data_6M3Z # _model_server_result.job_id -FASLZVKSKq-B16IdyLnaA _model_server_result.datetime_utc '2024-10-14 03:13:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6m3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 6M3Z # _exptl.entry_id 6M3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.348 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S)-2-(aminomethyl)-N,N-diethyl-1-phenyl-cyclopropane-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6M3Z _cell.length_a 96.997 _cell.length_b 141.599 _cell.length_c 168.249 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D GLC 1 B 1 GLC M 1 MAL 4 n D GLC 2 B 2 GLC M 1 MAL 4 n E GLC 1 C 1 GLC M 2 MAL 4 n E GLC 2 C 2 GLC M 2 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 124 A CYS 148 1_555 A SG CYS 133 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 B SG CYS 23 L CYS 23 1_555 B SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf3 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 D O4 GLC . B GLC 1 1_555 D C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing covale ? covale2 E O4 GLC . C GLC 1 1_555 E C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing metalc ? metalc1 A O GLY 18 A GLY 42 1_555 K NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 A O ALA 20 A ALA 44 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc3 A O VAL 21 A VAL 45 1_555 K NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc4 A OD1 ASP 22 A ASP 46 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.001 ? metalc ? metalc5 A OD1 ASN 25 A ASN 49 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc6 A O SER 255 A SER 320 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc7 A OG SER 255 A SER 320 1_555 J NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc8 A O LEU 352 A LEU 417 1_555 K NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc9 A OG SER 356 A SER 421 1_555 K NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? # _chem_comp.formula 'C15 H22 N2 O' _chem_comp.formula_weight 246.348 _chem_comp.id F0F _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S)-2-(aminomethyl)-N,N-diethyl-1-phenyl-cyclopropane-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 F0F sing 191 n n C2 N3 F0F sing 192 n n C17 C18 F0F doub 193 n y C17 C16 F0F sing 194 n y C18 C13 F0F sing 195 n y C16 C15 F0F doub 196 n y C5 C4 F0F sing 197 n n N3 C4 F0F sing 198 n n N3 C6 F0F sing 199 n n C13 C8 F0F sing 200 n n C13 C14 F0F doub 201 n y C9 C8 F0F sing 202 n n C9 C10 F0F sing 203 n n C6 C8 F0F sing 204 n n C6 O7 F0F doub 205 n n C8 C10 F0F sing 206 n n C15 C14 F0F sing 207 n y C10 C11 F0F sing 208 n n N12 C11 F0F sing 209 n n C10 H1 F0F sing 210 n n N12 H2 F0F sing 211 n n N12 H3 F0F sing 212 n n C14 H5 F0F sing 213 n n C15 H6 F0F sing 214 n n C16 H7 F0F sing 215 n n C17 H8 F0F sing 216 n n C18 H9 F0F sing 217 n n C1 H10 F0F sing 218 n n C1 H11 F0F sing 219 n n C1 H12 F0F sing 220 n n C2 H13 F0F sing 221 n n C2 H14 F0F sing 222 n n C4 H15 F0F sing 223 n n C4 H16 F0F sing 224 n n C5 H17 F0F sing 225 n n C5 H18 F0F sing 226 n n C5 H19 F0F sing 227 n n C9 H20 F0F sing 228 n n C9 H21 F0F sing 229 n n C11 H22 F0F sing 230 n n C11 H23 F0F sing 231 n n # _atom_sites.entry_id 6M3Z _atom_sites.fract_transf_matrix[1][1] 0.01031 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 F0F A 1 701 1 F0F MLN . G 6 GOL A 1 702 1 GOL GOL . H 7 D10 A 1 703 1 D10 D10 . I 8 CL A 1 704 1 CL CL . J 9 NA A 1 705 2 NA NA . K 9 NA A 1 706 3 NA NA . L 10 Y01 A 1 707 1 Y01 Y01 . M 11 CLR A 1 710 1 CLR CLR . N 12 HOH A 1 801 16 HOH HOH . N 12 HOH A 2 802 4 HOH HOH . N 12 HOH A 3 803 15 HOH HOH . N 12 HOH A 4 804 17 HOH HOH . N 12 HOH A 5 805 21 HOH HOH . N 12 HOH A 6 806 18 HOH HOH . N 12 HOH A 7 807 5 HOH HOH . N 12 HOH A 8 808 1 HOH HOH . O 12 HOH L 1 301 8 HOH HOH . O 12 HOH L 2 302 14 HOH HOH . O 12 HOH L 3 303 13 HOH HOH . O 12 HOH L 4 304 6 HOH HOH . O 12 HOH L 5 305 2 HOH HOH . O 12 HOH L 6 306 3 HOH HOH . O 12 HOH L 7 307 7 HOH HOH . O 12 HOH L 8 308 9 HOH HOH . P 12 HOH H 1 301 19 HOH HOH . P 12 HOH H 2 302 20 HOH HOH . P 12 HOH H 3 303 11 HOH HOH . P 12 HOH H 4 304 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 F0F . . . F 5 -7.821 -1.53 30.031 1 79.72 ? C10 F0F 701 A 1 HETATM 2 N N12 F0F . . . F 5 -5.922 -2.8 30.752 1 78.33 ? N12 F0F 701 A 1 HETATM 3 C C13 F0F . . . F 5 -9.328 -0.242 28.443 1 76.02 ? C13 F0F 701 A 1 HETATM 4 C C14 F0F . . . F 5 -9.62 0.74 29.405 1 78.75 ? C14 F0F 701 A 1 HETATM 5 C C15 F0F . . . F 5 -10.09 2.005 29.026 1 82.6 ? C15 F0F 701 A 1 HETATM 6 C C16 F0F . . . F 5 -10.29 2.329 27.683 1 80.65 ? C16 F0F 701 A 1 HETATM 7 C C17 F0F . . . F 5 -10.008 1.359 26.721 1 81.26 ? C17 F0F 701 A 1 HETATM 8 C C18 F0F . . . F 5 -9.546 0.087 27.089 1 79.24 ? C18 F0F 701 A 1 HETATM 9 C C1 F0F . . . F 5 -10.065 -3.67 25.316 1 80.12 ? C1 F0F 701 A 1 HETATM 10 C C2 F0F . . . F 5 -9.206 -3.843 26.597 1 78.37 ? C2 F0F 701 A 1 HETATM 11 C C4 F0F . . . F 5 -11.203 -4.561 27.875 1 80.73 ? C4 F0F 701 A 1 HETATM 12 C C5 F0F . . . F 5 -12.537 -3.806 27.757 1 78.88 ? C5 F0F 701 A 1 HETATM 13 C C6 F0F . . . F 5 -9.893 -2.674 28.804 1 79.21 ? C6 F0F 701 A 1 HETATM 14 C C8 F0F . . . F 5 -8.835 -1.62 28.869 1 78.54 ? C8 F0F 701 A 1 HETATM 15 C C9 F0F . . . F 5 -7.38 -2.05 28.664 1 83.27 ? C9 F0F 701 A 1 HETATM 16 C C11 F0F . . . F 5 -7.37 -2.631 31.002 1 80.18 ? C11 F0F 701 A 1 HETATM 17 N N3 F0F . . . F 5 -10.059 -3.667 27.764 1 71.31 ? N3 F0F 701 A 1 HETATM 18 O O7 F0F . . . F 5 -10.737 -2.613 29.739 1 87.3 ? O7 F0F 701 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 18 #