10 710 4 HOH HOH . K 10 HOH A 11 711 6 HOH HOH . L 10 HOH L 1 301 17 HOH HOH . L 10 HOH L 2 302 9 HOH HOH . L 10 HOH L 3 303 8 HOH HOH . L 10 HOH L 4 304 7 HOH HOH . L 10 HOH L 5 305 18 HOH HOH . L 10 HOH L 6 306 16 HOH HOH . M 10 HOH H 1 301 24 HOH HOH . M 10 HOH H 2 302 19 HOH HOH . M 10 HOH H 3 303 11 HOH HOH . M 10 HOH H 4 304 22 HOH HOH . M 10 HOH H 5 305 10 HOH HOH . M 10 HOH H 6 306 23 HOH HOH . M 10 HOH H 7 307 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . E 5 186.512 282.927 40.054 1 85.93 ? CAA Y01 602 A 1 HETATM 2 C CBA Y01 . . . E 5 186.795 281.449 40.354 1 87.77 ? CBA Y01 602 A 1 HETATM 3 C CAB Y01 . . . E 5 186.15 280.582 39.266 1 82.05 ? CAB Y01 602 A 1 HETATM 4 C CAN Y01 . . . E 5 188.331 281.177 40.394 1 83.55 ? CAN Y01 602 A 1 HETATM 5 C CAJ Y01 . . . E 5 188.742 280.653 41.796 1 82.36 ? CAJ Y01 602 A 1 HETATM 6 C CAO Y01 . . . E 5 188.401 281.738 42.864 1 92.23 ? CAO Y01 602 A 1 HETATM 7 C CBB Y01 . . . E 5 189.73 282.513 43.405 1 97.25 ? CBB Y01 602 A 1 HETATM 8 C CAC Y01 . . . E 5 189.816 283.892 42.648 1 85.46 ? CAC Y01 602 A 1 HETATM 9 C CBE Y01 . . . E 5 189.6 282.679 44.766 1 99.47 ? CBE Y01 602 A 1 HETATM 10 C CAP Y01 . . . E 5 189.169 281.253 45.415 1 100.21 ? CAP Y01 602 A 1 HETATM 11 C CAQ Y01 . . . E 5 190.283 280.96 46.801 1 92.08 ? CAQ Y01 602 A 1 HETATM 12 C CBG Y01 . . . E 5 190.796 282.549 47.129 1 103.39 ? CBG Y01 602 A 1 HETATM 13 C CBI Y01 . . . E 5 191.034 283.148 45.603 1 100.3 ? CBI Y01 602 A 1 HETATM 14 C CAE Y01 . . . E 5 192.141 282.285 44.94 1 97.98 ? CAE Y01 602 A 1 HETATM 15 C CAU Y01 . . . E 5 191.455 284.317 45.592 1 101.48 ? CAU Y01 602 A 1 HETATM 16 C CAS Y01 . . . E 5 192.185 284.631 46.45 1 102.77 ? CAS Y01 602 A 1 HETATM 17 C CBF Y01 . . . E 5 191.77 284.098 47.869 1 106.71 ? CBF Y01 602 A 1 HETATM 18 C CBD Y01 . . . E 5 191.502 282.767 47.803 1 108.68 ? CBD Y01 602 A 1 HETATM 19 C CAK Y01 . . . E 5 191.232 282.276 48.94 1 110.56 ? CAK Y01 602 A 1 HETATM 20 C CAI Y01 . . . E 5 192.428 282.554 50.061 1 107.46 ? CAI Y01 602 A 1 HETATM 21 C CAZ Y01 . . . E 5 192.921 283.872 50.086 1 111.27 ? CAZ Y01 602 A 1 HETATM 22 C CAV Y01 . . . E 5 193.952 284.364 51.188 1 108.1 ? CAV Y01 602 A 1 HETATM 23 C CBH Y01 . . . E 5 193.015 284.495 48.975 1 109.18 ? CBH Y01 602 A 1 HETATM 24 C CAD Y01 . . . E 5 194.353 284.12 48.336 1 102.32 ? CAD Y01 602 A 1 HETATM 25 C CAT Y01 . . . E 5 193.002 286.141 49.187 1 104.64 ? CAT Y01 602 A 1 HETATM 26 C CAR Y01 . . . E 5 193.952 286.613 50.268 1 106.5 ? CAR Y01 602 A 1 HETATM 27 C CBC Y01 . . . E 5 193.822 285.915 51.436 1 107.28 ? CBC Y01 602 A 1 HETATM 28 O OAW Y01 . . . E 5 194.883 286.339 52.4 1 112.27 ? OAW Y01 602 A 1 HETATM 29 C CAY Y01 . . . E 5 194.455 286.338 53.756 1 112.39 ? CAY Y01 602 A 1 HETATM 30 O OAG Y01 . . . E 5 193.949 285.37 54.208 1 117.1 ? OAG Y01 602 A 1 HETATM 31 C CAM Y01 . . . E 5 194.637 287.596 54.636 1 109.97 ? CAM Y01 602 A 1 HETATM 32 C CAL Y01 . . . E 5 196.118 288.06 54.625 1 107.98 ? CAL Y01 602 A 1 HETATM 33 C CAX Y01 . . . E 5 196.172 289.599 54.583 1 112.33 ? CAX Y01 602 A 1 HETATM 34 O OAH Y01 . . . E 5 195.098 290.269 54.526 1 111.84 ? OAH Y01 602 A 1 HETATM 35 O OAF Y01 . . . E 5 197.293 290.194 54.601 1 104.99 ? OAF Y01 602 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #