data_6M3B # _model_server_result.job_id HjFfhTLy8bSrWNwDpE3yYA _model_server_result.datetime_utc '2024-11-22 21:48:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 6M3B # _exptl.entry_id 6M3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.49 _cell.angle_gamma 90 _cell.entry_id 6M3B _cell.length_a 112.277 _cell.length_b 94.889 _cell.length_c 114.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 108 A CYS 122 1_555 B SG CYS 141 D CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 A SG CYS 162 A CYS 168 1_555 A SG CYS 176 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 187 A CYS 191 1_555 A SG CYS 215 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 B SG CYS 50 D CYS 50 1_555 B SG CYS 69 D CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 59 D CYS 59 1_555 B SG CYS 64 D CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 B SG CYS 63 D CYS 63 1_555 B SG CYS 78 D CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf8 B SG CYS 80 D CYS 80 1_555 B SG CYS 89 D CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf9 B SG CYS 98 D CYS 98 1_555 B SG CYS 109 D CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf10 B SG CYS 105 D CYS 105 1_555 B SG CYS 118 D CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? disulf ? disulf11 B SG CYS 120 D CYS 120 1_555 B SG CYS 133 D CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf12 C SG CYS 21 B CYS 22 1_555 C SG CYS 89 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf13 C SG CYS 138 B CYS 139 1_555 C SG CYS 197 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 D SG CYS 22 C CYS 22 1_555 D SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf15 D SG CYS 151 C CYS 151 1_555 D SG CYS 207 C CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 79 A ASN 93 1_555 E C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 B ND2 ASN 97 D ASN 97 1_555 F C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6M3B _atom_sites.fract_transf_matrix[1][1] 0.008907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002468 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 301 1 NAG NAG . F 5 NAG D 1 201 2 NAG NAG . G 6 HOH A 1 401 66 HOH HOH . G 6 HOH A 2 402 102 HOH HOH . G 6 HOH A 3 403 93 HOH HOH . G 6 HOH A 4 404 25 HOH HOH . G 6 HOH A 5 405 37 HOH HOH . G 6 HOH A 6 406 126 HOH HOH . G 6 HOH A 7 407 11 HOH HOH . G 6 HOH A 8 408 135 HOH HOH . G 6 HOH A 9 409 3 HOH HOH . G 6 HOH A 10 410 15 HOH HOH . G 6 HOH A 11 411 121 HOH HOH . G 6 HOH A 12 412 122 HOH HOH . G 6 HOH A 13 413 65 HOH HOH . G 6 HOH A 14 414 7 HOH HOH . G 6 HOH A 15 415 61 HOH HOH . G 6 HOH A 16 416 2 HOH HOH . G 6 HOH A 17 417 9 HOH HOH . G 6 HOH A 18 418 33 HOH HOH . G 6 HOH A 19 419 106 HOH HOH . G 6 HOH A 20 420 108 HOH HOH . G 6 HOH A 21 421 79 HOH HOH . G 6 HOH A 22 422 10 HOH HOH . G 6 HOH A 23 423 101 HOH HOH . G 6 HOH A 24 424 29 HOH HOH . G 6 HOH A 25 425 21 HOH HOH . G 6 HOH A 26 426 58 HOH HOH . G 6 HOH A 27 427 72 HOH HOH . G 6 HOH A 28 428 26 HOH HOH . G 6 HOH A 29 429 19 HOH HOH . G 6 HOH A 30 430 117 HOH HOH . G 6 HOH A 31 431 105 HOH HOH . G 6 HOH A 32 432 115 HOH HOH . G 6 HOH A 33 433 47 HOH HOH . G 6 HOH A 34 434 119 HOH HOH . G 6 HOH A 35 435 80 HOH HOH . G 6 HOH A 36 436 107 HOH HOH . G 6 HOH A 37 437 125 HOH HOH . G 6 HOH A 38 438 85 HOH HOH . H 6 HOH D 1 301 16 HOH HOH . H 6 HOH D 2 302 137 HOH HOH . H 6 HOH D 3 303 132 HOH HOH . H 6 HOH D 4 304 71 HOH HOH . H 6 HOH D 5 305 136 HOH HOH . H 6 HOH D 6 306 36 HOH HOH . H 6 HOH D 7 307 74 HOH HOH . H 6 HOH D 8 308 86 HOH HOH . H 6 HOH D 9 309 31 HOH HOH . H 6 HOH D 10 310 131 HOH HOH . H 6 HOH D 11 311 55 HOH HOH . H 6 HOH D 12 312 103 HOH HOH . H 6 HOH D 13 313 134 HOH HOH . H 6 HOH D 14 314 116 HOH HOH . I 6 HOH B 1 301 1 HOH HOH . I 6 HOH B 2 302 40 HOH HOH . I 6 HOH B 3 303 49 HOH HOH . I 6 HOH B 4 304 13 HOH HOH . I 6 HOH B 5 305 18 HOH HOH . I 6 HOH B 6 306 17 HOH HOH . I 6 HOH B 7 307 56 HOH HOH . I 6 HOH B 8 308 34 HOH HOH . I 6 HOH B 9 309 46 HOH HOH . I 6 HOH B 10 310 8 HOH HOH . I 6 HOH B 11 311 38 HOH HOH . I 6 HOH B 12 312 23 HOH HOH . I 6 HOH B 13 313 97 HOH HOH . I 6 HOH B 14 314 54 HOH HOH . I 6 HOH B 15 315 62 HOH HOH . I 6 HOH B 16 316 48 HOH HOH . I 6 HOH B 17 317 118 HOH HOH . I 6 HOH B 18 318 139 HOH HOH . I 6 HOH B 19 319 95 HOH HOH . I 6 HOH B 20 320 129 HOH HOH . I 6 HOH B 21 321 133 HOH HOH . I 6 HOH B 22 322 30 HOH HOH . I 6 HOH B 23 323 84 HOH HOH . I 6 HOH B 24 324 96 HOH HOH . I 6 HOH B 25 325 50 HOH HOH . I 6 HOH B 26 326 120 HOH HOH . I 6 HOH B 27 327 39 HOH HOH . I 6 HOH B 28 328 111 HOH HOH . I 6 HOH B 29 329 67 HOH HOH . I 6 HOH B 30 330 92 HOH HOH . I 6 HOH B 31 331 51 HOH HOH . I 6 HOH B 32 332 88 HOH HOH . I 6 HOH B 33 333 87 HOH HOH . I 6 HOH B 34 334 91 HOH HOH . I 6 HOH B 35 335 114 HOH HOH . I 6 HOH B 36 336 69 HOH HOH . I 6 HOH B 37 337 94 HOH HOH . J 6 HOH C 1 301 6 HOH HOH . J 6 HOH C 2 302 77 HOH HOH . J 6 HOH C 3 303 127 HOH HOH . J 6 HOH C 4 304 81 HOH HOH . J 6 HOH C 5 305 60 HOH HOH . J 6 HOH C 6 306 32 HOH HOH . J 6 HOH C 7 307 20 HOH HOH . J 6 HOH C 8 308 22 HOH HOH . J 6 HOH C 9 309 68 HOH HOH . J 6 HOH C 10 310 14 HOH HOH . J 6 HOH C 11 311 4 HOH HOH . J 6 HOH C 12 312 123 HOH HOH . J 6 HOH C 13 313 5 HOH HOH . J 6 HOH C 14 314 100 HOH HOH . J 6 HOH C 15 315 45 HOH HOH . J 6 HOH C 16 316 64 HOH HOH . J 6 HOH C 17 317 59 HOH HOH . J 6 HOH C 18 318 43 HOH HOH . J 6 HOH C 19 319 73 HOH HOH . J 6 HOH C 20 320 90 HOH HOH . J 6 HOH C 21 321 24 HOH HOH . J 6 HOH C 22 322 44 HOH HOH . J 6 HOH C 23 323 53 HOH HOH . J 6 HOH C 24 324 70 HOH HOH . J 6 HOH C 25 325 12 HOH HOH . J 6 HOH C 26 326 76 HOH HOH . J 6 HOH C 27 327 128 HOH HOH . J 6 HOH C 28 328 41 HOH HOH . J 6 HOH C 29 329 52 HOH HOH . J 6 HOH C 30 330 35 HOH HOH . J 6 HOH C 31 331 104 HOH HOH . J 6 HOH C 32 332 57 HOH HOH . J 6 HOH C 33 333 110 HOH HOH . J 6 HOH C 34 334 112 HOH HOH . J 6 HOH C 35 335 98 HOH HOH . J 6 HOH C 36 336 82 HOH HOH . J 6 HOH C 37 337 42 HOH HOH . J 6 HOH C 38 338 78 HOH HOH . J 6 HOH C 39 339 113 HOH HOH . J 6 HOH C 40 340 109 HOH HOH . J 6 HOH C 41 341 75 HOH HOH . J 6 HOH C 42 342 138 HOH HOH . J 6 HOH C 43 343 28 HOH HOH . J 6 HOH C 44 344 27 HOH HOH . J 6 HOH C 45 345 99 HOH HOH . J 6 HOH C 46 346 130 HOH HOH . J 6 HOH C 47 347 89 HOH HOH . J 6 HOH C 48 348 124 HOH HOH . J 6 HOH C 49 349 63 HOH HOH . J 6 HOH C 50 350 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 20.472 25.269 -26.731 1 85.52 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . E 5 21.962 25.409 -26.369 1 89.73 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . E 5 22.624 26.528 -27.184 1 85.04 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . E 5 22.305 26.403 -28.667 1 94.03 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . E 5 20.802 26.298 -28.863 1 92.55 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . E 5 20.4 26.098 -30.306 1 99.56 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . E 5 22.867 24.919 -24.131 1 82.45 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . E 5 22.9 25.347 -22.691 1 77.24 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . E 5 22.115 25.668 -24.945 1 81.33 ? N2 NAG 301 A 1 HETATM 10 O O3 NAG . . . E 5 24.034 26.459 -27.003 1 91.33 ? O3 NAG 301 A 1 HETATM 11 O O4 NAG . . . E 5 22.801 27.537 -29.371 1 101.18 ? O4 NAG 301 A 1 HETATM 12 O O5 NAG . . . E 5 20.325 25.159 -28.14 1 81.94 ? O5 NAG 301 A 1 HETATM 13 O O6 NAG . . . E 5 20.99 24.929 -30.859 1 96.1 ? O6 NAG 301 A 1 HETATM 14 O O7 NAG . . . E 5 23.496 23.944 -24.536 1 75 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 14 #